  | KRATOCHVIL, M.* , Wilken, S. E.* , Ebenhöh, O., SCHNEIDER, R., & SATAGOPAM, V. (04 February 2025). COBREXA 2: tidy and scalable construction of complex metabolic models. Bioinformatics, 41 (2). doi:10.1093/bioinformatics/btaf056  Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | ALPER, P., DED, V., HERZINGER, S., GROUES, V., PETER, S., LEBIODA, J., EBERMANN, L., POPLETEEVA, M., BARRY, N. D., WELTER, D., GHOSH, S., BECKER, R., SCHNEIDER, R., GU, W., TREFOIS, C., & SATAGOPAM, V. (15 May 2024). DS-PACK: Tool assembly for the end-to-end support of controlled access human data sharing. Scientific Data, 11 (1), 501. doi:10.1038/s41597-024-03326-9 Peer Reviewed verified by ORBi |
 | TSURKALENKO, O., Bulaev, D., O'Sullivan, M. P., Snoeck, C., GHOSH, S., KOLODKIN, A., ROMMES, B., GAWRON, P., Moreno, C. V., GOMES, C., KAYSEN, A., OHNMACHT, J., Schröder, V. E., PAVELKA, L., Meyers, G. R., PAULY, L., PAULY, C., HANFF, A.-M., MEYRATH, M. M. R., ... CON-VINCE consortium and the ORCHESTRA working group. (09 February 2024). Creation of a pandemic memory by tracing COVID-19 infections and immunity in Luxembourg (CON-VINCE). BMC Infectious Diseases, 24 (1), 179. doi:10.1186/s12879-024-09055-z Peer Reviewed verified by ORBi |
 | SCHRÖDER, V., SKROZIC, A., ERZ, D., KAYSEN, A., FRITZ, J., LOUREIRO, J. M., MCINTYRE, D., PAULY, L., KEMP, J., SCHMITZ, S. K., WAGNER, S., REYES, M., SOARE-LELUBRE, R., SATAGOPAM, V., VEGA MORENO, C. G., GAWRON, P., ROOMP, K., MARTINS CONDE, P., KLUCKEN, J., ... KRÜGER, R. (04 January 2024). Programme Dementia Prevention (pdp): A Nationwide Program for Personalized Prevention in Luxembourg. Journal of Alzheimer's Disease, 97 (2), 791-804. doi:10.3233/JAD-230794 Peer Reviewed verified by ORBi |
 | PAULY, L., RESIDORI, C., BULUT, H., Bulaev, D., GHOSH, S., O'Sullivan, M. P., Fritz, J. V., Vaillant, M., ROMMES, B., SAMUEL, R., SATAGOPAM, V., KRÜGER, R., LEIST, A., CON-VINCE Consortium, & ORCHESTRA Working Group. (2024). Lessons learned from the COVID-19 pandemic: identifying hesitant groups and exploring reasons for vaccination hesitancy, from adolescence to late adulthood. Frontiers in Public Health, 12, 1456265. doi:10.3389/fpubh.2024.1456265 Peer Reviewed verified by ORBi |
 | KLEE, M., AHO, V., MAY, P., Heintz-Buschart, A., LANDOULSI, Z., JONSDOTTIR, S., PAULY, C., PAVELKA, L., DELACOUR, L., KAYSEN, A., Krüger, R., WILMES, P., LEIST, A., Acharya, G., Aguayo, G., Alexandre, M., ALI, M., Ammerlann, W., ARENA, G., ... ZELIMKHANOV, G. (2024). Education as Risk Factor of Mild Cognitive Impairment: The Link to the Gut Microbiome. Journal of Prevention of Alzheimer's Disease. doi:10.14283/jpad.2024.19 Peer Reviewed verified by ORBi |
 | PAVELKA, L., RAWAL, R., GHOSH, S., PAULY, C., PAULY, L., HANFF, A.-M., KOLBER, P. L., JONSDOTTIR, S., MCINTYRE, D., AZAIZ, K., THIRY, E., Vilasboas, L., SOBOLEVA, E., GIRAITIS, M., TSURKALENKO, O., SAPIENZA, S., DIEDERICH, N., KLUCKEN, J., GLAAB, E., ... NCER-PD Consortium. (19 December 2023). Luxembourg Parkinson’s study -comprehensive baseline analysis of Parkinson’s disease and atypical parkinsonism. Frontiers in Neurology, 14. doi:10.3389/fneur.2023.1330321 Peer Reviewed verified by ORBi |
