Profil

SCHNEIDER Reinhard

University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > Bioinformatics Core

Main Referenced Co-authors
SATAGOPAM, Venkata Pardhasaradhi  (41)
OSTASZEWSKI, Marek  (25)
Pavlopoulos, Georgios A. (17)
Sander, C. (15)
BALLING, Rudolf  (14)
Main Referenced Keywords
Humans (7); systems biology (6); Biochemistry (4); data integration (4); Software (4);
Main Referenced Unit & Research Centers
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group) (67)
Luxembourg Centre for Systems Biomedicine (LCSB): Biomedical Data Science (Glaab Group) (6)
ULHPC - University of Luxembourg: High Performance Computing (6)
Luxembourg Centre for Systems Biomedicine (LCSB): Experimental Neurobiology (Balling Group) (5)
Integrative Research Unit: Social and Individual Development (INSIDE) > PEARL Institute for Research on Socio-Economic Inequality (IRSEI) (1)
Main Referenced Disciplines
Biochemistry, biophysics & molecular biology (92)
Life sciences: Multidisciplinary, general & others (30)
Computer science (13)
Biotechnology (11)
Human health sciences: Multidisciplinary, general & others (8)

Publications (total 148)

The most downloaded
4393 downloads
Ballereau, S., Glaab, E., Kolodkin, A., Chaiboonchoe, A., Biryukov, M., Vlassis, N., Ahmed, H., Pellet, J., Baliga, N., Hood, L., Schneider, R., Balling, R., & Auffray, C. (2013). Functional Genomics, Proteomics, Metabolomics and Bioinformatics for Systems Biology. In A. Prokop & B. Csukás (Eds.), Systems Biology: Integrative Biology and Simulation Tools. Springer. doi:10.1007/978-94-007-6803-1_1 https://hdl.handle.net/10993/1247

The most cited

1532 citations (Scopus®)

SANDER, C., & Schneider, R. (1991). DATABASE OF HOMOLOGY-DERIVED PROTEIN STRUCTURES AND THE STRUCTURAL MEANING OF SEQUENCE ALIGNMENT. Proteins, 9 (1), 56-68. doi:10.1002/prot.340090107 https://hdl.handle.net/10993/17193

KLEE, M., AHO, V., MAY, P., Heintz-Buschart, A., LANDOULSI, Z., JONSDOTTIR, S., PAULY, C., PAVELKA, L., DELACOUR, L., KAYSEN, A., Krüger, R., WILMES, P., LEIST, A., Acharya, G., Aguayo, G., Alexandre, M., ALI, M., Ammerlann, W., ARENA, G., ... ZELIMKHANOV, G. (2024). Education as Risk Factor of Mild Cognitive Impairment: The Link to the Gut Microbiome. Journal of Prevention of Alzheimer's Disease. doi:10.14283/jpad.2024.19
Peer reviewed

ACENCIO, M. L., OSTASZEWSKI, M., MAZEIN, A., Rosenstiel, P., Aden, K., Mishra, N., Andersen, V., Sidiropoulos, P., Banos, A., Filia, A., Rahmouni, S., Finckh, A., GU, W., SCHNEIDER, R., & SATAGOPAM, V. (01 November 2023). The SYSCID map: a graphical and computational resource of molecular mechanisms across rheumatoid arthritis, systemic lupus erythematosus and inflammatory bowel disease. Frontiers in Immunology, 14. doi:10.3389/fimmu.2023.1257321
Peer Reviewed verified by ORBi

Gawron, P., Smula, E., SCHNEIDER, R., & OSTASZEWSKI, M. (February 2023). Exploration and comparison of molecular mechanisms across diseases using MINERVA Net. Protein Science: A Publication of the Protein Society, 32 (2), 4565. doi:10.1002/pro.4565
Peer Reviewed verified by ORBi

HEMEDAN, A., SCHNEIDER, R., & OSTASZEWSKI, M. (2023). Applications of Boolean modeling to study the dynamics of a complex disease and therapeutics responses. Frontiers in bioinformatics, 3, 1189723. doi:10.3389/fbinf.2023.1189723
Peer reviewed

Gawron, P., Hoksza, D., Piñero, J., Peña-Chilet, M., Esteban-Medina, M., Fernandez-Rueda, J. L., Colonna, V., Smula, E., HEIRENDT, L., Ancien, F., GROUES, V., SATAGOPAM, V., SCHNEIDER, R., Dopazo, J., Furlong, L. I., & OSTASZEWSKI, M. (2023). Visualization of automatically combined disease maps and pathway diagrams for rare diseases. Frontiers in Bioinformatics, 3, 1101505. doi:10.3389/fbinf.2023.1101505
Peer reviewed

MAZEIN, A., ACENCIO, M. L., BALAUR, I.-A., Rougny, A., WELTER, D., Niarakis, A., Ramirez Ardila, D., Dogrusoz, U., GAWRON, P., SATAGOPAM, V., GU, W., KREMER, A., SCHNEIDER, R., & OSTASZEWSKI, M. (2023). A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers in Bioinformatics, 3, 1197310. doi:10.3389/fbinf.2023.1197310
Peer reviewed

Vega Moreno, C. G., Gawron, P., Lebioda, J., Groues, V., Krüger, R., Schneider, R., & Satagopam, V. (20 September 2022). SMASCH: Facilitating multi-appointment scheduling in longitudinal clinical research studies and care programs [Poster presentation]. European Conference on Computational Biology, Sitges, Spain. doi:10.5281/zenodo.6832272

Vega Moreno, C. G., Gawron, P., Lebioda, J., Groues, V., Matyjaszczyk, P., Pauly, C., Smula, E., Krüger, R., Schneider, R., & Satagopam, V. (2022). Smart Scheduling (SMASCH): multi-appointment scheduling system for longitudinal clinical research studies. JAMIA Open, 5 (2), 038. doi:10.1093/jamiaopen/ooac038
Peer Reviewed verified by ORBi

