Profil

SATAGOPAM Venkata

University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > Bioinformatics Core

Main Referenced Co-authors
SCHNEIDER, Reinhard  (41)
GU, Wei  (16)
OSTASZEWSKI, Marek  (12)
GROUES, Valentin  (11)
TREFOIS, Christophe  (10)
Main Referenced Keywords
COVID-19 (3); Statistics and Probability (3); translational research (3); Biochemistry (2); Bioinformatics (2);
Main Referenced Unit & Research Centers
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group) (33)
ULHPC - University of Luxembourg: High Performance Computing (4)
Luxembourg Centre for Systems Biomedicine (LCSB): Biomedical Data Science (Glaab Group) (3)
Luxembourg Centre for Systems Biomedicine (LCSB): Clinical & Experimental Neuroscience (Krüger Group) (3)
Luxembourg Centre for Systems Biomedicine (LCSB): Eco-Systems Biology (Wilmes Group) (3)
Main Referenced Disciplines
Biochemistry, biophysics & molecular biology (21)
Life sciences: Multidisciplinary, general & others (21)
Human health sciences: Multidisciplinary, general & others (7)
Microbiology (6)
Computer science (5)

Publications (total 65)

The most downloaded
751 downloads
Neumann, B., Walter, T., Heriche, J.-K., Bulkescher, J., Erfle, H., Conrad, C., Rogers, P., Poser, I., Held, M., Liebel, U., Cetin, C., Sieckmann, F., Pau, G., Kabbe, R., Wuensche, A., Satagopam, V., Schmitz, M. H. A., Chapuis, C., Gerlich, D. W., ... Ellenberg, J. (2010). Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature, 464 (7289), 721-727. doi:10.1038/nature08869 https://hdl.handle.net/10993/17511

The most cited

715 citations (OpenCitations)

Neumann, B., Walter, T., Heriche, J.-K., Bulkescher, J., Erfle, H., Conrad, C., Rogers, P., Poser, I., Held, M., Liebel, U., Cetin, C., Sieckmann, F., Pau, G., Kabbe, R., Wuensche, A., Satagopam, V., Schmitz, M. H. A., Chapuis, C., Gerlich, D. W., ... Ellenberg, J. (2010). Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature, 464 (7289), 721-727. doi:10.1038/nature08869 https://hdl.handle.net/10993/17511

SCHRÖDER, V., SKROZIC, A., ERZ, D., KAYSEN, A., Fritz, J. V., LOUREIRO, J. M., MCINTYRE, D., PAULY, L., KEMP, J., SCHMITZ, S. K., WAGNER, S., REYES, M., SOARE-LELUBRE, R., SATAGOPAM, V., Vega, C., GAWRON, P., Roomp, K., Conde, P. M., KLUCKEN, J., ... KRÜGER, R. (04 January 2024). Programme Dementia Prevention (pdp): A Nationwide Program for Personalized Prevention in Luxembourg. Journal of Alzheimer's Disease, 97 (2), 791-804. doi:10.3233/JAD-230794
Peer Reviewed verified by ORBi

KLEE, M., AHO, V., MAY, P., Heintz-Buschart, A., LANDOULSI, Z., JONSDOTTIR, S., PAULY, C., PAVELKA, L., DELACOUR, L., KAYSEN, A., Krüger, R., WILMES, P., LEIST, A., Acharya, G., Aguayo, G., Alexandre, M., ALI, M., Ammerlann, W., ARENA, G., ... ZELIMKHANOV, G. (2024). Education as Risk Factor of Mild Cognitive Impairment: The Link to the Gut Microbiome. Journal of Prevention of Alzheimer's Disease. doi:10.14283/jpad.2024.19
Peer reviewed

PAVELKA, L., RAWAL, R., GHOSH, S., PAULY, C., PAULY, L., HANFF, A.-M., KOLBER, P. L., JONSDOTTIR, S., MCINTYRE, D., AZAIZ, K., THIRY, E., Vilasboas, L., SOBOLEVA, E., GIRAITIS, M., TSURKALENKO, O., SAPIENZA, S., DIEDERICH, N., KLUCKEN, J., GLAAB, E., ... NCER-PD Consortium. (19 December 2023). Luxembourg Parkinson’s study -comprehensive baseline analysis of Parkinson’s disease and atypical parkinsonism. Frontiers in Neurology, 14. doi:10.3389/fneur.2023.1330321
Peer Reviewed verified by ORBi