 | ACENCIO, M. L., OSTASZEWSKI, M., MAZEIN, A., Rosenstiel, P., Aden, K., Mishra, N., Andersen, V., Sidiropoulos, P., Banos, A., Filia, A., Rahmouni, S., Finckh, A., GU, W., SCHNEIDER, R., & SATAGOPAM, V. (01 November 2023). The SYSCID map: a graphical and computational resource of molecular mechanisms across rheumatoid arthritis, systemic lupus erythematosus and inflammatory bowel disease. Frontiers in Immunology, 14. doi:10.3389/fimmu.2023.1257321 Peer Reviewed verified by ORBi |
 | Waltemath, D., Inau, E., Michaelis, L., SATAGOPAM, V., & BALAUR, I.-A. (07 September 2023). Experiences From FAIRifying Community Data and FAIR Infrastructure in Biomedical Research Domains. Proceedings of the Conference on Research Data Infrastructure, 1. doi:10.52825/cordi.v1i.415 Peer reviewed |
 | Queralt-Rosinach, N., ALSHAIKHDEEB, B. M. M., BOLZANI, L., SHOAIB, M., Barbero, M. C., Aguiló-Castillo, S., Cirillo, D., Castro, L. J., Tsueng, G., Kalaš, M., Palmblad, M., WELTER, D., GHOSH, S., SATAGOPAM, V., & Sheriff, R. S. M. (2023). Infrastructure for synthetic health data. (1). ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/59023. doi:10.37044/osf.io/q4zgx |
 | WELTER, D., Rocca-Serra, P., GROUES, V., SALLAM, N., Ancien, F., SHABANI, A., Asariardakani, S., ALPER, P., GHOSH, S., Burdett, T., Sansone, S.-A., GU, W., & SATAGOPAM, V. (20 July 2023). The Translational Data Catalog - discoverable biomedical datasets. Scientific Data, 10 (1), 470. doi:10.1038/s41597-023-02258-0 Peer Reviewed verified by ORBi |
 | de Nies, L., Galata, V., Martin-Gallausiaux, C., DESPOTOVIC, M., BUSI, S. B., Snoeck, C. J., DELACOUR, L., Budagavi, D. P., LACZNY, C. C., HABIER, J., Lupu, P.-C., HALDER, R., Fritz, J. V., MARQUES, T., Sandt, E., O'Sullivan, M. P., GHOSH, S., SATAGOPAM, V., Consortium, C.-V., ... WILMES, P. (09 March 2023). Altered infective competence of the human gut microbiome in COVID-19. Microbiome, 11 (1), 46. doi:10.1186/s40168-023-01472-7 Peer Reviewed verified by ORBi |
 | MAZEIN, A., ACENCIO, M. L., BALAUR, I.-A., Rougny, A., WELTER, D., Niarakis, A., Ramirez Ardila, D., Dogrusoz, U., GAWRON, P., SATAGOPAM, V., GU, W., KREMER, A., SCHNEIDER, R., & OSTASZEWSKI, M. (2023). A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers in Bioinformatics, 3, 1197310. doi:10.3389/fbinf.2023.1197310 Peer Reviewed verified by ORBi |
 | Gawron, P., Hoksza, D., Piñero, J., Peña-Chilet, M., Esteban-Medina, M., Fernandez-Rueda, J. L., Colonna, V., Smula, E., HEIRENDT, L., Ancien, F., GROUES, V., SATAGOPAM, V., SCHNEIDER, R., Dopazo, J., Furlong, L. I., & OSTASZEWSKI, M. (2023). Visualization of automatically combined disease maps and pathway diagrams for rare diseases. Frontiers in Bioinformatics, 3, 1101505. doi:10.3389/fbinf.2023.1101505 Peer Reviewed verified by ORBi |
 | VEGA MORENO, C. G., GAWRON, P., Lebioda, J., GROUES, V., KRÜGER, R., SCHNEIDER, R., & SATAGOPAM, V. (20 September 2022). SMASCH: Facilitating multi-appointment scheduling in longitudinal clinical research studies and care programs [Poster presentation]. European Conference on Computational Biology, Sitges, Spain. doi:10.5281/zenodo.6832272 |