Vega Moreno, C. G., Kratochvil, M., Satagopam, V., & Schneider, R. (2022). Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. In Bioinformatics and Biomedical Engineering (pp. 353--358). Cham, Unknown/unspecified: Springer International Publishing. doi:10.1007/978-3-031-07802-6_30
Peer reviewed

MAZEIN, A., Rougny, A., Karr, J. R., Saez-Rodriguez, J., OSTASZEWSKI, M., & SCHNEIDER, R. (02 September 2021). Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling. Briefings in Bioinformatics, 22 (5). doi:10.1093/bib/bbab103
Peer Reviewed verified by ORBi

MAZEIN, A., Ivanova, O., BALAUR, I.-A., OSTASZEWSKI, M., Berzhitskaya, V., Serebriyskaya, T., Ligon, T., Hasenauer, J., De Meulder, B., Overall, R. W., Roy, L., Knowles, R. G., Wheelock, C. E., Dahlen, S.-E., Chung, K. F., Adcock, I. M., Roberts, G., Djukanovic, R., Pellet, J., ... eTRIKS Consortium. (March 2021). AsthmaMap: An interactive knowledge repository for mechanisms of asthma. Journal of Allergy and Clinical Immunology, 147 (3), 853 - 856. doi:10.1016/j.jaci.2020.11.032
Peer Reviewed verified by ORBi

Bernhofer, M., Dallago, C., Karl, T., Satagopam, V., Heinzinger, M., Littmann, M., Olenyi, T., Qiu, J., Schütze, K., Yachdav, G., Ashkenazy, H., Ben-Tal, N., Bromberg, Y., Goldberg, T., Kajan, L., O’Donoghue, S., Sander, C., Schafferhans, A., Schlessinger, A., ... Rost, B. (2021). PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Research. doi:10.1093/nar/gkab354
Peer reviewed

Badimon, L., Robinson, E. L., Jusic, A., Carpusca, I., deWindt, L. J., Emanueli, C., Ferdinandy, P., Gu, W., Gyöngyösi, M., Hackl, M., Karaduzovic-Hadziabdic, K., Lustrek, M., Martelli, F., Nham, E., Potočnjak, I., Satagopam, V., Schneider, R., Thum, T., Devaux, Y., & CA17129, O. B. O. E. U.-C. C. A. (2021). Cardiovascular RNA markers and artificial intelligence may improve COVID-19 outcome: a position paper from the EU-CardioRNA COST Action CA17129. Cardiovascular Research. doi:10.1093/cvr/cvab094
Peer Reviewed verified by ORBi

Ostaszewski, M., Niarakis, A., Mazein, A., Kuperstein, I., Phair, R., Orta-Resendiz, A., Singh, V., Aghamiri, S. S., Acencio, M. L., Glaab, E., Ruepp, A., Fobo, G., Montrone, C., Brauner, B., Frishman, G., Monraz Gómez, L. C., Somers, J., Hoch, M., Kumar Gupta, S., ... Schneider, R. (2021). COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology, 17 (10), 10387. doi:10.15252/msb.202110387
Peer Reviewed verified by ORBi

Kratochvil, M.* , Heirendt, L.* , Wilken, S. E., Pusa, T., Arreckx, S., Noronha, A., van Aalst, M., Satagopam, V., Ebenhöh, O., Schneider, R., Trefois, C., & Gu, W. (2021). COBREXA.jl: constraint-based reconstruction and exascale analysis. Bioinformatics. doi:10.1093/bioinformatics/btab782
Peer reviewed
* These authors have contributed equally to this work.

Welter, D., Vega Moreno, C. G., Biryukov, M., Groues, V., Ghosh, S., Schneider, R., & Satagopam, V. (27 November 2020). Supporting findability of COVID-19 research with large-scale text mining of scientific publications [Poster presentation]. International FAIR Convergence Symposium. doi:10.5281/zenodo.4300199

Kratochvil, M.* , Hunewald, O.* , Heirendt, L., Verissimo, V., Vondrášek, J., Satagopam, V., Schneider, R., Trefois, C., & Ollert, M. (18 November 2020). GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets. GigaScience, 9 (11). doi:10.1093/gigascience/giaa127
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Vega Moreno, C. G., Groues, V., Ostaszewski, M., Satagopam, V., & Schneider, R. (04 September 2020). BioKC: a platform for quality controlled curation and annotation of systems biology models [Paper presentation]. European Conference on Computational Biology. doi:10.5281/zenodo.4033071

Ostaszewski, M., Mazein, A., Gillespie, M., Kuperstein, I., Niarakis, A., Hermjakob, H., Pico, A., Willinghagen, E., Evelo, C., Hasenauer, J., Schreiber, F., Dräger, A., Demir, E., Wolkenhauer, O., Furlong, L., Barillot, E., Dopazo, J., Orta-Resendiz, A., Messina, F., ... Schneider, R. (2020). COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific Data. doi:10.1038/s41597-020-0477-8
Peer reviewed

HEMEDAN, A., Abd Elaziz, M., Jiao, P., Alavi, A. H., Bahgat, M., OSTASZEWSKI, M., SCHNEIDER, R., Ghazy, H. A., Ewees, A. A., & Lu, S. (19 March 2020). Prediction of the Vaccine-derived Poliovirus Outbreak Incidence: A Hybrid Machine Learning Approach. Scientific Reports, 10 (1), 5058. doi:10.1038/s41598-020-61853-y
Peer Reviewed verified by ORBi

Vega Moreno, C. G., Groues, V., Ostaszewski, M., Schneider, R., & Satagopam, V. (2020). BioKC: a collaborative platform for systems biology model curation and annotation. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/44411. doi:10.1101/2020.10.01.322438

Weghuber, D., Forslund, A., Ahlström, H., Bergström, K., Cadamuro, J., Ciba, I., Dahlborn, M., Heu, V., Hofmann, J., Kristinsson, H., Kullberg, J., Ladinger, A., Lagler, F., Lidström, M., Manell, H., Meirik, M., Morwald, K., Roomp, Schneider, R., ... Bergsten, P. (2020). A six month randomized, double-blind, placebo-controlled trial of weekly exenatide in adolescents with obesity. Pediatric Obesity. doi:10.1111/ijpo.12624
Peer reviewed

