![]() ![]() | KLEE, M., AHO, V., MAY, P., Heintz-Buschart, A., LANDOULSI, Z., JONSDOTTIR, S., PAULY, C., PAVELKA, L., DELACOUR, L., KAYSEN, A., Krüger, R., WILMES, P., LEIST, A., Acharya, G., Aguayo, G., Alexandre, M., ALI, M., Ammerlann, W., ARENA, G., ... ZELIMKHANOV, G. (2024). Education as Risk Factor of Mild Cognitive Impairment: The Link to the Gut Microbiome. Journal of Prevention of Alzheimer's Disease. doi:10.14283/jpad.2024.19 ![]() |
![]() ![]() | ACENCIO, M. L., OSTASZEWSKI, M., MAZEIN, A., Rosenstiel, P., Aden, K., Mishra, N., Andersen, V., Sidiropoulos, P., Banos, A., Filia, A., Rahmouni, S., Finckh, A., GU, W., SCHNEIDER, R., & SATAGOPAM, V. (01 November 2023). The SYSCID map: a graphical and computational resource of molecular mechanisms across rheumatoid arthritis, systemic lupus erythematosus and inflammatory bowel disease. Frontiers in Immunology, 14. doi:10.3389/fimmu.2023.1257321 ![]() |
![]() ![]() | Gawron, P., Smula, E., SCHNEIDER, R., & OSTASZEWSKI, M. (February 2023). Exploration and comparison of molecular mechanisms across diseases using MINERVA Net. Protein Science: A Publication of the Protein Society, 32 (2), 4565. doi:10.1002/pro.4565 ![]() |
![]() ![]() | HEMEDAN, A., SCHNEIDER, R., & OSTASZEWSKI, M. (2023). Applications of Boolean modeling to study the dynamics of a complex disease and therapeutics responses. Frontiers in bioinformatics, 3, 1189723. doi:10.3389/fbinf.2023.1189723 ![]() |
![]() ![]() | Gawron, P., Hoksza, D., Piñero, J., Peña-Chilet, M., Esteban-Medina, M., Fernandez-Rueda, J. L., Colonna, V., Smula, E., HEIRENDT, L., Ancien, F., GROUES, V., SATAGOPAM, V., SCHNEIDER, R., Dopazo, J., Furlong, L. I., & OSTASZEWSKI, M. (2023). Visualization of automatically combined disease maps and pathway diagrams for rare diseases. Frontiers in Bioinformatics, 3, 1101505. doi:10.3389/fbinf.2023.1101505 ![]() |
![]() ![]() | MAZEIN, A., ACENCIO, M. L., BALAUR, I.-A., Rougny, A., WELTER, D., Niarakis, A., Ramirez Ardila, D., Dogrusoz, U., GAWRON, P., SATAGOPAM, V., GU, W., KREMER, A., SCHNEIDER, R., & OSTASZEWSKI, M. (2023). A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers in Bioinformatics, 3, 1197310. doi:10.3389/fbinf.2023.1197310 ![]() |
![]() ![]() | VEGA MORENO, C. G., GAWRON, P., Lebioda, J., GROUES, V., KRÜGER, R., SCHNEIDER, R., & SATAGOPAM, V. (20 September 2022). SMASCH: Facilitating multi-appointment scheduling in longitudinal clinical research studies and care programs [Poster presentation]. European Conference on Computational Biology, Sitges, Spain. doi:10.5281/zenodo.6832272 |
![]() ![]() | VEGA MORENO, C. G., KRATOCHVIL, M., SATAGOPAM, V., & SCHNEIDER, R. (2022). Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. In Bioinformatics and Biomedical Engineering (pp. 353--358). Cham, Unknown/unspecified: Springer International Publishing. doi:10.1007/978-3-031-07802-6_30 ![]() |
![]() ![]() | VEGA MORENO, C. G., GAWRON, P., LEBIODA, J., GROUES, V., Matyjaszczyk, P., PAULY, C., SMULA, E., KRÜGER, R., SCHNEIDER, R., & SATAGOPAM, V. (2022). Smart Scheduling (SMASCH): multi-appointment scheduling system for longitudinal clinical research studies. JAMIA Open, 5 (2), 038. doi:10.1093/jamiaopen/ooac038 ![]() |
![]() ![]() | MAZEIN, A., Rougny, A., Karr, J. R., Saez-Rodriguez, J., OSTASZEWSKI, M., & SCHNEIDER, R. (02 September 2021). Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling. Briefings in Bioinformatics, 22 (5). doi:10.1093/bib/bbab103 ![]() |
![]() ![]() | MAZEIN, A., Ivanova, O., BALAUR, I.-A., OSTASZEWSKI, M., Berzhitskaya, V., Serebriyskaya, T., Ligon, T., Hasenauer, J., De Meulder, B., Overall, R. W., Roy, L., Knowles, R. G., Wheelock, C. E., Dahlen, S.-E., Chung, K. F., Adcock, I. M., Roberts, G., Djukanovic, R., Pellet, J., ... eTRIKS Consortium. (March 2021). AsthmaMap: An interactive knowledge repository for mechanisms of asthma. Journal of Allergy and Clinical Immunology, 147 (3), 853 - 856. doi:10.1016/j.jaci.2020.11.032 ![]() |
![]() ![]() | OSTASZEWSKI, M., Niarakis, A., MAZEIN, A., Kuperstein, I., Phair, R., Orta-Resendiz, A., Singh, V., Aghamiri, S. S., ACENCIO, M. L., GLAAB, E., Ruepp, A., Fobo, G., Montrone, C., Brauner, B., Frishman, G., Monraz Gómez, L. C., Somers, J., Hoch, M., Kumar Gupta, S., ... SCHNEIDER, R. (2021). COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology, 17 (10), 10387. doi:10.15252/msb.202110387 ![]() |
![]() ![]() | KRATOCHVIL, M.* , HEIRENDT, L.* , Wilken, S. E., PUSA, T., Arreckx, S., NORONHA, A., van Aalst, M., SATAGOPAM, V., Ebenhöh, O., SCHNEIDER, R., TREFOIS, C., & GU, W. (2021). COBREXA.jl: constraint-based reconstruction and exascale analysis. Bioinformatics. doi:10.1093/bioinformatics/btab782 ![]() * These authors have contributed equally to this work. |
![]() ![]() | Badimon, L., Robinson, E. L., Jusic, A., Carpusca, I., deWindt, L. J., Emanueli, C., Ferdinandy, P., {"lastName":"GU", F. W. A. U. O. L. U. E. L. C. F. S. B. L. U. E. B. C. T., Gyöngyösi, M., Hackl, M., Karaduzovic-Hadziabdic, K., Lustrek, M., Martelli, F., Nham, E., Potočnjak, I., SATAGOPAM, V., SCHNEIDER, R., Thum, T., DEVAUX, Y., & CA17129, O. B. O. E. U.-C. C. A. (2021). Cardiovascular RNA markers and artificial intelligence may improve COVID-19 outcome: a position paper from the EU-CardioRNA COST Action CA17129. Cardiovascular Research. doi:10.1093/cvr/cvab094 ![]() |