 | PAULY, L., KLEE, M., PACCOUD, I., SATAGOPAM, V., GHOSH, S., FRITZ, J., O'Sullivan, M., WILMES, P., KRÜGER, R., & LEIST, A. (April 2022). Individual factors and beliefs determining COVID-19 vaccination willingness [Poster presentation]. ECCMID 2022. |
  | VEGA MORENO, C. G., KRATOCHVIL, M., SATAGOPAM, V., & SCHNEIDER, R. (2022). Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. In Bioinformatics and Biomedical Engineering (pp. 353--358). Cham, Unknown/unspecified: Springer International Publishing. doi:10.1007/978-3-031-07802-6_30 Peer reviewed |
 | GU, W., Rong, P., Hofmann-Apitius, M., & SATAGOPAM, V. (2022). Editorial: Digital Innovation and Data-Driven Research in Neurodegenerative Diseases. Frontiers in Neurology, 13. doi:10.3389/fneur.2022.961847 |
 | Alharbi, E., Gadiya, Y., Henderson, D., Zaliani, A., Delfin-Rossaro, A., Cambon-Thomsen, A., Kohler, M., Witt, G., WELTER, D., Juty, N., Jay, C., Engkvist, O., Goble, C., Reilly, D. S., SATAGOPAM, V., Ioannidis, V., GU, W., & Gribbon, P. (2022). Selection of data sets for FAIRification in drug discovery and development: Which, why, and how? Drug Discovery Today. doi:10.1016/j.drudis.2022.05.010 Peer Reviewed verified by ORBi |
 | VEGA MORENO, C. G., GAWRON, P., LEBIODA, J., GROUES, V., Matyjaszczyk, P., PAULY, C., SMULA, E., KRÜGER, R., SCHNEIDER, R., & SATAGOPAM, V. (2022). Smart Scheduling (SMASCH): multi-appointment scheduling system for longitudinal clinical research studies. JAMIA Open, 5 (2), 038. doi:10.1093/jamiaopen/ooac038 Peer Reviewed verified by ORBi |
 | Broderick, C., Christian, N., Apfelbacher, C., Bosma, A., Dand, N., GHOSH, S., Hangel, N., Hübenthal, M., Middelkamp-Hup, M. A., Min, J., Musters, A. H., Paternoster, L., Rodríguez, E., SATAGOPAM, V., Scordis, P., Spuls, P. I., Szymczak, S., Weidinger, S., Smith, C., ... Bipmap, C. (Other coll.). (2021). The BIOMarkers in Atopic Dermatitis and Psoriasis (BIOMAP) Glossary: developing a lingua franca to facilitate data harmonisation and cross-cohort analyses. British Journal of Dermatology. doi:10.1111/bjd.20587 Peer Reviewed verified by ORBi |
 | SCHOMMER, C., SAUTER, T., PANG, J., SATAGOPAM, V., DESPOTOVIC, V., & GONCALVES, J. (2021). Proceedings of the AI4Health Lecture Series (2021) [Paper presentation]. AI4Health Lectures Series (2021), Campus Belval, University of Luxembourg, Luxembourg. |
 | KRATOCHVIL, M.* , HEIRENDT, L.* , Wilken, S. E., PUSA, T., Arreckx, S., NORONHA, A., van Aalst, M., SATAGOPAM, V., Ebenhöh, O., SCHNEIDER, R., TREFOIS, C., & GU, W. (2021). COBREXA.jl: constraint-based reconstruction and exascale analysis. Bioinformatics. doi:10.1093/bioinformatics/btab782 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | OSTASZEWSKI, M., Niarakis, A., MAZEIN, A., Kuperstein, I., Phair, R., Orta-Resendiz, A., Singh, V., Aghamiri, S. S., ACENCIO, M. L., GLAAB, E., Ruepp, A., Fobo, G., Montrone, C., Brauner, B., Frishman, G., Monraz Gómez, L. C., Somers, J., Hoch, M., Kumar Gupta, S., ... SCHNEIDER, R. (2021). COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology, 17 (10), 10387. doi:10.15252/msb.202110387 Peer Reviewed verified by ORBi |