Becker, R.* , Alper, P.* , Groues, V., Munoz, S., Jarosz, Y., Lebioda, J., Rege, K., Trefois, C., Satagopam, V., & Schneider, R. (04 December 2019). DAISY: A Data Information System for accountability under the General Data Protection Regulation. GigaScience, 8 (12). doi:10.1093/gigascience/giz140
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Berghuis, B., Stapleton, C., Sonsma, A., Hulst, J., de Haan, G., Lindhout, D., Demurtas, R., Balling, R., Schneider, R., EpiPGX Consortium, & Krause, R. (2019). A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine. Epilepsia Open. doi:10.1002/epi4.12297
Peer reviewed

Gu, W., Yildirimman, R., Van der Stuyft, E., Verbeeck, D., Herzinger, S., Satagopam, V., Barbosa-Silva, A., Schneider, R., Lange, B., Lehrach, H., Guo, Y., Henderson, D., Rowe, A., & on behalf of the IMI OncoTrack and the IMI eTRIKS consortia. (2019). Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. BMC Bioinformatics, 20 (1), 164. doi:10.1186/s12859-019-2748-y
Peer Reviewed verified by ORBi

Hoksza, D., Gawron, P., Ostaszewski, M., Hausenauer, J., & Schneider, R. (2019). Closing the gap between formats for storing layout information in systems biology. Briefings in Bioinformatics. doi:10.1093/bib/bbz067
Peer Reviewed verified by ORBi

Brosseron, F., & Schneider, R. (2019). Multicenter Alzheimer's and Parkinson's disease immune biomarker verification study. Alzheimer's and Dementia: the Journal of the Alzheimer's Association. doi:10.1016/j.jalz.2019.07.018
Peer reviewed

Abd Elaziz, M., Hemedan, A., Ostaszewski, M., Schneider, R., & Lu, S. (2019). Optimization ACE inhibition activity in hypertension based on random vector functional link and sine-cosine algorithm. Chemometrics and Intelligent Laboratory Systems. doi:10.1016/j.chemolab.2019.05.009
Peer Reviewed verified by ORBi

Hoksza, D., Gawron, P., Ostaszewski, M., Smula, E., & Schneider, R. (2019). MINERVA API and plugins: opening molecular network analysis and visualization to the community. Bioinformatics. doi:10.1093/bioinformatics/btz286
Peer reviewed

Noronha, A., Modamio Chamarro, J., Jarosz, Y., Guerard, E., Sompairac, N., Preciat Gonzalez, G. A., Danielsdottir, A. D., Krecke, M., Merten, D., Haraldsdottir, H., Heinken, A. K., Heirendt, L., Magnusdottir, S., Ravcheev, D., Sahoo, S., Gawron, P., Friscioni, L., Garcia Santa Cruz, B., Prendergast, M., ... Thiele, I. (2018). The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Research. doi:10.1093/nar/gky992
Peer Reviewed verified by ORBi

Herzinger, S., Groues, V., Gu, W., Satagopam, V., Banda, P., Trefois, C., & Schneider, R. (2018). Fractalis: A scalable open-source service for platform-independent interactive visual analysis of biomedical data. GigaScience. doi:10.1093/gigascience/giy109
Peer reviewed

Hoksza, D., Gawron, P., Ostaszewski, M., & Schneider, R. (2018). MolArt: a molecular structure annotation and visualization tool. Bioinformatics. doi:10.1093/bioinformatics/bty489
Peer reviewed

Ostaszewski, M., Kieffer, E., Danoy, G., Schneider, R., & Bouvry, P. (2018). Clustering approaches for visual knowledge exploration in molecular interaction networks. BMC Bioinformatics, 19 (1), 308. doi:10.1186/s12859-018-2314-z
Peer Reviewed verified by ORBi

Mazein, A., Ostaszewski, M., Kuperstein, I., Watterson, S., Le Novere, N., Lefaudeux, D., De Meulder, B., Pellet, J., Balaur, I., Saqi, M., Nogueira, M. M., He, F., Parton, A., Lemonnier, N., Gawron, P., Gebel, S., Hainaut, P., Ollert, M., Dogrusoz, U., ... Auffray, C. (2018). Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms. NPJ Systems Biology and Applications, 4, 21. doi:10.1038/s41540-018-0059-y
Peer Reviewed verified by ORBi

Ostaszewski, M., Gebel, S., Kuperstein, I., Mazein, A., Zinovyev, A., Dogrusoz, U., Hasenauer, J., Fleming, R. M., Le Novere, N., Gawron, P., Ligon, T., Niarakis, A., Nickerson, D., Weindl, D., Balling, R., Barillot, E., Auffray, C., & Schneider, R. (2018). Community-driven roadmap for integrated disease maps. Briefings in Bioinformatics. doi:10.1093/bib/bby024
Peer Reviewed verified by ORBi

Barbosa-Silva, A., Bratfalean, D., Gu, W., Satagopam, V., Houston, P., Becnel, L. B., Eifes, S., Richard, F., Tielmann, A., Herzinger, S., Rege, K., Balling, R., Peeters, P., & Schneider, R. (2018). Presenting and Sharing Clinical Data using the eTRIKS Standards Master Tree for tranSMART. Bioinformatics, 809. doi:10.1093/bioinformatics/bty809
Peer reviewed

Winterer, G., Androsova, G., Bender, O., Boraschi, D., Borchers, F., Dschietzig, T. B., Feinkohl, I., Fletcher, P., Gallinat, J., Hadzidiakos, D., Haynes, J. D., Heppner, F., Hetzer, S., Hendrikse, J., Ittermann, B., Kant, I. M. J., Kraft, A., Krannich, A., Krause, R., ... Zacharias, N. (2018). Personalized risk prediction of postoperative cognitive impairment - rationale for the EU-funded BioCog project. European Psychiatry, 50, 34-39. doi:10.1016/j.eurpsy.2017.10.004
Peer Reviewed verified by ORBi