ACENCIO, M. L., OSTASZEWSKI, M., MAZEIN, A., Rosenstiel, P., Aden, K., Mishra, N., Andersen, V., Sidiropoulos, P., Banos, A., Filia, A., Rahmouni, S., Finckh, A., GU, W., SCHNEIDER, R., & SATAGOPAM, V. (01 November 2023). The SYSCID map: a graphical and computational resource of molecular mechanisms across rheumatoid arthritis, systemic lupus erythematosus and inflammatory bowel disease. Frontiers in Immunology, 14. doi:10.3389/fimmu.2023.1257321
Peer Reviewed verified by ORBi

Waltemath, D., Inau, E., Michaelis, L., SATAGOPAM, V., & BALAUR, I.-A. (07 September 2023). Experiences From FAIRifying Community Data and FAIR Infrastructure in Biomedical Research Domains. Proceedings of the Conference on Research Data Infrastructure, 1. doi:10.52825/cordi.v1i.415
Peer reviewed

Queralt-Rosinach, N., ALSHAIKHDEEB, B. M. M., BOLZANI, L., SHOAIB, M., Barbero, M. C., Aguiló-Castillo, S., Cirillo, D., Castro, L. J., Tsueng, G., Kalaš, M., Palmblad, M., WELTER, D., GHOSH, S., SATAGOPAM, V., & Sheriff, R. S. M. (2023). Infrastructure for synthetic health data. BioHackrXiv Preprints. doi:10.37044/osf.io/q4zgx
Editorial reviewed

WELTER, D., Rocca-Serra, P., GROUES, V., SALLAM, N., Ancien, F., SHABANI, A., Asariardakani, S., ALPER, P., GHOSH, S., Burdett, T., Sansone, S.-A., GU, W., & SATAGOPAM, V. (20 July 2023). The Translational Data Catalog - discoverable biomedical datasets. Scientific Data, 10 (1), 470. doi:10.1038/s41597-023-02258-0
Peer Reviewed verified by ORBi

de Nies, L., Galata, V., Martin-Gallausiaux, C., Despotovic, M., Busi, S. B., Snoeck, C. J., Delacour, L., Budagavi, D. P., Laczny, C. C., Habier, J., Lupu, P.-C., Halder, R., Fritz, J. V., Marques, T., Sandt, E., O'Sullivan, M. P., Ghosh, S., Satagopam, V., Consortium, C.-V., ... Wilmes, P. (09 March 2023). Altered infective competence of the human gut microbiome in COVID-19. Microbiome, 11 (1), 46. doi:10.1186/s40168-023-01472-7
Peer Reviewed verified by ORBi

MAZEIN, A., ACENCIO, M. L., BALAUR, I.-A., Rougny, A., WELTER, D., Niarakis, A., Ramirez Ardila, D., Dogrusoz, U., GAWRON, P., SATAGOPAM, V., GU, W., KREMER, A., SCHNEIDER, R., & OSTASZEWSKI, M. (2023). A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers in Bioinformatics, 3, 1197310. doi:10.3389/fbinf.2023.1197310
Peer reviewed

Gawron, P., Hoksza, D., Piñero, J., Peña-Chilet, M., Esteban-Medina, M., Fernandez-Rueda, J. L., Colonna, V., Smula, E., HEIRENDT, L., Ancien, F., GROUES, V., SATAGOPAM, V., SCHNEIDER, R., Dopazo, J., Furlong, L. I., & OSTASZEWSKI, M. (2023). Visualization of automatically combined disease maps and pathway diagrams for rare diseases. Frontiers in Bioinformatics, 3, 1101505. doi:10.3389/fbinf.2023.1101505
Peer reviewed

Vega Moreno, C. G., Gawron, P., Lebioda, J., Groues, V., Krüger, R., Schneider, R., & Satagopam, V. (20 September 2022). SMASCH: Facilitating multi-appointment scheduling in longitudinal clinical research studies and care programs [Poster presentation]. European Conference on Computational Biology, Sitges, Spain. doi:10.5281/zenodo.6832272

Pauly, L., Klee, M., Paccoud, I., Satagopam, V., Ghosh, S., Fritz, J., O'Sullivan, M., Wilmes, P., Krüger, R., & Leist, A. (April 2022). Individual factors and beliefs determining COVID-19 vaccination willingness [Poster presentation]. ECCMID 2022.