![]() ![]() | Bernhofer, M., Dallago, C., Karl, T., SATAGOPAM, V., Heinzinger, M., Littmann, M., Olenyi, T., Qiu, J., Schütze, K., Yachdav, G., Ashkenazy, H., Ben-Tal, N., Bromberg, Y., Goldberg, T., Kajan, L., O’Donoghue, S., Sander, C., Schafferhans, A., Schlessinger, A., ... Rost, B. (2021). PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Research. doi:10.1093/nar/gkab354 ![]() |
![]() ![]() | WELTER, D., VEGA MORENO, C. G., BIRYUKOV, M., GROUES, V., GHOSH, S., SCHNEIDER, R., & SATAGOPAM, V. (27 November 2020). Supporting findability of COVID-19 research with large-scale text mining of scientific publications [Poster presentation]. International FAIR Convergence Symposium. doi:10.5281/zenodo.4300199 |
![]() ![]() | KRATOCHVIL, M.* , Hunewald, O.* , HEIRENDT, L., Verissimo, V., Vondrášek, J., SATAGOPAM, V., SCHNEIDER, R., TREFOIS, C., & Ollert, M. (18 November 2020). GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets. GigaScience, 9 (11). doi:10.1093/gigascience/giaa127 ![]() * These authors have contributed equally to this work. |
![]() ![]() | VEGA MORENO, C. G., GROUES, V., OSTASZEWSKI, M., SATAGOPAM, V., & SCHNEIDER, R. (04 September 2020). BioKC: a platform for quality controlled curation and annotation of systems biology models [Paper presentation]. European Conference on Computational Biology. doi:10.5281/zenodo.4033071 |
![]() ![]() | OSTASZEWSKI, M., MAZEIN, A., Gillespie, M., Kuperstein, I., Niarakis, A., Hermjakob, H., Pico, A., Willinghagen, E., Evelo, C., Hasenauer, J., Schreiber, F., Dräger, A., Demir, E., Wolkenhauer, O., Furlong, L., Barillot, E., Dopazo, J., Orta-Resendiz, A., Messina, F., ... SCHNEIDER, R. (2020). COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific Data. doi:10.1038/s41597-020-0477-8 ![]() |
![]() ![]() | HEMEDAN, A., Abd Elaziz, M., Jiao, P., Alavi, A. H., Bahgat, M., OSTASZEWSKI, M., SCHNEIDER, R., Ghazy, H. A., Ewees, A. A., & Lu, S. (19 March 2020). Prediction of the Vaccine-derived Poliovirus Outbreak Incidence: A Hybrid Machine Learning Approach. Scientific Reports, 10 (1), 5058. doi:10.1038/s41598-020-61853-y ![]() |
![]() ![]() | VEGA MORENO, C. G., GROUES, V., OSTASZEWSKI, M., SCHNEIDER, R., & SATAGOPAM, V. (2020). BioKC: a collaborative platform for systems biology model curation and annotation. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/44411. doi:10.1101/2020.10.01.322438 |
![]() ![]() | Weghuber, D., Forslund, A., Ahlström, H., Bergström, K., Cadamuro, J., Ciba, I., Dahlborn, M., Heu, V., Hofmann, J., Kristinsson, H., Kullberg, J., Ladinger, A., Lagler, F., Lidström, M., Manell, H., Meirik, M., Morwald, K., Roomp, SCHNEIDER, R., ... Bergsten, P. (2020). A six month randomized, double-blind, placebo-controlled trial of weekly exenatide in adolescents with obesity. Pediatric Obesity. doi:10.1111/ijpo.12624 ![]() |
![]() ![]() | BECKER, R.* , ALPER, P.* , GROUES, V., MUNOZ, S., JAROSZ, Y., LEBIODA, J., REGE, K., TREFOIS, C., SATAGOPAM, V., & SCHNEIDER, R. (04 December 2019). DAISY: A Data Information System for accountability under the General Data Protection Regulation. GigaScience, 8 (12). doi:10.1093/gigascience/giz140 ![]() * These authors have contributed equally to this work. |
![]() ![]() | Berghuis, B., Stapleton, C., Sonsma, A., Hulst, J., de Haan, G., Lindhout, D., Demurtas, R., BALLING, R., SCHNEIDER, R., EpiPGX Consortium, & KRAUSE, R. (2019). A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine. Epilepsia Open. doi:10.1002/epi4.12297 ![]() |
![]() ![]() | Brosseron, F., & SCHNEIDER, R. (2019). Multicenter Alzheimer's and Parkinson's disease immune biomarker verification study. Alzheimer's and Dementia: the Journal of the Alzheimer's Association. doi:10.1016/j.jalz.2019.07.018 ![]() |
![]() ![]() | Abd Elaziz, M., Hemedan, A., OSTASZEWSKI, M., SCHNEIDER, R., & Lu, S. (2019). Optimization ACE inhibition activity in hypertension based on random vector functional link and sine-cosine algorithm. Chemometrics and Intelligent Laboratory Systems. doi:10.1016/j.chemolab.2019.05.009 ![]() |
![]() ![]() | HOKSZA, D., GAWRON, P., OSTASZEWSKI, M., Hausenauer, J., & SCHNEIDER, R. (2019). Closing the gap between formats for storing layout information in systems biology. Briefings in Bioinformatics. doi:10.1093/bib/bbz067 ![]() |
![]() ![]() | GU, W., Yildirimman, R., Van der Stuyft, E., Verbeeck, D., HERZINGER, S., SATAGOPAM, V., Barbosa-Silva, A., SCHNEIDER, R., Lange, B., Lehrach, H., Guo, Y., Henderson, D., Rowe, A., & on behalf of the IMI OncoTrack and the IMI eTRIKS consortia. (2019). Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. BMC Bioinformatics, 20 (1), 164. doi:10.1186/s12859-019-2748-y ![]() |
![]() ![]() | HOKSZA, D., GAWRON, P., OSTASZEWSKI, M., SMULA, E., & SCHNEIDER, R. (2019). MINERVA API and plugins: opening molecular network analysis and visualization to the community. Bioinformatics. doi:10.1093/bioinformatics/btz286 ![]() |
![]() ![]() | NORONHA, A., MODAMIO CHAMARRO, J., JAROSZ, Y., GUERARD, E., Sompairac, N., PRECIAT GONZALEZ, G. A., DANIELSDOTTIR, A. D., KRECKE, M., MERTEN, D., HARALDSDOTTIR, H., HEINKEN, A. K., HEIRENDT, L., MAGNUSDOTTIR, S., RAVCHEEV, D., SAHOO, S., GAWRON, P., FRISCIONI, L., GARCIA SANTA CRUZ, B., Prendergast, M., ... THIELE, I. (2018). The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Research. doi:10.1093/nar/gky992 ![]() |