Herzinger, S., Gu, W., Satagopam, V., Eifes, S., Rege, K., Barbosa Da Silva, A., & Schneider, R. (2017). SmartR: An open-source platform for interactive visual analytics for translational research data. Bioinformatics. doi:10.1093/bioinformatics/btx137
Peer reviewed

Staaf, J., Labmayr, V., Paulmichl, K., Manell, H., Schneider, R., & Roomp, K. (2017). Pancreatic Fat Is Associated With Metabolic Syndrome and Visceral Fat but Not Beta-Cell Function or Body Mass Index in Pediatric Obesity. Pancreas. doi:10.1097/MPA.0000000000000771
Peer Reviewed verified by ORBi

Da Silveira, M., Pruski, C., & Schneider, R. (Eds.). (2017). Data Integration in the Life Sciences. Springer Verlag.

Gawron, P., Ostaszewski, M., Satagopam, V., Gebel, S., Mazein, A., Kuzma, M., Zorzan, S., McGee, F., Otjacques, B., Balling, R., & Schneider, R. (2016). MINERVA—a platform for visualization and curation of molecular interaction networks. NPJ Systems Biology and Applications. doi:10.1038/npjsba.2016.20
Peer Reviewed verified by ORBi

Auffray, C., Balling, R., Barroso, I., Bencze, L., Benson, M., Bergeron, J., Bernal-Delgado, E., Blomberg, N., Bock, C., Conesa, A., Del Signore, S., Delogne, C., Devilee, P., Di Meglio, A., Eijkemans, M., Flicek, P., Graf, N., Grimm, V., Guchelaar, H.-J., ... Zanetti, G. (2016). Making sense of big data in health research: Towards an EU action plan. Genome Medicine, 8 (1), 71. doi:10.1186/s13073-016-0323-y
Peer Reviewed verified by ORBi

Satagopam, V., Gu, W., Eifes, S., Gawron, P., Ostaszewski, M., Gebel, S., Barbosa-Silva, A., Balling, R., & Schneider, R. (2016). Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data, 4 (2), 97-108. doi:10.1089/big.2015.0057
Peer reviewed

Noronha, A., Danielsdóttir, A. D., Jóhannsson, F., Jónsdóttir, S., Jarlsson, S., Gunnarsson, J. P., Brynjólfsson, S., Gawron, P., Schneider, R., Thiele, I., & Fleming, R. M. (2016). ReconMap: An interactive visualisation of human metabolism. Bioinformatics. doi:10.1093/bioinformatics/btw667
Peer reviewed

Hofmann-Apitius, M., Ball, G., Gebel, S., de Bono, Schneider, R., Page, M., Kodamulli, A., Younesi, E., Ebeling, C., Tegner, J., & Canard, L. (07 December 2015). Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders. International Journal of Molecular Sciences, 16 (12), 29179-29206. doi:10.3390/ijms161226148
Peer Reviewed verified by ORBi

Glaab, E., & Schneider, R. (15 June 2015). Shared alterations in the human brain transcriptome during adult aging and in Parkinson's disease [Poster presentation]. EMBO Symposium on Mechanisms of Neurodegeneration 2015, Heidelberg, Germany.

Glaab, E., & Schneider, R. (February 2015). Comparative pathway and network analysis of brain transcriptome changes during adult aging and in Parkinson's disease. Neurobiology of Disease, 74, 1-13. doi:10.1016/j.nbd.2014.11.002
Peer Reviewed verified by ORBi

Glaab, E., & Schneider, R. (2015). RepExplore: Addressing technical replicate variance in proteomics and metabolomics data analysis. Bioinformatics, 31 (13), 2235. doi:10.1093/bioinformatics/btv127
Peer reviewed

Nielsen, S. S., Danoy, G., Jurkowski, W., Jimenez Laredo, J. L., Schneider, R., Talbi, E.-G., & Bouvry, P. (2015). A Novel Multi-objectivisation Approach for Optimising the Protein Inverse Folding Problem. In Applications of Evolutionary Computation: 18th European Conference, EvoApplications 2015, Copenhagen, Denmark, April 8-10, 2015, Proceedings.
Peer reviewed

Jimenez-Sanchez, M., Lam, W., Hannus, M., Sonnichsen, B., Imarisio, S., Fleming, A., Tarditi, A., Menzies, F., Ed Dami, T., Xu, C., Gonzalez-Couto, E., Lazzeroni, G., Heitz, F., Diamanti, D., Massai, L., Satagopam, V., Marconi, G., Caramelli, C., Nencini, A., ... Rubinsztein, D. C. (2015). siRNA screen identifies QPCT as a druggable target for Huntington's disease. Nature Chemical Biology, 11 (5), 347–354. doi:10.1038/nchembio.1790
Peer Reviewed verified by ORBi

Androsova, G., Krause, R., Winterer, G., & Schneider, R. (2015). Biomarkers of postoperative delirium and cognitive dysfunction. Frontiers in Aging Neuroscience, 7 (112). doi:10.3389/fnagi.2015.00112
Peer Reviewed verified by ORBi

Krishna, A., Biryukov, M., Trefois, C., Antony, P., Hussong, R., Lin, J., Heinäniemi, M., Glusman, G., Köglsberger, S., Boyd, O., van den Berg, B. H. J., Linke, D., Huang, D., Wang, K., Hood, L., Tholey, A., Schneider, R., Galas, D. J., Balling, R., & May, P. (20 December 2014). Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson’s disease. BMC Genomics, 15 (1154). doi:10.1186/1471-2164-15-1154
Peer Reviewed verified by ORBi

Trefois, C., Jarosz, Y., Gu, W., Satagopam, V., Coronado, S., & Schneider, R. (December 2014). Reproducible Research Results R3 [Poster presentation]. 9th Benelux Bioinformatics Conference, Luxembourg, Luxembourg.