 | Badimon, L., Robinson, E. L., Jusic, A., Carpusca, I., deWindt, L. J., Emanueli, C., Ferdinandy, P., GU, W., Gyöngyösi, M., Hackl, M., Karaduzovic-Hadziabdic, K., Lustrek, M., Martelli, F., Nham, E., Potočnjak, I., SATAGOPAM, V., SCHNEIDER, R., Thum, T., DEVAUX, Y., & CA17129, O. B. O. E. U.-C. C. A. (2021). Cardiovascular RNA markers and artificial intelligence may improve COVID-19 outcome: a position paper from the EU-CardioRNA COST Action CA17129. Cardiovascular Research. doi:10.1093/cvr/cvab094 Peer Reviewed verified by ORBi |
 | Bernhofer, M., Dallago, C., Karl, T., SATAGOPAM, V., Heinzinger, M., Littmann, M., Olenyi, T., Qiu, J., Schütze, K., Yachdav, G., Ashkenazy, H., Ben-Tal, N., Bromberg, Y., Goldberg, T., Kajan, L., O’Donoghue, S., Sander, C., Schafferhans, A., Schlessinger, A., ... Rost, B. (2021). PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Research. doi:10.1093/nar/gkab354 Peer reviewed |
 | GU, W., Hasan, S., Rocca-Serra, P., & SATAGOPAM, V. (2020). Road to effective data curation for translational research. Drug Discovery Today. doi:10.1016/j.drudis.2020.12.007 Peer Reviewed verified by ORBi |
 | WELTER, D., VEGA MORENO, C. G., BIRYUKOV, M., GROUES, V., GHOSH, S., SCHNEIDER, R., & SATAGOPAM, V. (27 November 2020). Supporting findability of COVID-19 research with large-scale text mining of scientific publications [Poster presentation]. International FAIR Convergence Symposium. doi:10.5281/zenodo.4300199 |
 | KRATOCHVIL, M.* , Hunewald, O.* , HEIRENDT, L., Verissimo, V., Vondrášek, J., SATAGOPAM, V., SCHNEIDER, R., TREFOIS, C., & Ollert, M. (18 November 2020). GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets. GigaScience, 9 (11). doi:10.1093/gigascience/giaa127 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | VEGA MORENO, C. G., GROUES, V., OSTASZEWSKI, M., SATAGOPAM, V., & SCHNEIDER, R. (04 September 2020). BioKC: a platform for quality controlled curation and annotation of systems biology models [Paper presentation]. European Conference on Computational Biology. doi:10.5281/zenodo.4033071 |
 | Rajan, R., Divya, K. P., Kandadai, R. M., Yadav, R., SATAGOPAM, V., Madhusoodanan, U. K., Agarwal, P., Kumar, N., Ferreira, T., Kumar, H., Sreeram Prasad, A. V., Shetty, K., Mehta, S., Desai, S., Kumar, S., Prashanth, L. K., Bhatt, M., Wadia, P., Ramalingam, S., ... Sharma, M. (18 June 2020). Genetic Architecture of Parkinson's Disease in the Indian Population: Harnessing Genetic Diversity to Address Critical Gaps in Parkinson's Disease Research. Frontiers in Neurology, 11, 524. doi:10.3389/fneur.2020.00524 Peer Reviewed verified by ORBi |
 | Snoeck, C. J., Vaillant, M., Abdelrahman, T., SATAGOPAM, V., TURNER, J., Beaumont, K., GOMES, C., FRITZ, J., SCHRÖDER, V., KAYSEN, A., PAVELKA, L., STUTE, L., RAMOS MEYERS, G., Pauly, L., HANSEN, M., PAULY, C., Aguayo, G. A., PERQUIN, M., HANFF, A.-M., ... KRÜGER, R. (2020). Prevalence of SARS-CoV-2 infection in the Luxembourgish population: the CON-VINCE study. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/44961. doi:10.1101/2020.05.11.20092916 |