![]() ![]() | HERZINGER, S., GROUES, V., GU, W., SATAGOPAM, V., BANDA, P., TREFOIS, C., & SCHNEIDER, R. (2018). Fractalis: A scalable open-source service for platform-independent interactive visual analysis of biomedical data. GigaScience. doi:10.1093/gigascience/giy109 ![]() |
![]() ![]() | HOKSZA, D., GAWRON, P., OSTASZEWSKI, M., & SCHNEIDER, R. (2018). MolArt: a molecular structure annotation and visualization tool. Bioinformatics. doi:10.1093/bioinformatics/bty489 ![]() |
![]() ![]() | OSTASZEWSKI, M., GEBEL, S., Kuperstein, I., Mazein, A., Zinovyev, A., Dogrusoz, U., Hasenauer, J., FLEMING, R. M., Le Novere, N., GAWRON, P., Ligon, T., Niarakis, A., Nickerson, D., Weindl, D., BALLING, R., Barillot, E., Auffray, C., & SCHNEIDER, R. (2018). Community-driven roadmap for integrated disease maps. Briefings in Bioinformatics. doi:10.1093/bib/bby024 ![]() |
![]() ![]() | Mazein, A., OSTASZEWSKI, M., Kuperstein, I., Watterson, S., Le Novere, N., Lefaudeux, D., De Meulder, B., Pellet, J., Balaur, I., Saqi, M., Nogueira, M. M., He, F., Parton, A., Lemonnier, N., GAWRON, P., GEBEL, S., Hainaut, P., Ollert, M., Dogrusoz, U., ... Auffray, C. (2018). Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms. NPJ Systems Biology and Applications, 4, 21. doi:10.1038/s41540-018-0059-y ![]() |
![]() ![]() | Barbosa-Silva, A., Bratfalean, D., GU, W., SATAGOPAM, V., Houston, P., Becnel, L. B., Eifes, S., Richard, F., Tielmann, A., HERZINGER, S., REGE, K., BALLING, R., Peeters, P., & SCHNEIDER, R. (2018). Presenting and Sharing Clinical Data using the eTRIKS Standards Master Tree for tranSMART. Bioinformatics, 809. doi:10.1093/bioinformatics/bty809 ![]() |
![]() ![]() | OSTASZEWSKI, M., KIEFFER, E., Danoy, G., SCHNEIDER, R., & BOUVRY, P. (2018). Clustering approaches for visual knowledge exploration in molecular interaction networks. BMC Bioinformatics, 19 (1), 308. doi:10.1186/s12859-018-2314-z ![]() |
![]() ![]() | Winterer, G., ANDROSOVA, G., Bender, O., Boraschi, D., Borchers, F., Dschietzig, T. B., Feinkohl, I., Fletcher, P., Gallinat, J., Hadzidiakos, D., Haynes, J. D., Heppner, F., Hetzer, S., Hendrikse, J., Ittermann, B., Kant, I. M. J., Kraft, A., Krannich, A., KRAUSE, R., ... Zacharias, N. (2018). Personalized risk prediction of postoperative cognitive impairment - rationale for the EU-funded BioCog project. European Psychiatry, 50, 34-39. doi:10.1016/j.eurpsy.2017.10.004 ![]() |
![]() ![]() | HERZINGER, S., GU, W., SATAGOPAM, V., Eifes, S., REGE, K., BARBOSA DA SILVA, A., & SCHNEIDER, R. (2017). SmartR: An open-source platform for interactive visual analytics for translational research data. Bioinformatics. doi:10.1093/bioinformatics/btx137 ![]() |
![]() ![]() | Staaf, J., Labmayr, V., Paulmichl, K., Manell, H., SCHNEIDER, R., & ROOMP, K. (2017). Pancreatic Fat Is Associated With Metabolic Syndrome and Visceral Fat but Not Beta-Cell Function or Body Mass Index in Pediatric Obesity. Pancreas. doi:10.1097/MPA.0000000000000771 ![]() |
![]() ![]() | Da Silveira, M., Pruski, C., & SCHNEIDER, R. (Eds.). (2017). Data Integration in the Life Sciences. Springer Verlag. |
![]() ![]() | Gawron, P., OSTASZEWSKI, M., SATAGOPAM, V., GEBEL, S., Mazein, A., Kuzma, M., Zorzan, S., McGee, F., Otjacques, B., BALLING, R., & SCHNEIDER, R. (2016). MINERVA—a platform for visualization and curation of molecular interaction networks. NPJ Systems Biology and Applications. doi:10.1038/npjsba.2016.20 ![]() |
![]() ![]() | Auffray, C., BALLING, R., Barroso, I., Bencze, L., Benson, M., Bergeron, J., Bernal-Delgado, E., Blomberg, N., Bock, C., Conesa, A., Del Signore, S., Delogne, C., Devilee, P., Di Meglio, A., Eijkemans, M., Flicek, P., Graf, N., Grimm, V., Guchelaar, H.-J., ... Zanetti, G. (2016). Making sense of big data in health research: Towards an EU action plan. Genome Medicine, 8 (1), 71. doi:10.1186/s13073-016-0323-y ![]() |
![]() ![]() | NORONHA, A., Danielsdóttir, A. D., Jóhannsson, F., Jónsdóttir, S., Jarlsson, S., Gunnarsson, J. P., Brynjólfsson, S., GAWRON, P., SCHNEIDER, R., THIELE, I., & FLEMING, R. M. (2016). ReconMap: An interactive visualisation of human metabolism. Bioinformatics. doi:10.1093/bioinformatics/btw667 ![]() |
![]() ![]() | SATAGOPAM, V., GU, W., Eifes, S., Gawron, P., OSTASZEWSKI, M., GEBEL, S., Barbosa-Silva, A., BALLING, R., & SCHNEIDER, R. (2016). Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data, 4 (2), 97-108. doi:10.1089/big.2015.0057 ![]() |
![]() ![]() | Hofmann-Apitius, M., Ball, G., GEBEL, S., de Bono, SCHNEIDER, R., Page, M., Kodamulli, A., Younesi, E., Ebeling, C., Tegner, J., & Canard, L. (07 December 2015). Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders. International Journal of Molecular Sciences, 16 (12), 29179-29206. doi:10.3390/ijms161226148 ![]() |
![]() ![]() | GLAAB, E., & SCHNEIDER, R. (15 June 2015). Shared alterations in the human brain transcriptome during adult aging and in Parkinson's disease [Poster presentation]. EMBO Symposium on Mechanisms of Neurodegeneration 2015, Heidelberg, Germany. |
![]() ![]() | GLAAB, E., & SCHNEIDER, R. (February 2015). Comparative pathway and network analysis of brain transcriptome changes during adult aging and in Parkinson's disease. Neurobiology of Disease, 74, 1-13. doi:10.1016/j.nbd.2014.11.002 ![]() |