Papanikolaou, N., Pavlopoulos, G. A., Pafilis, E., Theodosiou, T., Schneider, R., Satagopam, V. P., Ouzounis, C., Eliopoulos, A., Promponas, V., & Iliopoulos, I. (2014). BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinformatics. doi:10.1093/bioinformatics/btu524
Peer reviewed

Yachdav, G., Kloppman, Kajan, Hecht, Goldberg, Hamp, Honigschmid, Schafferhans, Roos, M., Bernhofer, Richter, Ashkenazy, Punta, Schlessinger, Bromberg, Schneider, R., Vriend, Sander, Ben-Tal, & Rost. (05 May 2014). PredictProtein--an open resource for online prediction of protein structural and functional features. Nucleic Acids Research, 42 (8). doi:10.1093/nar/gku366
Peer reviewed

Glaab, E., & Schneider, R. (2014). Addressing Technical Replicate Variance in Omics Data Analysis [Poster presentation]. Benelux Bioinformatics Conference 2014.

Nielsen, S. S., Jurkowski, W., Danoy, G., Jimenez Laredo, J. L., Schneider, R., Talbi, E.-G., & Bouvry, P. (2014). Evolutionary Multi-Objective Optimisation with Quantile Constraint for the Protein Structure Similarity Problem [Paper presentation]. 5th International Conference on Metaheuristics and Nature Inspired Computing (META).

Nielsen, S. S., Jurkowski, W., Danoy, G., Jimenez Laredo, J. L., Schneider, R., Talbi, E.-G., & Bouvry, P. (2014). Evolutionary multi objective optimisation with diversity as objective for the protein structure similarity problem [Paper presentation]. Natural computing for protein structure prediction Workshop, 13th International Conference on Parallel Problem Solving From Nature (PPSN), Ljubljana, Slovenia.

Davey, N. E., Satagopam, V., Santiago-Mozos, S., Villacorta-Martin, C., Bharat, T. A. M., Schneider, R., & Briggs, J. A. G. (2014). The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data. PLoS Computational Biology. doi:10.1371/journal.pcbi.1003951
Peer Reviewed verified by ORBi

Fujita, K. A., Ostaszewski, M., Matsuoka, Y., Ghosh, S., Glaab, E., Trefois, C., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kodama, A., Satagopam, V., Eifes, S., del Sol Mesa, A., Schneider, R., Kitano, H., & Balling, R. (2014). Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map. Molecular Neurobiology. doi:10.1007/s12035-013-8489-4
Peer Reviewed verified by ORBi

Binder, J. X., Pletscher-Frankild, S., Tsafou, K., Stolte, C., O'Donoghue, S. I., Schneider, R., & Jensen, L. J. (2014). COMPARTMENTS: unification and visualization of protein subcellular localization evidence. Database: The Journal of Biological Databases and Curation, 2014, 012. doi:10.1093/database/bau012
Peer Reviewed verified by ORBi

Ostaszewski, M., Fujita, K., Matsuoka, Y., Ghosh, S., Glaab, E., Trefois, C., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kolodkin, A., Kodama, A., Satagopam, V., Biryukov, M., Eifes, S., del Sol Mesa, A., Schneider, R., ... Balling, R. (09 March 2013). The Parkinson's Disease Map: A Framework for Integration, Curation and Exploration of Disease-related Pathways [Poster presentation]. The 11th International Conference on Alzheimer's & Parkinson's Diseases, Florence, Italy.

Chowdhury, A., Satagopam, V., Manukyan, L., Artemenko, K. A., Fung, Y. M. E., Schneider, R., Bergquist, J., & Bergsten, P. (2013). Signaling in Insulin-Secreting MIN6 Pseudoislets and Monolayer Cells. Journal of Proteome Research. doi:10.1021/pr400864w
Peer Reviewed verified by ORBi

Bali, K. K., Selvaraj, D., Satagopam, V., Lu, J., Schneider, R., & Kuner, R. (2013). Genome-wide identification and functional analyses of microRNA signatures associated with cancer pain. EMBO Molecular Medicine, 5 (11), 1740-58. doi:10.1002/emmm.201302797
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Secrier, M., & Schneider, R. (2013). Visualizing time-related data in biology, a review. Briefings in Bioinformatics. doi:10.1093/bib/bbt021
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Jimenez, R., Albar, J., Bhak, J., Blatter, M.-C., Blicher, T., Brazas, M., Brooksbank, C., Budd, A., Rivas, J. D. L., Dreyer, J., van Driel, M. A., Dunn, M. J., Fernandes, P. L., van Gelder, C. W. G., Hermjakob, H., Ioannidis, V., Judge, D. P., Kahlem, P., Korpelainen, E., ... Corpas, M. (2013). IAnn: An event sharing platform for the life sciences. Bioinformatics, 1-2. doi:10.1093/bioinformatics/btt306
Peer reviewed

Pavlopoulos, G. A., Oulas, A., Iacucci, E., Sifrim, A., Moreau, Y., Schneider, R., Aerts, J., & Iliopoulos, I. (2013). Unraveling genomic variation from next generation sequencing data. BioData Mining, 6 (1), 13. doi:10.1186/1756-0381-6-13
Peer Reviewed verified by ORBi

Ballereau, S., Glaab, E., Kolodkin, A., Chaiboonchoe, A., Biryukov, M., Vlassis, N., Ahmed, H., Pellet, J., Baliga, N., Hood, L., Schneider, R., Balling, R., & Auffray, C. (2013). Functional Genomics, Proteomics, Metabolomics and Bioinformatics for Systems Biology. In A. Prokop & B. Csukás (Eds.), Systems Biology: Integrative Biology and Simulation Tools. Springer. doi:10.1007/978-94-007-6803-1_1
Peer reviewed

Secrier, M., & Schneider, R. (2013). PhenoTimer: Software for the Visual Mapping of Time-Resolved Phenotypic Landscapes. PLoS ONE, 8 (8), 72361. doi:10.1371/journal.pone.0072361
Peer Reviewed verified by ORBi