 | VEGA MORENO, C. G., GROUES, V., OSTASZEWSKI, M., SCHNEIDER, R., & SATAGOPAM, V. (2020). BioKC: a collaborative platform for systems biology model curation and annotation. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/44411. doi:10.1101/2020.10.01.322438 |
 | BECKER, R.* , ALPER, P.* , GROUES, V., MUNOZ, S., JAROSZ, Y., LEBIODA, J., REGE, K., TREFOIS, C., SATAGOPAM, V., & SCHNEIDER, R. (04 December 2019). DAISY: A Data Information System for accountability under the General Data Protection Regulation. GigaScience, 8 (12). doi:10.1093/gigascience/giz140 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | GU, W., Yildirimman, R., Van der Stuyft, E., Verbeeck, D., HERZINGER, S., SATAGOPAM, V., Barbosa-Silva, A., SCHNEIDER, R., Lange, B., Lehrach, H., Guo, Y., Henderson, D., Rowe, A., & on behalf of the IMI OncoTrack and the IMI eTRIKS consortia. (2019). Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. BMC Bioinformatics, 20 (1), 164. doi:10.1186/s12859-019-2748-y Peer Reviewed verified by ORBi |
 | HIPP EPOUSE D'AMICO, G., Vaillant, M., Diederich, N. J., ROOMP, K., SATAGOPAM, V., BANDA, P., Sandt, E., Mommaerts, K., SCHMITZ, S., Longhino, L., Schweicher, A., Hanff, A.-M., Nicolai, B., KOLBER, P. L., REITER, D., PAVELKA, L., BINCK, S., PAULY, C., GEFFERS, L., ... KRÜGER, R. (29 October 2018). The Luxembourg Parkinson’s Study: A Comprehensive Approach for Stratification and Early Diagnosis. Frontiers in Aging Neuroscience, 10, 326. doi:10.3389/fnagi.2018.00326 Peer Reviewed verified by ORBi |
 | HERZINGER, S., GROUES, V., GU, W., SATAGOPAM, V., BANDA, P., TREFOIS, C., & SCHNEIDER, R. (2018). Fractalis: A scalable open-source service for platform-independent interactive visual analysis of biomedical data. GigaScience. doi:10.1093/gigascience/giy109 Peer Reviewed verified by ORBi |
 | Barbosa-Silva, A., Bratfalean, D., GU, W., SATAGOPAM, V., Houston, P., Becnel, L. B., Eifes, S., Richard, F., Tielmann, A., HERZINGER, S., REGE, K., BALLING, R., Peeters, P., & SCHNEIDER, R. (2018). Presenting and Sharing Clinical Data using the eTRIKS Standards Master Tree for tranSMART. Bioinformatics, 809. doi:10.1093/bioinformatics/bty809 Peer Reviewed verified by ORBi |
 | Ellens, K. W., Christian, N., SATAGOPAM, V., MAY, P., & LINSTER, C. (16 November 2017). Confronting the catalytic dark matter encoded by sequenced genomes. Nucleic Acids Research, 45 (20), 11495-11514. doi:10.1093/nar/gkx937 Peer Reviewed verified by ORBi |
 | HERZINGER, S., GU, W., SATAGOPAM, V., Eifes, S., REGE, K., BARBOSA DA SILVA, A., & SCHNEIDER, R. (2017). SmartR: An open-source platform for interactive visual analytics for translational research data. Bioinformatics. doi:10.1093/bioinformatics/btx137 Peer Reviewed verified by ORBi |
 | Gawron, P., OSTASZEWSKI, M., SATAGOPAM, V., GEBEL, S., Mazein, A., Kuzma, M., Zorzan, S., McGee, F., Otjacques, B., BALLING, R., & SCHNEIDER, R. (2016). MINERVA—a platform for visualization and curation of molecular interaction networks. NPJ Systems Biology and Applications. doi:10.1038/npjsba.2016.20 Peer Reviewed verified by ORBi |