![]() ![]() | NIELSEN, S. S., DANOY, G., Jurkowski, W., Jimenez Laredo, J. L., SCHNEIDER, R., Talbi, E.-G., & BOUVRY, P. (2015). A Novel Multi-objectivisation Approach for Optimising the Protein Inverse Folding Problem. In Applications of Evolutionary Computation: 18th European Conference, EvoApplications 2015, Copenhagen, Denmark, April 8-10, 2015, Proceedings. ![]() |
![]() ![]() | GLAAB, E., & SCHNEIDER, R. (2015). RepExplore: Addressing technical replicate variance in proteomics and metabolomics data analysis. Bioinformatics, 31 (13), 2235. doi:10.1093/bioinformatics/btv127 ![]() |
![]() ![]() | Jimenez-Sanchez, M., Lam, W., Hannus, M., Sonnichsen, B., Imarisio, S., Fleming, A., Tarditi, A., Menzies, F., Ed Dami, T., Xu, C., Gonzalez-Couto, E., Lazzeroni, G., Heitz, F., Diamanti, D., Massai, L., SATAGOPAM, V., Marconi, G., Caramelli, C., Nencini, A., ... Rubinsztein, D. C. (2015). siRNA screen identifies QPCT as a druggable target for Huntington's disease. Nature Chemical Biology, 11 (5), 347–354. doi:10.1038/nchembio.1790 ![]() |
![]() ![]() | ANDROSOVA, G., KRAUSE, R., Winterer, G., & SCHNEIDER, R. (2015). Biomarkers of postoperative delirium and cognitive dysfunction. Frontiers in Aging Neuroscience, 7 (112). doi:10.3389/fnagi.2015.00112 ![]() |
![]() ![]() | KRISHNA, A., BIRYUKOV, M., TREFOIS, C., ANTONY, P., Hussong, R., LIN, J., Heinäniemi, M., Glusman, G., Köglsberger, S., BOYD, O., van den Berg, B. H. J., Linke, D., Huang, D., Wang, K., Hood, L., Tholey, A., SCHNEIDER, R., GALAS, D. J., BALLING, R., & MAY, P. (20 December 2014). Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson’s disease. BMC Genomics, 15 (1154). doi:10.1186/1471-2164-15-1154 ![]() |
![]() ![]() | TREFOIS, C., JAROSZ, Y., GU, W., SATAGOPAM, V., CORONADO, S., & SCHNEIDER, R. (December 2014). Reproducible Research Results R3 [Poster presentation]. 9th Benelux Bioinformatics Conference, Luxembourg, Luxembourg. |
![]() ![]() | Papanikolaou, N., Pavlopoulos, G. A., Pafilis, E., Theodosiou, T., SCHNEIDER, R., Satagopam, V. P., Ouzounis, C., Eliopoulos, A., Promponas, V., & Iliopoulos, I. (2014). BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinformatics. doi:10.1093/bioinformatics/btu524 ![]() |
![]() ![]() | Yachdav, G., Kloppman, Kajan, Hecht, Goldberg, Hamp, Honigschmid, Schafferhans, Roos, M., Bernhofer, Richter, Ashkenazy, Punta, Schlessinger, Bromberg, SCHNEIDER, R., Vriend, Sander, Ben-Tal, & Rost. (05 May 2014). PredictProtein--an open resource for online prediction of protein structural and functional features. Nucleic Acids Research, 42 (8). doi:10.1093/nar/gku366 ![]() |
![]() ![]() | GLAAB, E., & SCHNEIDER, R. (2014). Addressing Technical Replicate Variance in Omics Data Analysis [Poster presentation]. Benelux Bioinformatics Conference 2014. |
![]() ![]() | NIELSEN, S. S., JURKOWSKI, W., DANOY, G., JIMENEZ LAREDO, J. L., SCHNEIDER, R., Talbi, E.-G., & BOUVRY, P. (2014). Evolutionary Multi-Objective Optimisation with Quantile Constraint for the Protein Structure Similarity Problem [Paper presentation]. 5th International Conference on Metaheuristics and Nature Inspired Computing (META). |
![]() ![]() | NIELSEN, S. S., JURKOWSKI, W., DANOY, G., JIMENEZ LAREDO, J. L., SCHNEIDER, R., Talbi, E.-G., & BOUVRY, P. (2014). Evolutionary multi objective optimisation with diversity as objective for the protein structure similarity problem [Paper presentation]. Natural computing for protein structure prediction Workshop, 13th International Conference on Parallel Problem Solving From Nature (PPSN), Ljubljana, Slovenia. |
![]() ![]() | Davey, N. E., SATAGOPAM, V., Santiago-Mozos, S., Villacorta-Martin, C., Bharat, T. A. M., SCHNEIDER, R., & Briggs, J. A. G. (2014). The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data. PLoS Computational Biology. doi:10.1371/journal.pcbi.1003951 ![]() |
![]() ![]() | Fujita, K. A., OSTASZEWSKI, M., Matsuoka, Y., Ghosh, S., GLAAB, E., TREFOIS, C., CRESPO, I., PERUMAL, T. M., JURKOWSKI, W., ANTONY, P., DIEDERICH, N., BUTTINI, M., Kodama, A., SATAGOPAM, V., EIFES, S., DEL SOL MESA, A., SCHNEIDER, R., Kitano, H., & BALLING, R. (2014). Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map. Molecular Neurobiology. doi:10.1007/s12035-013-8489-4 ![]() |
![]() ![]() | BINDER, J. X., Pletscher-Frankild, S., Tsafou, K., Stolte, C., O'Donoghue, S. I., SCHNEIDER, R., & Jensen, L. J. (2014). COMPARTMENTS: unification and visualization of protein subcellular localization evidence. Database: The Journal of Biological Databases and Curation, 2014, 012. doi:10.1093/database/bau012 ![]() |
![]() ![]() | OSTASZEWSKI, M., Fujita, K., Matsuoka, Y., Ghosh, S., GLAAB, E., TREFOIS, C., CRESPO, I., PERUMAL, T. M., JURKOWSKI, W., ANTONY, P., DIEDERICH, N., BUTTINI, M., KOLODKIN, A., Kodama, A., SATAGOPAM, V., BIRYUKOV, M., EIFES, S., DEL SOL MESA, A., SCHNEIDER, R., ... BALLING, R. (09 March 2013). The Parkinson's Disease Map: A Framework for Integration, Curation and Exploration of Disease-related Pathways [Poster presentation]. The 11th International Conference on Alzheimer's & Parkinson's Diseases, Florence, Italy. |
![]() ![]() | Chowdhury, A., SATAGOPAM, V., Manukyan, L., Artemenko, K. A., Fung, Y. M. E., SCHNEIDER, R., Bergquist, J., & Bergsten, P. (2013). Signaling in Insulin-Secreting MIN6 Pseudoislets and Monolayer Cells. Journal of Proteome Research. doi:10.1021/pr400864w ![]() |