Alharbi, E., Gadiya, Y., Henderson, D., Zaliani, A., Delfin-Rossaro, A., Cambon-Thomsen, A., Kohler, M., Witt, G., Welter, D., Juty, N., Jay, C., Engkvist, O., Goble, C., Reilly, D. S., Satagopam, V., Ioannidis, V., Gu, W., & Gribbon, P. (2022). Selection of data sets for FAIRification in drug discovery and development: Which, why, and how? Drug Discovery Today. doi:10.1016/j.drudis.2022.05.010
Peer Reviewed verified by ORBi

Gu, W., Rong, P., Hofmann-Apitius, M., & Satagopam, V. (2022). Editorial: Digital Innovation and Data-Driven Research in Neurodegenerative Diseases. Frontiers in Neurology, 13. doi:10.3389/fneur.2022.961847

Vega Moreno, C. G., Kratochvil, M., Satagopam, V., & Schneider, R. (2022). Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. In Bioinformatics and Biomedical Engineering (pp. 353--358). Cham, Unknown/unspecified: Springer International Publishing. doi:10.1007/978-3-031-07802-6_30
Peer reviewed

Vega Moreno, C. G., Gawron, P., Lebioda, J., Groues, V., Matyjaszczyk, P., Pauly, C., Smula, E., Krüger, R., Schneider, R., & Satagopam, V. (2022). Smart Scheduling (SMASCH): multi-appointment scheduling system for longitudinal clinical research studies. JAMIA Open, 5 (2), 038. doi:10.1093/jamiaopen/ooac038
Peer Reviewed verified by ORBi

Broderick, C., Christian, N., Apfelbacher, C., Bosma, A., Dand, N., Ghosh, S., Hangel, N., Hübenthal, M., Middelkamp-Hup, M. A., Min, J., Musters, A. H., Paternoster, L., Rodríguez, E., Satagopam, V., Scordis, P., Spuls, P. I., Szymczak, S., Weidinger, S., Smith, C., ... Bipmap, C. (Other coll.). (2021). The BIOMarkers in Atopic Dermatitis and Psoriasis (BIOMAP) Glossary: developing a lingua franca to facilitate data harmonisation and cross-cohort analyses. British Journal of Dermatology. doi:10.1111/bjd.20587
Peer Reviewed verified by ORBi

Schommer, C., Sauter, T., Pang, J., Satagopam, V., Despotovic, V., & Goncalves, J. (2021). Proceedings of the AI4Health Lecture Series (2021) [Paper presentation]. AI4Health Lectures Series (2021), Campus Belval, University of Luxembourg, Luxembourg.

Badimon, L., Robinson, E. L., Jusic, A., Carpusca, I., deWindt, L. J., Emanueli, C., Ferdinandy, P., Gu, W., Gyöngyösi, M., Hackl, M., Karaduzovic-Hadziabdic, K., Lustrek, M., Martelli, F., Nham, E., Potočnjak, I., Satagopam, V., Schneider, R., Thum, T., Devaux, Y., & CA17129, O. B. O. E. U.-C. C. A. (2021). Cardiovascular RNA markers and artificial intelligence may improve COVID-19 outcome: a position paper from the EU-CardioRNA COST Action CA17129. Cardiovascular Research. doi:10.1093/cvr/cvab094
Peer Reviewed verified by ORBi

Kratochvil, M.* , Heirendt, L.* , Wilken, S. E., Pusa, T., Arreckx, S., Noronha, A., van Aalst, M., Satagopam, V., Ebenhöh, O., Schneider, R., Trefois, C., & Gu, W. (2021). COBREXA.jl: constraint-based reconstruction and exascale analysis. Bioinformatics. doi:10.1093/bioinformatics/btab782
Peer reviewed
* These authors have contributed equally to this work.