 | SATAGOPAM, V., GU, W., Eifes, S., Gawron, P., OSTASZEWSKI, M., GEBEL, S., Barbosa-Silva, A., BALLING, R., & SCHNEIDER, R. (2016). Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data, 4 (2), 97-108. doi:10.1089/big.2015.0057 Peer reviewed |
 | Ramilowski, J., Goldberg, T., Harshbarger, J., Kloppman, E., Lizio, M., SATAGOPAM, V., Itoh, M., Kawaji, H., Carninci, Rost, B., & Forrest, A. (22 July 2015). A draft network of ligand–receptor-mediated multicellular signalling in human. Nature Communications, 6. doi:10.1038/ncomms8866 Peer Reviewed verified by ORBi |
 | Jimenez-Sanchez, M., Lam, W., Hannus, M., Sonnichsen, B., Imarisio, S., Fleming, A., Tarditi, A., Menzies, F., Ed Dami, T., Xu, C., Gonzalez-Couto, E., Lazzeroni, G., Heitz, F., Diamanti, D., Massai, L., SATAGOPAM, V., Marconi, G., Caramelli, C., Nencini, A., ... Rubinsztein, D. C. (2015). siRNA screen identifies QPCT as a druggable target for Huntington's disease. Nature Chemical Biology, 11 (5), 347–354. doi:10.1038/nchembio.1790 Peer Reviewed verified by ORBi |
 | ROUME, H., BUSCHART, A., MULLER, E., MAY, P., SATAGOPAM, V., LACZNY, C. C., NARAYANASAMY, S., LEBRUN, L., Hoopmann, M., Schupp, J., Gillece, J., Hicks, N., Engelthaler, D., SAUTER, T., Keim, P., Moritz, R., & WILMES, P. (2015). Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks. Biofilms and Microbiomes, 1 (15007). doi:10.1038/npjbiofilms.2015.7 Peer Reviewed verified by ORBi |
 | HAAN, S., BAHLAWANE, C., WANG, J., Nazarov, P. V., Muller, A., Eulenfeld, R., HAAN, C., ROLVERING, C., Vallar, L., SATAGOPAM, V., SAUTER, T., & WIESINGER, M. (2015). The oncogenic FIP1L1-PDGFRalpha fusion protein displays skewed signaling properties compared to its wild-type PDGFRalpha counterpart. JAK-STAT, 4 (1), 1062596. doi:10.1080/21623996.2015.1062596 Peer reviewed |
 | BAHLAWANE, C., Eulenfeld, R., WIESINGER, M., WANG, J., Muller, A., GIROD, A., Nazarov, P. V., Felsch, K., Vallar, L., SAUTER, T., SATAGOPAM, V., & HAAN, S. (2015). Constitutive activation of oncogenic PDGFRalpha-mutant proteins occurring in GIST patients induces receptor mislocalisation and alters PDGFRalpha signalling characteristics. Cell Communication and Signaling, 13, 21. doi:10.1186/s12964-015-0096-8 Peer Reviewed verified by ORBi |
 | TREFOIS, C., JAROSZ, Y., GU, W., SATAGOPAM, V., CORONADO, S., & SCHNEIDER, R. (December 2014). Reproducible Research Results R3 [Poster presentation]. 9th Benelux Bioinformatics Conference, Luxembourg, Luxembourg. |
 | Fujita, K. A., OSTASZEWSKI, M., Matsuoka, Y., Ghosh, S., GLAAB, E., TREFOIS, C., CRESPO, I., PERUMAL, T. M., JURKOWSKI, W., ANTONY, P., DIEDERICH, N., BUTTINI, M., Kodama, A., SATAGOPAM, V., EIFES, S., DEL SOL MESA, A., SCHNEIDER, R., Kitano, H., & BALLING, R. (2014). Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map. Molecular Neurobiology. doi:10.1007/s12035-013-8489-4 Peer Reviewed verified by ORBi |
 | Davey, N. E., SATAGOPAM, V., Santiago-Mozos, S., Villacorta-Martin, C., Bharat, T. A. M., SCHNEIDER, R., & Briggs, J. A. G. (2014). The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data. PLoS Computational Biology. doi:10.1371/journal.pcbi.1003951 Peer Reviewed verified by ORBi |