![]() ![]() | Bali, K. K., Selvaraj, D., SATAGOPAM, V., Lu, J., SCHNEIDER, R., & Kuner, R. (2013). Genome-wide identification and functional analyses of microRNA signatures associated with cancer pain. EMBO Molecular Medicine, 5 (11), 1740-58. doi:10.1002/emmm.201302797 ![]() |
![]() ![]() | Jimenez, R., Albar, J., Bhak, J., Blatter, M.-C., Blicher, T., Brazas, M., Brooksbank, C., Budd, A., Rivas, J. D. L., Dreyer, J., van Driel, M. A., Dunn, M. J., Fernandes, P. L., van Gelder, C. W. G., Hermjakob, H., Ioannidis, V., Judge, D. P., Kahlem, P., Korpelainen, E., ... Corpas, M. (2013). IAnn: An event sharing platform for the life sciences. Bioinformatics, 1-2. doi:10.1093/bioinformatics/btt306 ![]() |
![]() ![]() | Pavlopoulos, G. A., Oulas, A., Iacucci, E., Sifrim, A., Moreau, Y., SCHNEIDER, R., Aerts, J., & Iliopoulos, I. (2013). Unraveling genomic variation from next generation sequencing data. BioData Mining, 6 (1), 13. doi:10.1186/1756-0381-6-13 ![]() |
![]() ![]() | Ballereau, S., GLAAB, E., KOLODKIN, A., Chaiboonchoe, A., BIRYUKOV, M., VLASSIS, N., Ahmed, H., Pellet, J., Baliga, N., HOOD, L., SCHNEIDER, R., BALLING, R., & Auffray, C. (2013). Functional Genomics, Proteomics, Metabolomics and Bioinformatics for Systems Biology. In A. Prokop & B. Csukás (Eds.), Systems Biology: Integrative Biology and Simulation Tools. Springer. doi:10.1007/978-94-007-6803-1_1 ![]() |
![]() ![]() | Secrier, M., & SCHNEIDER, R. (2013). Visualizing time-related data in biology, a review. Briefings in Bioinformatics. doi:10.1093/bib/bbt021 ![]() |
![]() ![]() | Simonetti, M., Hagenston, A., Vardeh, D., Freitag, E., Mauceri, D., Lu, J., SATAGOPAM, V., SCHNEIDER, R., Costigan, M., Bading, H., & Kuner, R. (2013). Nuclear calcium signaling in spinal neurons drives a genomic program required for persistent inflammatory pain. Neuron, 77 (1), 43-57. doi:10.1016/j.neuron.2012.10.037 ![]() |
![]() ![]() | Secrier, M., & SCHNEIDER, R. (2013). PhenoTimer: Software for the Visual Mapping of Time-Resolved Phenotypic Landscapes. PLoS ONE, 8 (8), 72361. doi:10.1371/journal.pone.0072361 ![]() |
![]() ![]() | Pafilis, E., Pavlopoulos, G., SATAGOPAM, V., Papanikolaou, N., Horn, H., Arvanitidis, C., Jensen, L. J., SCHNEIDER, R., & Iliopoulos, I. (2013). OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction [Poster presentation]. 13th IEEE International Conference on Bioinformatics and Bioengineering (BIBE13), Chania, Greece. doi:10.1109/BIBE.2013.6701679 |
![]() ![]() | GEORGATOS, F., Ballereau, S., Pellet, J., Ghanem, M., Price, N., HOOD, L., Guo, Y. K., Boutigny, D., Auffray, C., BALLING, R., & SCHNEIDER, R. (2013). Computational infrastructures for data and knowledge management in systems biology. In A. Prokop & B. Csukás (Eds.), Systems Biology: Integrative Biology and Simulation Tools. Springer. doi:10.1007/978-94-007-6803-1_13 ![]() |
![]() ![]() | Bali, K. K., Venkataramani, V., SATAGOPAM, V., Gupta, P., SCHNEIDER, R., & Kuner, R. (2013). Transcriptional mechanisms underlying sensitization of peripheral sensory neurons by Granulocyte-/Granulocyte-macrophage colony stimulating factors. Molecular Pain, 9 (1), 48. doi:10.1186/1744-8069-9-48 ![]() |
TREFOIS, C., Fujita, A. K., OSTASZEWSKI, M., Matsuoka, Y., Ghosh, S., GLAAB, E., Crespo, I., Perumal, T. M., Jurkowski, W., ANTONY, P., DIEDERICH, N., BUTTINI, M., Kodama, A., SATAGOPAM, V., EIFES, S., DEL SOL MESA, A., SCHNEIDER, R., Kitano, H., & BALLING, R. (August 2012). Constructing a comprehensive map of Parkinson’s disease to elucidate underlying mechanisms of its multifaceted molecular pathology [Poster presentation]. The 13th International Conference on Systems Biology. |
![]() ![]() | Corpas, M., Fatumo, S., & SCHNEIDER, R. (2012). How Not to Be a Bioinformatician. Source Code for Biology and Medicine. doi:10.1186/1751-0473-7-3 ![]() |
![]() ![]() | Secrier, M., Pavlopoulos, G. A., Aerts, J., & SCHNEIDER, R. (2012). Arena3D: visualizing time-driven phenotypic differences in biological systems. BMC Bioinformatics, (13), 45. doi:10.1186/1471-2105-13-45 ![]() |
![]() ![]() | Iacucci, E., Tranchevent, L. C., Popovic, D., Pavlopoulos, G. A., De Moor, B., SCHNEIDER, R., & Moreau, Y. (2012). ReLiance: a machine learning and literature-based prioritization of receptor—ligand pairings. Bioinformatics, 28 (18), 569-i574. doi:10.1093/bioinformatics/bts391 ![]() |
![]() ![]() | Rost, B., Gaasterland, T., Lengauer, T., Linial, M., Markel, S., McKay, B. J. M., SCHNEIDER, R., Horton, P., & Kelso, J. (2012). Paving the future: finding suitable ISMB venues. Bioinformatics, 28 (19), 2556-9. doi:10.1093/bioinformatics/bts420 ![]() |
![]() ![]() | Soldatos, T. G., O’Donoghue, S. I., Satagopam, V. P., Barbosa-Silva, A., Pavlopoulos, G. A., Wanderley-Nogueira, A. C., Soares-Cavalcanti, N. M., & SCHNEIDER, R. (2012). Caipirini: using gene sets to rank literature. BioData Mining, 5 (1). doi:10.1186/1756-0381-5-1 ![]() |
![]() ![]() | Michalopoulos, I., Pavlopoulos, G., Malatras, A., Karelas, A., Kostadima, M.-A., SCHNEIDER, R., & Kossida, S. (2012). Human gene correlation analysis (HGCA): A tool for the identification of transcriptionally co-expressed genes. BMC Research Notes, 5 (265), 1-11. doi:10.1186/1756-0500-5-265 ![]() |
![]() ![]() | GLAAB, E., & SCHNEIDER, R. (2012). PathVar: analysis of gene and protein expression variance in cellular pathways using microarray data. Bioinformatics, 446-447. doi:10.1093/bioinformatics/btr656 ![]() |