Bernhofer, M., Dallago, C., Karl, T., Satagopam, V., Heinzinger, M., Littmann, M., Olenyi, T., Qiu, J., Schütze, K., Yachdav, G., Ashkenazy, H., Ben-Tal, N., Bromberg, Y., Goldberg, T., Kajan, L., O’Donoghue, S., Sander, C., Schafferhans, A., Schlessinger, A., ... Rost, B. (2021). PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Research. doi:10.1093/nar/gkab354
Peer reviewed

Ostaszewski, M., Niarakis, A., Mazein, A., Kuperstein, I., Phair, R., Orta-Resendiz, A., Singh, V., Aghamiri, S. S., Acencio, M. L., Glaab, E., Ruepp, A., Fobo, G., Montrone, C., Brauner, B., Frishman, G., Monraz Gómez, L. C., Somers, J., Hoch, M., Kumar Gupta, S., ... Schneider, R. (2021). COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology, 17 (10), 10387. doi:10.15252/msb.202110387
Peer Reviewed verified by ORBi

Gu, W., Hasan, S., Rocca-Serra, P., & Satagopam, V. (2020). Road to effective data curation for translational research. Drug Discovery Today. doi:10.1016/j.drudis.2020.12.007
Peer Reviewed verified by ORBi

Welter, D., Vega Moreno, C. G., Biryukov, M., Groues, V., Ghosh, S., Schneider, R., & Satagopam, V. (27 November 2020). Supporting findability of COVID-19 research with large-scale text mining of scientific publications [Poster presentation]. International FAIR Convergence Symposium. doi:10.5281/zenodo.4300199

Kratochvil, M.* , Hunewald, O.* , Heirendt, L., Verissimo, V., Vondrášek, J., Satagopam, V., Schneider, R., Trefois, C., & Ollert, M. (18 November 2020). GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets. GigaScience, 9 (11). doi:10.1093/gigascience/giaa127
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Vega Moreno, C. G., Groues, V., Ostaszewski, M., Satagopam, V., & Schneider, R. (04 September 2020). BioKC: a platform for quality controlled curation and annotation of systems biology models [Paper presentation]. European Conference on Computational Biology. doi:10.5281/zenodo.4033071

Rajan, R., Divya, K. P., Kandadai, R. M., Yadav, R., Satagopam, V., Madhusoodanan, U. K., Agarwal, P., Kumar, N., Ferreira, T., Kumar, H., Sreeram Prasad, A. V., Shetty, K., Mehta, S., Desai, S., Kumar, S., Prashanth, L. K., Bhatt, M., Wadia, P., Ramalingam, S., ... Sharma, M. (18 June 2020). Genetic Architecture of Parkinson's Disease in the Indian Population: Harnessing Genetic Diversity to Address Critical Gaps in Parkinson's Disease Research. Frontiers in Neurology, 11, 524. doi:10.3389/fneur.2020.00524
Peer Reviewed verified by ORBi

Snoeck, C. J., Vaillant, M., Abdelrahman, T., Satagopam, V., Turner, J., Beaumont, K., Gomes, C., Fritz, J., Schröder, V., Kaysen, A., Pavelka, L., Stute, L., Ramos Meyers, G., Pauly, L., Hansen, M., Pauly, C., Aguayo, G. A., Perquin, M., Hanff, A.-M., ... Krüger, R. (2020). Prevalence of SARS-CoV-2 infection in the Luxembourgish population: the CON-VINCE study. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/44961. doi:10.1101/2020.05.11.20092916

Vega Moreno, C. G., Groues, V., Ostaszewski, M., Schneider, R., & Satagopam, V. (2020). BioKC: a collaborative platform for systems biology model curation and annotation. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/44411. doi:10.1101/2020.10.01.322438

Becker, R.* , Alper, P.* , Groues, V., Munoz, S., Jarosz, Y., Lebioda, J., Rege, K., Trefois, C., Satagopam, V., & Schneider, R. (04 December 2019). DAISY: A Data Information System for accountability under the General Data Protection Regulation. GigaScience, 8 (12). doi:10.1093/gigascience/giz140
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Gu, W., Yildirimman, R., Van der Stuyft, E., Verbeeck, D., Herzinger, S., Satagopam, V., Barbosa-Silva, A., Schneider, R., Lange, B., Lehrach, H., Guo, Y., Henderson, D., Rowe, A., & on behalf of the IMI OncoTrack and the IMI eTRIKS consortia. (2019). Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. BMC Bioinformatics, 20 (1), 164. doi:10.1186/s12859-019-2748-y
Peer Reviewed verified by ORBi