Simonetti, M., Hagenston, A., Vardeh, D., Freitag, E., Mauceri, D., Lu, J., Satagopam, V., Schneider, R., Costigan, M., Bading, H., & Kuner, R. (2013). Nuclear calcium signaling in spinal neurons drives a genomic program required for persistent inflammatory pain. Neuron, 77 (1), 43-57. doi:10.1016/j.neuron.2012.10.037
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Pafilis, E., Pavlopoulos, G., Satagopam, V., Papanikolaou, N., Horn, H., Arvanitidis, C., Jensen, L. J., Schneider, R., & Iliopoulos, I. (2013). OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction [Poster presentation]. 13th IEEE International Conference on Bioinformatics and Bioengineering (BIBE13), Chania, Greece. doi:10.1109/BIBE.2013.6701679

Bali, K. K., Venkataramani, V., Satagopam, V., Gupta, P., Schneider, R., & Kuner, R. (2013). Transcriptional mechanisms underlying sensitization of peripheral sensory neurons by Granulocyte-/Granulocyte-macrophage colony stimulating factors. Molecular Pain, 9 (1), 48. doi:10.1186/1744-8069-9-48
Peer Reviewed verified by ORBi

Georgatos, F., Ballereau, S., Pellet, J., Ghanem, M., Price, N., Hood, L., Guo, Y. K., Boutigny, D., Auffray, C., Balling, R., & Schneider, R. (2013). Computational infrastructures for data and knowledge management in systems biology. In A. Prokop & B. Csukás (Eds.), Systems Biology: Integrative Biology and Simulation Tools. Springer. doi:10.1007/978-94-007-6803-1_13
Peer reviewed

Trefois, C., Fujita, A. K., Ostaszewski, M., Matsuoka, Y., Ghosh, S., Glaab, E., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kodama, A., Satagopam, V., Eifes, S., del Sol Mesa, A., Schneider, R., Kitano, H., & Balling, R. (August 2012). Constructing a comprehensive map of Parkinson’s disease to elucidate underlying mechanisms of its multifaceted molecular pathology [Poster presentation]. The 13th International Conference on Systems Biology.

Iacucci, E., Tranchevent, L. C., Popovic, D., Pavlopoulos, G. A., De Moor, B., Schneider, R., & Moreau, Y. (2012). ReLiance: a machine learning and literature-based prioritization of receptor—ligand pairings. Bioinformatics, 28 (18), 569-i574. doi:10.1093/bioinformatics/bts391
Peer reviewed

Rost, B., Gaasterland, T., Lengauer, T., Linial, M., Markel, S., McKay, B. J. M., Schneider, R., Horton, P., & Kelso, J. (2012). Paving the future: finding suitable ISMB venues. Bioinformatics, 28 (19), 2556-9. doi:10.1093/bioinformatics/bts420
Peer reviewed

Secrier, M., Pavlopoulos, G. A., Aerts, J., & Schneider, R. (2012). Arena3D: visualizing time-driven phenotypic differences in biological systems. BMC Bioinformatics, (13), 45. doi:10.1186/1471-2105-13-45
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Corpas, M., Fatumo, S., & Schneider, R. (2012). How Not to Be a Bioinformatician. Source Code for Biology and Medicine. doi:10.1186/1751-0473-7-3
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Glaab, E., Baudot, A., Krasnogor, N., Schneider, R., & Valencia, A. (2012). EnrichNet: network-based gene set enrichment analysis. Bioinformatics, 28 (18), 451-i457. doi:10.1093/bioinformatics/bts389
Peer reviewed

Azuaje, F. J., Heymann, M., Ternes, A. M., Wienecke-Baldacchino, A., Struck, D., Moes, D., & Schneider, R. (2012). Bioinformatics as a driver, not a passenger, of translational biomedical research: Perspectives from the 6th Benelux bioinformatics conference. Journal of Clinical Bioinformatics, 2 (7). doi:10.1186/2043-9113-2-7
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Soldatos, T. G., O’Donoghue, S. I., Satagopam, V. P., Barbosa-Silva, A., Pavlopoulos, G. A., Wanderley-Nogueira, A. C., Soares-Cavalcanti, N. M., & Schneider, R. (2012). Caipirini: using gene sets to rank literature. BioData Mining, 5 (1). doi:10.1186/1756-0381-5-1
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Glaab, E., & Schneider, R. (2012). PathVar: analysis of gene and protein expression variance in cellular pathways using microarray data. Bioinformatics, 446-447. doi:10.1093/bioinformatics/btr656
Peer reviewed

Michalopoulos, I., Pavlopoulos, G., Malatras, A., Karelas, A., Kostadima, M.-A., Schneider, R., & Kossida, S. (2012). Human gene correlation analysis (HGCA): A tool for the identification of transcriptionally co-expressed genes. BMC Research Notes, 5 (265), 1-11. doi:10.1186/1756-0500-5-265
Peer Reviewed verified by ORBi

Pavlopoulos, G. A., Secrier, M., Moschopoulos, C. N., Soldatos, T. G., Kossida, S., Aerts, J., Schneider, R., & Bagos, P. G. (2011). Using graph theory to analyze biological networks. BioData Mining, 4 (10), 1-27. doi:10.1186/1756-0381-4-10
Peer Reviewed verified by ORBi

Moschopoulos, C. N., Pavlopoulos, G. A., Iacucci, E., Aerts, J., Likothanassis, S., Schneider, R., & Kossida, S. (2011). Which clustering algorithm is better for predicting protein complexes? BMC Research Notes, (4), 549. doi:10.1186/1756-0500-4-549
Peer Reviewed verified by ORBi

Pavlopoulos, G. A., Hooper, S. D., Sifrim, A., Schneider, R., & Aerts, J. (2011). Medusa: A tool for exploring and clustering biological networks. BMC Research Notes, 4 (1), 384. doi:10.1186/1756-0500-4-384
Peer Reviewed verified by ORBi