![]() ![]() | GLAAB, E., Baudot, A., Krasnogor, N., SCHNEIDER, R., & Valencia, A. (2012). EnrichNet: network-based gene set enrichment analysis. Bioinformatics, 28 (18), 451-i457. doi:10.1093/bioinformatics/bts389 ![]() |
![]() ![]() | Azuaje, F. J., Heymann, M., Ternes, A. M., WIENECKE-BALDACCHINO, A., Struck, D., Moes, D., & SCHNEIDER, R. (2012). Bioinformatics as a driver, not a passenger, of translational biomedical research: Perspectives from the 6th Benelux bioinformatics conference. Journal of Clinical Bioinformatics, 2 (7). doi:10.1186/2043-9113-2-7 ![]() |
![]() ![]() | Pavlopoulos, G. A., Secrier, M., Moschopoulos, C. N., Soldatos, T. G., Kossida, S., Aerts, J., SCHNEIDER, R., & Bagos, P. G. (2011). Using graph theory to analyze biological networks. BioData Mining, 4 (10), 1-27. doi:10.1186/1756-0381-4-10 ![]() |
![]() ![]() | Pavlopoulos, G. A., Hooper, S. D., Sifrim, A., SCHNEIDER, R., & Aerts, J. (2011). Medusa: A tool for exploring and clustering biological networks. BMC Research Notes, 4 (1), 384. doi:10.1186/1756-0500-4-384 ![]() |
![]() ![]() | Moschopoulos, C. N., Pavlopoulos, G. A., Iacucci, E., Aerts, J., Likothanassis, S., SCHNEIDER, R., & Kossida, S. (2011). Which clustering algorithm is better for predicting protein complexes? BMC Research Notes, (4), 549. doi:10.1186/1756-0500-4-549 ![]() |
![]() ![]() | Boerner, K., Hermle, J., Sommer, C., Brown, N. P., Knapp, B., Glass, B., Kunkel, J., Torralba, G., Reymann, J., Beil, N., Beneke, J., Pepperkok, R., SCHNEIDER, R., Ludwig, T., Hausmann, M., Hamprecht, F., Erfle, H., Kaderali, L., Kraeusslich, H.-G., & Lehmann, M. J. (2010). From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication. Biotechnology Journal, 5 (1), 39-49. doi:10.1002/biot.200900226 ![]() |
![]() ![]() | Gehlenborg, N., O'Donoghue, S. I., Baliga, N. S., Goesmann, A., Hibbs, M. A., Kitano, H., Kohlbacher, O., Neuweger, H., SCHNEIDER, R., Tenenbaum, D., & Gavin, A.-C. (2010). Visualization of omics data for systems biology. Nature Methods, 7 (3), 56-68. doi:10.1038/NMETH.1436 ![]() |
![]() ![]() | Lister, A. L., Datta, R. S., Hofmann, O., KRAUSE, R., Kuhn, M., Roth, B., & SCHNEIDER, R. (2010). Live Coverage of Scientific Conferences Using Web Technologies. PLoS Computational Biology, 6 (1), 1-2. doi:10.1371/journal.pcbi.1000563 ![]() |
![]() ![]() | Joosten, R., Beek, T., Krieger, E., Hekkelman, M., Hooft, R., SCHNEIDER, R., Sander, S., & Vriend, G. (2010). A series of PDB related databases for everyday needs. Nucleic Acids Research, 39 (1), 411-419. doi:10.1093/nar/gkq1105 ![]() |
![]() ![]() | Lister, A. L., Datta, R. S., Hofmann, O., KRAUSE, R., Kuhn, M., Roth, B., & SCHNEIDER, R. (2010). Live Coverage of Intelligent Systems for Molecular Biology. PLoS Computational Biology, 6. doi:10.1371/journal.pcbi.1000640 ![]() |
![]() ![]() | SATAGOPAM, V., Theodoropoulou, M. C., Stampolakis, C. K., Pavlopoulos, G. A., Papandreou, N. C., Bagos, P. G., SCHNEIDER, R., & Hamodrakas, S. J. (2010). GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database: The Journal of Biological Databases and Curation, 2010, 019. doi:10.1093/database/baq019 ![]() |
![]() ![]() | Marji, J., O'Donoghue, S. I., McClintock, D., SATAGOPAM, V., SCHNEIDER, R., Ratner, D., Worman, H. J., Gordon, L. B., & Djabali, K. (2010). Defective Lamin A-Rb Signaling in Hutchinson-Gilford Progeria Syndrome and Reversal by Farnesyltransferase Inhibition. PLoS ONE, 5 (6). doi:10.1371/journal.pone.0011132 ![]() |
![]() ![]() | O'Donoghue, S. I., Horn, H., Pafilis, E., Haag, S., Kuhn, M., SATAGOPAM, V., SCHNEIDER, R., & Jensen, L. J. (2010). Reflect: A practical approach to web semantics. Journal of Web Semantics, 8 (2-3), 182-189. doi:10.1016/j.websem.2010.03.003 ![]() |
![]() ![]() | Neumann, B., Walter, T., Heriche, J.-K., Bulkescher, J., Erfle, H., Conrad, C., Rogers, P., Poser, I., Held, M., Liebel, U., Cetin, C., Sieckmann, F., Pau, G., Kabbe, R., Wuensche, A., SATAGOPAM, V., Schmitz, M. H. A., Chapuis, C., Gerlich, D. W., ... Ellenberg, J. (2010). Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature, 464 (7289), 721-727. doi:10.1038/nature08869 ![]() |
![]() ![]() | SATAGOPAM, V., Theodoropoulou, M. C., Christos, S. K., Pavlopoulos, G. A., Papandreou, N. C., Bagos, P. G., SCHNEIDER, R., & Hamodrakas, S. J. (2010). GPCRs, G-proteins, Effectors and their interactions: Human-gpDB, a database employing advanced visualization tools and data integration techniques. Database: The Journal of Biological Databases and Curation. ![]() |
![]() ![]() | BARBOSA DA SILVA, A., Soldatos, T. G., Magalhaes, I. L. F., Pavlopoulos, G. A., Fontaine, J.-F., Andrade-Navarro, M. A., SCHNEIDER, R., & Ortega, J. M. (2010). LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships. BMC Bioinformatics, 11, 70. doi:10.1186/1471-2105-11-70 ![]() |
![]() ![]() | Pavlopoulos, G. A., Soldatos, T. G., BARBOSA DA SILVA, A., & SCHNEIDER, R. (2010). A reference guide for tree analysis and visualization. BioData Mining, 3 (1), 1. doi:10.1186/1756-0381-3-1 ![]() |
![]() ![]() | Soldatos, T. G., O'Donoghue, S. I., SATAGOPAM, V., Jensen, L. J., Brown, N. P., BARBOSA DA SILVA, A., & SCHNEIDER, R. (2010). Martini: using literature keywords to compare gene sets. Nucleic Acids Research, 38 (1), 26-38. doi:10.1093/nar/gkp876 ![]() |