Hipp Epouse D'amico, G., Vaillant, M., Diederich, N. J., Roomp, K., Satagopam, V., Banda, P., Sandt, E., Mommaerts, K., Schmitz, S., Longhino, L., Schweicher, A., Hanff, A.-M., Nicolai, B., Kolber, P. L., Reiter, D., Pavelka, L., Binck, S., Pauly, C., Geffers, L., ... Krüger, R. (29 October 2018). The Luxembourg Parkinson’s Study: A Comprehensive Approach for Stratification and Early Diagnosis. Frontiers in Aging Neuroscience, 10, 326. doi:10.3389/fnagi.2018.00326
Peer Reviewed verified by ORBi

Herzinger, S., Groues, V., Gu, W., Satagopam, V., Banda, P., Trefois, C., & Schneider, R. (2018). Fractalis: A scalable open-source service for platform-independent interactive visual analysis of biomedical data. GigaScience. doi:10.1093/gigascience/giy109
Peer reviewed

Barbosa-Silva, A., Bratfalean, D., Gu, W., Satagopam, V., Houston, P., Becnel, L. B., Eifes, S., Richard, F., Tielmann, A., Herzinger, S., Rege, K., Balling, R., Peeters, P., & Schneider, R. (2018). Presenting and Sharing Clinical Data using the eTRIKS Standards Master Tree for tranSMART. Bioinformatics, 809. doi:10.1093/bioinformatics/bty809
Peer reviewed

Ellens, K. W., Christian, N., Satagopam, V., May, P., & Linster, C. (16 November 2017). Confronting the catalytic dark matter encoded by sequenced genomes. Nucleic Acids Research, 45 (20), 11495-11514. doi:10.1093/nar/gkx937
Peer Reviewed verified by ORBi

Herzinger, S., Gu, W., Satagopam, V., Eifes, S., Rege, K., Barbosa Da Silva, A., & Schneider, R. (2017). SmartR: An open-source platform for interactive visual analytics for translational research data. Bioinformatics. doi:10.1093/bioinformatics/btx137
Peer reviewed

Gawron, P., Ostaszewski, M., Satagopam, V., Gebel, S., Mazein, A., Kuzma, M., Zorzan, S., McGee, F., Otjacques, B., Balling, R., & Schneider, R. (2016). MINERVA—a platform for visualization and curation of molecular interaction networks. NPJ Systems Biology and Applications. doi:10.1038/npjsba.2016.20
Peer Reviewed verified by ORBi

Satagopam, V., Gu, W., Eifes, S., Gawron, P., Ostaszewski, M., Gebel, S., Barbosa-Silva, A., Balling, R., & Schneider, R. (2016). Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data, 4 (2), 97-108. doi:10.1089/big.2015.0057
Peer reviewed

Ramilowski, J., Goldberg, T., Harshbarger, J., Kloppman, E., Lizio, M., Satagopam, V., Itoh, M., Kawaji, H., Carninci, Rost, B., & Forrest, A. (22 July 2015). A draft network of ligand–receptor-mediated multicellular signalling in human. Nature Communications, 6. doi:10.1038/ncomms8866
Peer Reviewed verified by ORBi

Jimenez-Sanchez, M., Lam, W., Hannus, M., Sonnichsen, B., Imarisio, S., Fleming, A., Tarditi, A., Menzies, F., Ed Dami, T., Xu, C., Gonzalez-Couto, E., Lazzeroni, G., Heitz, F., Diamanti, D., Massai, L., Satagopam, V., Marconi, G., Caramelli, C., Nencini, A., ... Rubinsztein, D. C. (2015). siRNA screen identifies QPCT as a druggable target for Huntington's disease. Nature Chemical Biology, 11 (5), 347–354. doi:10.1038/nchembio.1790
Peer Reviewed verified by ORBi

Bahlawane, C., Eulenfeld, R., Wiesinger, M., Wang, J., Muller, A., Girod, A., Nazarov, P. V., Felsch, K., Vallar, L., Sauter, T., Satagopam, V., & Haan, S. (2015). Constitutive activation of oncogenic PDGFRalpha-mutant proteins occurring in GIST patients induces receptor mislocalisation and alters PDGFRalpha signalling characteristics. Cell Communication and Signaling, 13, 21. doi:10.1186/s12964-015-0096-8
Peer Reviewed verified by ORBi

Haan, S., Bahlawane, C., Wang, J., Nazarov, P. V., Muller, A., Eulenfeld, R., Haan, C., Rolvering, C., Vallar, L., Satagopam, V., Sauter, T., & Wiesinger, M. (2015). The oncogenic FIP1L1-PDGFRalpha fusion protein displays skewed signaling properties compared to its wild-type PDGFRalpha counterpart. JAK-STAT, 4 (1), 1062596. doi:10.1080/21623996.2015.1062596
Peer reviewed