Joosten, R., Beek, T., Krieger, E., Hekkelman, M., Hooft, R., Schneider, R., Sander, S., & Vriend, G. (2010). A series of PDB related databases for everyday needs. Nucleic Acids Research, 39 (1), 411-419. doi:10.1093/nar/gkq1105
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Boerner, K., Hermle, J., Sommer, C., Brown, N. P., Knapp, B., Glass, B., Kunkel, J., Torralba, G., Reymann, J., Beil, N., Beneke, J., Pepperkok, R., Schneider, R., Ludwig, T., Hausmann, M., Hamprecht, F., Erfle, H., Kaderali, L., Kraeusslich, H.-G., & Lehmann, M. J. (2010). From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication. Biotechnology Journal, 5 (1), 39-49. doi:10.1002/biot.200900226
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Gehlenborg, N., O'Donoghue, S. I., Baliga, N. S., Goesmann, A., Hibbs, M. A., Kitano, H., Kohlbacher, O., Neuweger, H., Schneider, R., Tenenbaum, D., & Gavin, A.-C. (2010). Visualization of omics data for systems biology. Nature Methods, 7 (3), 56-68. doi:10.1038/NMETH.1436
Peer Reviewed verified by ORBi

Lister, A. L., Datta, R. S., Hofmann, O., Krause, R., Kuhn, M., Roth, B., & Schneider, R. (2010). Live Coverage of Scientific Conferences Using Web Technologies. PLoS Computational Biology, 6 (1), 1-2. doi:10.1371/journal.pcbi.1000563
Peer Reviewed verified by ORBi

Lister, A. L., Datta, R. S., Hofmann, O., Krause, R., Kuhn, M., Roth, B., & Schneider, R. (2010). Live Coverage of Intelligent Systems for Molecular Biology. PLoS Computational Biology, 6. doi:10.1371/journal.pcbi.1000640
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Satagopam, V., Theodoropoulou, M. C., Stampolakis, C. K., Pavlopoulos, G. A., Papandreou, N. C., Bagos, P. G., Schneider, R., & Hamodrakas, S. J. (2010). GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database: The Journal of Biological Databases and Curation, 2010, 019. doi:10.1093/database/baq019
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Marji, J., O'Donoghue, S. I., McClintock, D., Satagopam, V., Schneider, R., Ratner, D., Worman, H. J., Gordon, L. B., & Djabali, K. (2010). Defective Lamin A-Rb Signaling in Hutchinson-Gilford Progeria Syndrome and Reversal by Farnesyltransferase Inhibition. PLoS ONE, 5 (6). doi:10.1371/journal.pone.0011132
Peer Reviewed verified by ORBi

O'Donoghue, S. I., Horn, H., Pafilis, E., Haag, S., Kuhn, M., Satagopam, V., Schneider, R., & Jensen, L. J. (2010). Reflect: A practical approach to web semantics. Journal of Web Semantics, 8 (2-3), 182-189. doi:10.1016/j.websem.2010.03.003
Peer reviewed

Neumann, B., Walter, T., Heriche, J.-K., Bulkescher, J., Erfle, H., Conrad, C., Rogers, P., Poser, I., Held, M., Liebel, U., Cetin, C., Sieckmann, F., Pau, G., Kabbe, R., Wuensche, A., Satagopam, V., Schmitz, M. H. A., Chapuis, C., Gerlich, D. W., ... Ellenberg, J. (2010). Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature, 464 (7289), 721-727. doi:10.1038/nature08869
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Satagopam, V., Theodoropoulou, M. C., Christos, S. K., Pavlopoulos, G. A., Papandreou, N. C., Bagos, P. G., Schneider, R., & Hamodrakas, S. J. (2010). GPCRs, G-proteins, Effectors and their interactions: Human-gpDB, a database employing advanced visualization tools and data integration techniques. Database: The Journal of Biological Databases and Curation.
Peer Reviewed verified by ORBi

Barbosa Da Silva, A., Soldatos, T. G., Magalhaes, I. L. F., Pavlopoulos, G. A., Fontaine, J.-F., Andrade-Navarro, M. A., Schneider, R., & Ortega, J. M. (2010). LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships. BMC Bioinformatics, 11, 70. doi:10.1186/1471-2105-11-70
Peer Reviewed verified by ORBi

Pavlopoulos, G. A., Soldatos, T. G., Barbosa Da Silva, A., & Schneider, R. (2010). A reference guide for tree analysis and visualization. BioData Mining, 3 (1), 1. doi:10.1186/1756-0381-3-1
Peer Reviewed verified by ORBi

Soldatos, T. G., O'Donoghue, S. I., Satagopam, V., Jensen, L. J., Brown, N. P., Barbosa Da Silva, A., & Schneider, R. (2010). Martini: using literature keywords to compare gene sets. Nucleic Acids Research, 38 (1), 26-38. doi:10.1093/nar/gkp876
Peer Reviewed verified by ORBi

Moschopoulos, C. N., Pavlopoulos, G. A., Schneider, R., Likothanassis, S. D., & Kossida, S. (2009). GIBA: a clustering tool for detecting protein complexes. BMC Bioinformatics, 10, 1-2. doi:10.1186/1471-2105-10-S6-S11
Peer Reviewed verified by ORBi

Pavlopoulos, G. A., Moschopoulos, C. N., Hooper, S. D., Schneider, R., & Kossida, S. (2009). jClust: a clustering and visualization toolbox. Bioinformatics, 25 (15), 1994-1996. doi:10.1093/bioinformatics/btp330
Peer reviewed

Pafilis, E., O'Donoghue, S. I., Jensen, L. J., Horn, H., Kuhn, M., Brown, N. P., & Schneider, R. (2009). Reflect: augmented browsing for the life scientist. Nature Biotechnology, 27 (6), 508-510. doi:10.1038/nbt0609-508
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Pavlopoulos, G. A., Pafilis, E., Kuhn, M., Hooper, S. D., & Schneider, R. (2009). OnTheFly: a tool for automated document-based text annotation, data linking and network generation. Bioinformatics, 25 (7), 977-978. doi:10.1093/bioinformatics/btp081
Peer reviewed