![]() ![]() | Moschopoulos, C. N., Pavlopoulos, G. A., SCHNEIDER, R., Likothanassis, S. D., & Kossida, S. (2009). GIBA: a clustering tool for detecting protein complexes. BMC Bioinformatics, 10, 1-2. doi:10.1186/1471-2105-10-S6-S11 ![]() |
![]() ![]() | Pavlopoulos, G. A., Moschopoulos, C. N., Hooper, S. D., SCHNEIDER, R., & Kossida, S. (2009). jClust: a clustering and visualization toolbox. Bioinformatics, 25 (15), 1994-1996. doi:10.1093/bioinformatics/btp330 ![]() |
![]() ![]() | Pafilis, E., O'Donoghue, S. I., Jensen, L. J., Horn, H., Kuhn, M., Brown, N. P., & SCHNEIDER, R. (2009). Reflect: augmented browsing for the life scientist. Nature Biotechnology, 27 (6), 508-510. doi:10.1038/nbt0609-508 ![]() |
![]() ![]() | Pavlopoulos, G. A., Pafilis, E., Kuhn, M., Hooper, S. D., & SCHNEIDER, R. (2009). OnTheFly: a tool for automated document-based text annotation, data linking and network generation. Bioinformatics, 25 (7), 977-978. doi:10.1093/bioinformatics/btp081 ![]() |
![]() ![]() | Bromberg, Y., Yachdav, G., Ofran, Y., SCHNEIDER, R., & Rost, B. (2009). New in protein structure and function annotation: Hotspots, single nucleotide polymorphisms and the 'Deep Web'. Current Opinion in Drug Discovery and Development, 12 (3), 408-419. ![]() |
![]() ![]() | Guenther, S., Kuhn, M., Dunkel, M., Campillos, M., Senger, C., Petsalaki, E., Ahmed, J., Urdiales, E. G., Gewiess, A., Jensen, L. J., SCHNEIDER, R., Skoblo, R., Russell, R. B., Bourne, P. E., Bork, P., & Preissner, R. (2008). SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Research, 36 (SI), 919-922. doi:10.1093/nar/gkm862 ![]() |
![]() ![]() | Pavlopoulos, G. A., Wegener, A. L., & SCHNEIDER, R. (2008). A survey of visualization tools for biological network analysis. BioData Mining. doi:10.1186/1756-0381-1-12 ![]() |
![]() ![]() | Pavlopoulos, G. A., O'Donoghue, S. I., SATAGOPAM, V., Soldatos, T. G., Pafilis, E., & SCHNEIDER, R. (2008). Arena3D: visualization of biological networks in 3D. BMC Systems Biology, 2, 1-2. doi:10.1186/1752-0509-2-104 ![]() |
![]() ![]() | BARBOSA DA SILVA, A., SATAGOPAM, V., SCHNEIDER, R., & Ortega, J. M. (2008). Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence. BMC Bioinformatics, 9, 141. doi:10.1186/1471-2105-9-141 ![]() |
BARBOSA DA SILVA, A., Pafilis, E., Ortega, J. M., & SCHNEIDER, R. (2007). Development of SRS.php, a Simple Object Access Protocol-based library for data acquisition from integrated biological databases. Genetics and Molecular Research, 6 (4), 1142-1150. ![]() |
SCHNEIDER, R., & Voss, H. (2006). Foreword. In In Silico Technologies in Drug Target Identification and Validation (pp. 1-2). St Lucie Pr. ![]() |
Erhardt, R. A. A., SCHNEIDER, R., & Blaschke, C. (2006). Status of text-mining techniques applied to biomedical text. Drug Discovery Today, 11 (7-8), 315-325. doi:10.1016/j.drudis.2006.02.011 ![]() |
Ofran, Y., Punta, M., SCHNEIDER, R., & Rost, B. (2005). Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery. Drug Discovery Today, 10 (21), 1475-1482. doi:10.1016/S1359-6446(05)03621-4 ![]() |
![]() ![]() | Kremer, A., SCHNEIDER, R., & Terstappen, G. C. (2005). A bioinformatics perspective on proteomics: Data storage, analysis, and integration. Bioscience Reports, 25 (1-2), 95-106. doi:10.1007/s10540-005-2850-4 ![]() |
Jackson, D., & SCHNEIDER, R. (2005). Ensemble and UniProt (Swiss-Prot). Genomics, Proteomics and Bioinformatics, 1-2. ![]() |
Ramakrishnan, S., Caruso, A., & SCHNEIDER, R. (2002). Improving Research Productivity at a Pharmaceutical Company. LION bioscience AG White Paper. |
Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Birney, E., Bucher, P., Codani, J. J., Corpet, F., Croning, M. D. R., Durbin, R., Etzold, T., Fleischmann, W., Gouzy, J., Hermjakob, H., Jonassen, I., Kahn, D., Kanapin, A., SCHNEIDER, R., Servant, F., & Zdobnov, E. (2000). INTERPRO. Bioinformatics. doi:10.1093/bioinformatics/16.12.1145 ![]() |
SCHNEIDER, R. (2000). Datenexplosion erschwert Bioforschung. Frankfurter Allgemeine Zeitung. |
SCHNEIDER, R. (2000). Bioinformatik: Verloren im Datendschungel ? Nachrichten aus der Chemie: Zeitschrift der Gesellschaft Deutscher Chemike, 48 (5), 622-625. doi:10.1002/nadc.20000480508 |
Dodge, C., SCHNEIDER, R., & Sander, C. (1998). The HSSP database of protein structure sequence alignments and family profiles. Nucleic Acids Research, 26 (1), 313-315. doi:10.1093/nar/26.1.313 ![]() |
SCHNEIDER, R. (1998). Functional Genome Analysis. Proceedings zur Tagung Hoechstleistungsrechnen in der Chemie. Tagung fuer industrielle Anwender. |
![]() ![]() | Rost, B., SCHNEIDER, R., & Sander, C. (1997). Protein fold recognition by prediction-based threading. Journal of Molecular Biology, 270 (3), 471-480. doi:10.1006/jmbi.1997.1101 ![]() |
![]() ![]() | Andrade, M. A., Daruvar, A., Casari, G., SCHNEIDER, R., Termier, M., & Sander, C. (1997). Characterization of new proteins found by analysis of short open reading frames from the full yeast genome. Journal of Yeast and Fungal Research, 13 (14), 1363-1374. ![]() |
![]() ![]() | Andrade, M., Casari, G., deDaruvar, A., Sander, C., SCHNEIDER, R., Tamames, J., Valencia, A., & Ouzounis, C. (1997). Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function. Computer Applications in the Biosciences [=CABIOS], 13 (4), 481-483. doi:10.1093/bioinformatics/13.4.481 ![]() |