Roume, H., Buschart, A., Muller, E., May, P., Satagopam, V., Laczny, C. C., Narayanasamy, S., Lebrun, L., Hoopmann, M., Schupp, J., Gillece, J., Hicks, N., Engelthaler, D., Sauter, T., Keim, P., Moritz, R., & Wilmes, P. (2015). Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks. Biofilms and Microbiomes, 1 (15007). doi:10.1038/npjbiofilms.2015.7
Peer Reviewed verified by ORBi

Trefois, C., Jarosz, Y., Gu, W., Satagopam, V., Coronado, S., & Schneider, R. (December 2014). Reproducible Research Results R3 [Poster presentation]. 9th Benelux Bioinformatics Conference, Luxembourg, Luxembourg.

Fujita, K. A., Ostaszewski, M., Matsuoka, Y., Ghosh, S., Glaab, E., Trefois, C., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kodama, A., Satagopam, V., Eifes, S., del Sol Mesa, A., Schneider, R., Kitano, H., & Balling, R. (2014). Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map. Molecular Neurobiology. doi:10.1007/s12035-013-8489-4
Peer Reviewed verified by ORBi

Davey, N. E., Satagopam, V., Santiago-Mozos, S., Villacorta-Martin, C., Bharat, T. A. M., Schneider, R., & Briggs, J. A. G. (2014). The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data. PLoS Computational Biology. doi:10.1371/journal.pcbi.1003951
Peer Reviewed verified by ORBi

Ostaszewski, M., Fujita, K., Matsuoka, Y., Ghosh, S., Glaab, E., Trefois, C., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kolodkin, A., Kodama, A., Satagopam, V., Biryukov, M., Eifes, S., del Sol Mesa, A., Schneider, R., ... Balling, R. (09 March 2013). The Parkinson's Disease Map: A Framework for Integration, Curation and Exploration of Disease-related Pathways [Poster presentation]. The 11th International Conference on Alzheimer's & Parkinson's Diseases, Florence, Italy.

Roume, H., Satagopam, V., Muller, E., May, P., Hussong, R., & Wilmes, P. (2013). Integrated omics highlights keystone genes in community-wide metabolic networks [Poster presentation]. 5th congress of European Microbiologists (FEMS).

Roume, H., Satagopam, V., Muller, E., May, P., Hussong, R., & Wilmes, P. (2013). Integrated omics highlights keystone genes in community-wide metabolic networks [Poster presentation]. 2013 International Conference on Genomics in Europe.

Simonetti, M., Hagenston, A., Vardeh, D., Freitag, E., Mauceri, D., Lu, J., Satagopam, V., Schneider, R., Costigan, M., Bading, H., & Kuner, R. (2013). Nuclear calcium signaling in spinal neurons drives a genomic program required for persistent inflammatory pain. Neuron, 77 (1), 43-57. doi:10.1016/j.neuron.2012.10.037
Peer Reviewed verified by ORBi

de Ridder, J., Bromberg, Y., Michaut, M., Satagopam, V., Corpas, M., Macintyre, G., & Alexandrov, T. (2013). The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013. PLoS Computational Biology, 9 (11), 1003350. doi:10.1371/journal.pcbi.1003350
Peer Reviewed verified by ORBi

Bali, K. K., Selvaraj, D., Satagopam, V., Lu, J., Schneider, R., & Kuner, R. (2013). Genome-wide identification and functional analyses of microRNA signatures associated with cancer pain. EMBO Molecular Medicine, 5 (11), 1740-58. doi:10.1002/emmm.201302797
Peer Reviewed verified by ORBi

Chowdhury, A., Satagopam, V., Manukyan, L., Artemenko, K. A., Fung, Y. M. E., Schneider, R., Bergquist, J., & Bergsten, P. (2013). Signaling in Insulin-Secreting MIN6 Pseudoislets and Monolayer Cells. Journal of Proteome Research. doi:10.1021/pr400864w
Peer Reviewed verified by ORBi

Pafilis, E., Pavlopoulos, G., Satagopam, V., Papanikolaou, N., Horn, H., Arvanitidis, C., Jensen, L. J., Schneider, R., & Iliopoulos, I. (2013). OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction [Poster presentation]. 13th IEEE International Conference on Bioinformatics and Bioengineering (BIBE13), Chania, Greece. doi:10.1109/BIBE.2013.6701679

Muller, E., Roume, H., Buschart, A., Pinel, N., Laczny, C. C., Satagopam, V., May, P., Lebrun, L., & Wilmes, P. (2013). A model microbial community for Eco-Systems Biology [Poster presentation]. 2nd International Systems Biomedicine Symposium.