 | OSTASZEWSKI, M., Fujita, K., Matsuoka, Y., Ghosh, S., GLAAB, E., TREFOIS, C., CRESPO, I., PERUMAL, T. M., JURKOWSKI, W., ANTONY, P., DIEDERICH, N., BUTTINI, M., KOLODKIN, A., Kodama, A., SATAGOPAM, V., BIRYUKOV, M., EIFES, S., DEL SOL MESA, A., SCHNEIDER, R., ... BALLING, R. (09 March 2013). The Parkinson's Disease Map: A Framework for Integration, Curation and Exploration of Disease-related Pathways [Poster presentation]. The 11th International Conference on Alzheimer's & Parkinson's Diseases, Florence, Italy. |
 | Chowdhury, A., SATAGOPAM, V., Manukyan, L., Artemenko, K. A., Fung, Y. M. E., SCHNEIDER, R., Bergquist, J., & Bergsten, P. (2013). Signaling in Insulin-Secreting MIN6 Pseudoislets and Monolayer Cells. Journal of Proteome Research. doi:10.1021/pr400864w Peer Reviewed verified by ORBi |
 | Bali, K. K., Selvaraj, D., SATAGOPAM, V., Lu, J., SCHNEIDER, R., & Kuner, R. (2013). Genome-wide identification and functional analyses of microRNA signatures associated with cancer pain. EMBO Molecular Medicine, 5 (11), 1740-58. doi:10.1002/emmm.201302797 Peer Reviewed verified by ORBi |
 | de Ridder, J., Bromberg, Y., Michaut, M., SATAGOPAM, V., Corpas, M., Macintyre, G., & Alexandrov, T. (2013). The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013. PLoS Computational Biology, 9 (11), 1003350. doi:10.1371/journal.pcbi.1003350 Peer Reviewed verified by ORBi |
ROUME, H., SATAGOPAM, V., MULLER, E., MAY, P., HUSSONG, R., & WILMES, P. (2013). Integrated omics highlights keystone genes in community-wide metabolic networks [Poster presentation]. 2013 International Conference on Genomics in Europe. |
ROUME, H., SATAGOPAM, V., MULLER, E., MAY, P., HUSSONG, R., & WILMES, P. (2013). Integrated omics highlights keystone genes in community-wide metabolic networks [Poster presentation]. 5th congress of European Microbiologists (FEMS). |
 | Simonetti, M., Hagenston, A., Vardeh, D., Freitag, E., Mauceri, D., Lu, J., SATAGOPAM, V., SCHNEIDER, R., Costigan, M., Bading, H., & Kuner, R. (2013). Nuclear calcium signaling in spinal neurons drives a genomic program required for persistent inflammatory pain. Neuron, 77 (1), 43-57. doi:10.1016/j.neuron.2012.10.037 Peer Reviewed verified by ORBi |
MULLER, E., ROUME, H., BUSCHART, A., Pinel, N., LACZNY, C. C., SATAGOPAM, V., MAY, P., LEBRUN, L., & WILMES, P. (2013). A model microbial community for Eco-Systems Biology [Poster presentation]. 2nd International Systems Biomedicine Symposium. |
 | Pafilis, E., Pavlopoulos, G., SATAGOPAM, V., Papanikolaou, N., Horn, H., Arvanitidis, C., Jensen, L. J., SCHNEIDER, R., & Iliopoulos, I. (2013). OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction [Poster presentation]. 13th IEEE International Conference on Bioinformatics and Bioengineering (BIBE13), Chania, Greece. doi:10.1109/BIBE.2013.6701679 |
 | Bali, K. K., Venkataramani, V., SATAGOPAM, V., Gupta, P., SCHNEIDER, R., & Kuner, R. (2013). Transcriptional mechanisms underlying sensitization of peripheral sensory neurons by Granulocyte-/Granulocyte-macrophage colony stimulating factors. Molecular Pain, 9 (1), 48. doi:10.1186/1744-8069-9-48 Peer Reviewed verified by ORBi |