Rost, B., SCHNEIDER, R., & Sander, C. (1997). Pedestrian guide to analyzing sequence databases. WWW-publication. |
SCHNEIDER, R., deDaruvar, A., & Sander, C. (1997). The HSSP database of protein structure-sequence alignments. Nucleic Acids Research, 25 (1), 226-230. doi:10.1093/nar/25.1.226 ![]() |
![]() ![]() | Casari, G., Daruvar, D., Sander, C., & SCHNEIDER, R. (1996). Bioinformatics and the discovery of gene function. Trends in Genetics, 128 (7), 244-245. doi:10.1016/0168-9525(96)30057-7 ![]() |
![]() ![]() | SCHNEIDER, R., & Schlenkrich, M. (1996). GeneCrunch and Europort, examples for Hierarchical Supercomputing at Silicon Graphics. WWW-publication. |
SCHNEIDER, R., & Sander, C. (1996). The HSSP database of protein structure sequence alignments. Nucleic Acids Research, 24 (1), 201-205. doi:10.1093/nar/24.1.201 ![]() |
SCHNEIDER, R., Casari, G., Daruvar, A., Bremer, P., Schlenkrich, M., Mercille, R., Vollhardt, H., & Sander, C. (1996). GeneCrunch: Experiences on the SGI POWER CHALLENGEarray with Bioinformatics applications. Supercomputer 96: Anwendungen, Architekturen, Trends. ![]() |
![]() ![]() | CASARI, G., ANDRADE, M. A., BORK, P., BOYLE, J., DARUVAR, A., OUZOUNIS, C., SCHNEIDER, R., TAMAMES, J., VALENCIA, A., & SANDER, C. (1995). CHALLENGING TIMES FOR BIOINFORMATICS. Nature, 376 (6542), 647-648. doi:10.1038/376647a0 ![]() |
SCHNEIDER, R., Casari, G., & Sander, C. (1995). Fast and sensitive search of information databases for biological relationships. Statustagung des BMBF, HPSC 95, Stand und Perspektiven des Parallelen Höchstleistungsrechnens und seiner Anwendungen. ![]() |
BORK, P., OUZOUNIS, C., CASARI, G., SCHNEIDER, R., SANDER, C., DOLAN, M., GILBERT, W., & GILLEVET, P. M. (1995). EXPLORING THE MYCOPLASMA-CAPRICOLUM GENOME - A MINIMAL CELL REVEALS ITS PHYSIOLOGY. Molecular Microbiology, 16 (5), 955-967. doi:10.1111/j.1365-2958.1995.tb02321.x ![]() |
Göbel, U., Sander, C., SCHNEIDER, R., & Valencia, A. (1994). Correlated mutations and residue contacts in proteins. Proteins, 18, 309-317. doi:10.1002/prot.340180402 ![]() |
SCHNEIDER, R. (1994). Sequenz und Sequenz-Struktur Vergleiche und deren Anwendung für die Struktur- und Funktionsvorhersage von Proteinen [Doctoral thesis, University of Heidelberg]. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/4446 |
![]() ![]() | ROST, B., SANDER, C., & SCHNEIDER, R. (1994). PHD - AN AUTOMATIC MAIL SERVER FOR PROTEIN SECONDARY STRUCTURE PREDICTION. Computer Applications in the Biosciences [=CABIOS], 10 (1), 53-60. doi:10.1093/bioinformatics/10.1.53 ![]() |
ROST, B., SANDER, C., & SCHNEIDER, R. (1994). REDEFINING THE GOALS OF PROTEIN SECONDARY STRUCTURE PREDICTION. Journal of Molecular Biology, 235 (1), 13-26. doi:10.1016/S0022-2836(05)80007-5 ![]() |
![]() ![]() | Scharf, M., SCHNEIDER, R., Casari, G., Bork, P., Valencia, A., Ouzounis, C., & Sander, C. (1994). GeneQuiz: a workbench for sequence analysis. Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, ISMB-94, 348-353. ![]() |
SANDER, C., & SCHNEIDER, R. (1994). THE HSSP DATABASE OF PROTEIN-STRUCTURE SEQUENCE ALIGNMENTS. Nucleic Acids Research, 22 (17), 3597-3599. ![]() |
Rost, B., Sander, C., & SCHNEIDER, R. (1994). Evolution and Neural Networks – Protein Secondary Structure Prediction Above 71% Accuracy. Proceedings of the 27th Hawaii International Conference on System Sciences, Vol. V, Biotechnology Computing. ![]() |
![]() ![]() | OUZOUNIS, C., SANDER, C., SCHARF, M., & SCHNEIDER, R. (1993). PREDICTION OF PROTEIN-STRUCTURE BY EVALUATION OF SEQUENCE-STRUCTURE FITNESS - ALIGNING SEQUENCES TO CONTACT PROFILES DERIVED FROM 3-DIMENSIONAL STRUCTURES. Journal of Molecular Biology, 232 (3), 805-825. doi:10.1006/jmbi.1993.1433 ![]() |
![]() ![]() | SANDER, C., & SCHNEIDER, R. (1993). THE HSSP DATA-BASE OF PROTEIN STRUCTURE-SEQUENCE ALIGNMENTS. Nucleic Acids Research, 21 (13), 3105-3109. doi:10.1093/nar/21.13.3105 ![]() |
![]() ![]() | ROST, B., SCHNEIDER, R., & SANDER, C. (1993). PROGRESS IN PROTEIN-STRUCTURE PREDICTION. Trends in Biochemical Sciences - Regular Edition, 18 (4), 120-123. doi:10.1016/0968-0004(93)90017-H ![]() |
Sander, C., & SCHNEIDER, R. (1993). From Sequence Similarity to Structural Homology of Proteins. Computation of Biomolecular Structures, Achievements, Problems and Perspectives, 15-28. ![]() |
Sander, C., & SCHNEIDER, R. (1993). MaxHom. The ZEUS Consortium Massively Parallel Computing, Technical Report PC2 / TR-006-94. |
![]() ![]() | BORK, P., OUZOUNIS, C., SANDER, C., SCHARF, M., SCHNEIDER, R., & SONNHAMMER, E. (1992). WHATS IN A GENOME. Nature, 358 (6384), 287-287. doi:10.1038/358287a0 ![]() |
![]() ![]() | BORK, P., OUZOUNIS, C., SANDER, C., SCHARF, M., SCHNEIDER, R., & SONNHAMMER, E. (1992). COMPREHENSIVE SEQUENCE-ANALYSIS OF THE 182 PREDICTED OPEN READING FRAMES OF YEAST CHROMOSOME-III. Protein Science: A Publication of the Protein Society, 1 (12), 1677-1690. doi:10.1002/pro.5560011216 ![]() |
![]() ![]() | HOBOHM, U., SCHARF, M., SCHNEIDER, R., & SANDER, C. (1992). SELECTION OF REPRESENTATIVE PROTEIN DATA SETS. Protein Science: A Publication of the Protein Society, 1 (3), 409-417. doi:10.1002/pro.5560010313 ![]() |
![]() ![]() | SANDER, C., & SCHNEIDER, R. (1991). DATABASE OF HOMOLOGY-DERIVED PROTEIN STRUCTURES AND THE STRUCTURAL MEANING OF SEQUENCE ALIGNMENT. Proteins, 9 (1), 56-68. doi:10.1002/prot.340090107 ![]() |