Bali, K. K., Venkataramani, V., Satagopam, V., Gupta, P., Schneider, R., & Kuner, R. (2013). Transcriptional mechanisms underlying sensitization of peripheral sensory neurons by Granulocyte-/Granulocyte-macrophage colony stimulating factors. Molecular Pain, 9 (1), 48. doi:10.1186/1744-8069-9-48
Peer Reviewed verified by ORBi

Trefois, C., Fujita, A. K., Ostaszewski, M., Matsuoka, Y., Ghosh, S., Glaab, E., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kodama, A., Satagopam, V., Eifes, S., del Sol Mesa, A., Schneider, R., Kitano, H., & Balling, R. (August 2012). Constructing a comprehensive map of Parkinson’s disease to elucidate underlying mechanisms of its multifaceted molecular pathology [Poster presentation]. The 13th International Conference on Systems Biology.

Satagopam, V., Theodoropoulou, M. C., Stampolakis, C. K., Pavlopoulos, G. A., Papandreou, N. C., Bagos, P. G., Schneider, R., & Hamodrakas, S. J. (2010). GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database: The Journal of Biological Databases and Curation, 2010, 019. doi:10.1093/database/baq019
Peer Reviewed verified by ORBi

Marji, J., O'Donoghue, S. I., McClintock, D., Satagopam, V., Schneider, R., Ratner, D., Worman, H. J., Gordon, L. B., & Djabali, K. (2010). Defective Lamin A-Rb Signaling in Hutchinson-Gilford Progeria Syndrome and Reversal by Farnesyltransferase Inhibition. PLoS ONE, 5 (6). doi:10.1371/journal.pone.0011132
Peer Reviewed verified by ORBi

O'Donoghue, S. I., Horn, H., Pafilis, E., Haag, S., Kuhn, M., Satagopam, V., Schneider, R., & Jensen, L. J. (2010). Reflect: A practical approach to web semantics. Journal of Web Semantics, 8 (2-3), 182-189. doi:10.1016/j.websem.2010.03.003
Peer reviewed

Neumann, B., Walter, T., Heriche, J.-K., Bulkescher, J., Erfle, H., Conrad, C., Rogers, P., Poser, I., Held, M., Liebel, U., Cetin, C., Sieckmann, F., Pau, G., Kabbe, R., Wuensche, A., Satagopam, V., Schmitz, M. H. A., Chapuis, C., Gerlich, D. W., ... Ellenberg, J. (2010). Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature, 464 (7289), 721-727. doi:10.1038/nature08869
Peer Reviewed verified by ORBi

Soldatos, T. G., O'Donoghue, S. I., Satagopam, V., Jensen, L. J., Brown, N. P., Barbosa Da Silva, A., & Schneider, R. (2010). Martini: using literature keywords to compare gene sets. Nucleic Acids Research, 38 (1), 26-38. doi:10.1093/nar/gkp876
Peer Reviewed verified by ORBi

Satagopam, V., Theodoropoulou, M. C., Christos, S. K., Pavlopoulos, G. A., Papandreou, N. C., Bagos, P. G., Schneider, R., & Hamodrakas, S. J. (2010). GPCRs, G-proteins, Effectors and their interactions: Human-gpDB, a database employing advanced visualization tools and data integration techniques. Database: The Journal of Biological Databases and Curation.
Peer Reviewed verified by ORBi

Pavlopoulos, G. A., O'Donoghue, S. I., Satagopam, V., Soldatos, T. G., Pafilis, E., & Schneider, R. (2008). Arena3D: visualization of biological networks in 3D. BMC Systems Biology, 2, 1-2. doi:10.1186/1752-0509-2-104
Peer Reviewed verified by ORBi

Barbosa Da Silva, A., Satagopam, V., Schneider, R., & Ortega, J. M. (2008). Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence. BMC Bioinformatics, 9, 141. doi:10.1186/1471-2105-9-141
Peer Reviewed verified by ORBi

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