TREFOIS, C., Fujita, A. K., OSTASZEWSKI, M., Matsuoka, Y., Ghosh, S., GLAAB, E., Crespo, I., Perumal, T. M., Jurkowski, W., ANTONY, P., DIEDERICH, N., BUTTINI, M., Kodama, A., SATAGOPAM, V., EIFES, S., DEL SOL MESA, A., SCHNEIDER, R., Kitano, H., & BALLING, R. (August 2012). Constructing a comprehensive map of Parkinson’s disease to elucidate underlying mechanisms of its multifaceted molecular pathology [Poster presentation]. The 13th International Conference on Systems Biology. |
 | Marji, J., O'Donoghue, S. I., McClintock, D., SATAGOPAM, V., SCHNEIDER, R., Ratner, D., Worman, H. J., Gordon, L. B., & Djabali, K. (2010). Defective Lamin A-Rb Signaling in Hutchinson-Gilford Progeria Syndrome and Reversal by Farnesyltransferase Inhibition. PLoS ONE, 5 (6). doi:10.1371/journal.pone.0011132 Peer Reviewed verified by ORBi |
 | Neumann, B., Walter, T., Heriche, J.-K., Bulkescher, J., Erfle, H., Conrad, C., Rogers, P., Poser, I., Held, M., Liebel, U., Cetin, C., Sieckmann, F., Pau, G., Kabbe, R., Wuensche, A., SATAGOPAM, V., Schmitz, M. H. A., Chapuis, C., Gerlich, D. W., ... Ellenberg, J. (2010). Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature, 464 (7289), 721-727. doi:10.1038/nature08869 Peer Reviewed verified by ORBi |
 | O'Donoghue, S. I., Horn, H., Pafilis, E., Haag, S., Kuhn, M., SATAGOPAM, V., SCHNEIDER, R., & Jensen, L. J. (2010). Reflect: A practical approach to web semantics. Web Semantics, 8 (2-3), 182-189. doi:10.1016/j.websem.2010.03.003 Peer Reviewed verified by ORBi |
 | SATAGOPAM, V., Theodoropoulou, M. C., Stampolakis, C. K., Pavlopoulos, G. A., Papandreou, N. C., Bagos, P. G., SCHNEIDER, R., & Hamodrakas, S. J. (2010). GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database: The Journal of Biological Databases and Curation, 2010, 019. doi:10.1093/database/baq019 Peer Reviewed verified by ORBi |
 | Soldatos, T. G., O'Donoghue, S. I., SATAGOPAM, V., Jensen, L. J., Brown, N. P., BARBOSA DA SILVA, A., & SCHNEIDER, R. (2010). Martini: using literature keywords to compare gene sets. Nucleic Acids Research, 38 (1), 26-38. doi:10.1093/nar/gkp876 Peer Reviewed verified by ORBi |
 | SATAGOPAM, V., Theodoropoulou, M. C., Christos, S. K., Pavlopoulos, G. A., Papandreou, N. C., Bagos, P. G., SCHNEIDER, R., & Hamodrakas, S. J. (2010). GPCRs, G-proteins, Effectors and their interactions: Human-gpDB, a database employing advanced visualization tools and data integration techniques. Database: The Journal of Biological Databases and Curation. Peer Reviewed verified by ORBi |
 | Pavlopoulos, G. A., O'Donoghue, S. I., SATAGOPAM, V., Soldatos, T. G., Pafilis, E., & SCHNEIDER, R. (2008). Arena3D: visualization of biological networks in 3D. BMC Systems Biology, 2, 1-2. doi:10.1186/1752-0509-2-104 Peer Reviewed verified by ORBi |
 | BARBOSA DA SILVA, A., SATAGOPAM, V., SCHNEIDER, R., & Ortega, J. M. (2008). Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence. BMC Bioinformatics, 9, 141. doi:10.1186/1471-2105-9-141 Peer Reviewed verified by ORBi |
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