Bromberg, Y., Yachdav, G., Ofran, Y., Schneider, R., & Rost, B. (2009). New in protein structure and function annotation: Hotspots, single nucleotide polymorphisms and the 'Deep Web'. Current Opinion in Drug Discovery and Development, 12 (3), 408-419.
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Pavlopoulos, G. A., Wegener, A. L., & Schneider, R. (2008). A survey of visualization tools for biological network analysis. BioData Mining. doi:10.1186/1756-0381-1-12
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Guenther, S., Kuhn, M., Dunkel, M., Campillos, M., Senger, C., Petsalaki, E., Ahmed, J., Urdiales, E. G., Gewiess, A., Jensen, L. J., Schneider, R., Skoblo, R., Russell, R. B., Bourne, P. E., Bork, P., & Preissner, R. (2008). SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Research, 36 (SI), 919-922. doi:10.1093/nar/gkm862
Peer Reviewed verified by ORBi

Pavlopoulos, G. A., O'Donoghue, S. I., Satagopam, V., Soldatos, T. G., Pafilis, E., & Schneider, R. (2008). Arena3D: visualization of biological networks in 3D. BMC Systems Biology, 2, 1-2. doi:10.1186/1752-0509-2-104
Peer Reviewed verified by ORBi

Barbosa Da Silva, A., Satagopam, V., Schneider, R., & Ortega, J. M. (2008). Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence. BMC Bioinformatics, 9, 141. doi:10.1186/1471-2105-9-141
Peer Reviewed verified by ORBi

Barbosa Da Silva, A., Pafilis, E., Ortega, J. M., & Schneider, R. (2007). Development of SRS.php, a Simple Object Access Protocol-based library for data acquisition from integrated biological databases. Genetics and Molecular Research, 6 (4), 1142-1150.
Peer Reviewed verified by ORBi

Erhardt, R. A. A., Schneider, R., & Blaschke, C. (2006). Status of text-mining techniques applied to biomedical text. Drug Discovery Today, 11 (7-8), 315-325. doi:10.1016/j.drudis.2006.02.011
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Schneider, R., & Voss, H. (2006). Foreword. In In Silico Technologies in Drug Target Identification and Validation (pp. 1-2). St Lucie Pr.
Peer reviewed

Ofran, Y., Punta, M., Schneider, R., & Rost, B. (2005). Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery. Drug Discovery Today, 10 (21), 1475-1482. doi:10.1016/S1359-6446(05)03621-4
Peer Reviewed verified by ORBi

Kremer, A., Schneider, R., & Terstappen, G. C. (2005). A bioinformatics perspective on proteomics: Data storage, analysis, and integration. Bioscience Reports, 25 (1-2), 95-106. doi:10.1007/s10540-005-2850-4
Peer reviewed

Jackson, D., & Schneider, R. (2005). Ensemble and UniProt (Swiss-Prot). Genomics, Proteomics and Bioinformatics, 1-2.
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Ramakrishnan, S., Caruso, A., & Schneider, R. (2002). Improving Research Productivity at a Pharmaceutical Company. LION bioscience AG White Paper.

Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Birney, E., Bucher, P., Codani, J. J., Corpet, F., Croning, M. D. R., Durbin, R., Etzold, T., Fleischmann, W., Gouzy, J., Hermjakob, H., Jonassen, I., Kahn, D., Kanapin, A., Schneider, R., Servant, F., & Zdobnov, E. (2000). INTERPRO. Bioinformatics. doi:10.1093/bioinformatics/16.12.1145
Peer reviewed

Schneider, R. (2000). Datenexplosion erschwert Bioforschung. Frankfurter Allgemeine Zeitung.

Schneider, R. (2000). Bioinformatik: Verloren im Datendschungel ? Nachrichten aus der Chemie: Zeitschrift der Gesellschaft Deutscher Chemike, 48 (5), 622-625. doi:10.1002/nadc.20000480508

Dodge, C., Schneider, R., & Sander, C. (1998). The HSSP database of protein structure sequence alignments and family profiles. Nucleic Acids Research, 26 (1), 313-315. doi:10.1093/nar/26.1.313
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Schneider, R. (1998). Functional Genome Analysis. Proceedings zur Tagung Hoechstleistungsrechnen in der Chemie. Tagung fuer industrielle Anwender.

Rost, B., Schneider, R., & Sander, C. (1997). Pedestrian guide to analyzing sequence databases. WWW-publication.

Rost, B., Schneider, R., & Sander, C. (1997). Protein fold recognition by prediction-based threading. Journal of Molecular Biology, 270 (3), 471-480. doi:10.1006/jmbi.1997.1101
Peer Reviewed verified by ORBi

Andrade, M. A., Daruvar, A., Casari, G., Schneider, R., Termier, M., & Sander, C. (1997). Characterization of new proteins found by analysis of short open reading frames from the full yeast genome. Journal of Yeast and Fungal Research, 13 (14), 1363-1374.
Peer Reviewed verified by ORBi

Andrade, M., Casari, G., deDaruvar, A., Sander, C., Schneider, R., Tamames, J., Valencia, A., & Ouzounis, C. (1997). Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function. Computer Applications in the Biosciences [=CABIOS], 13 (4), 481-483. doi:10.1093/bioinformatics/13.4.481
Peer reviewed

Schneider, R., deDaruvar, A., & Sander, C. (1997). The HSSP database of protein structure-sequence alignments. Nucleic Acids Research, 25 (1), 226-230. doi:10.1093/nar/25.1.226
Peer Reviewed verified by ORBi

Schneider, R., & Schlenkrich, M. (1996). GeneCrunch and Europort, examples for Hierarchical Supercomputing at Silicon Graphics. WWW-publication.

Casari, G., Daruvar, D., Sander, C., & Schneider, R. (1996). Bioinformatics and the discovery of gene function. Trends in Genetics, 128 (7), 244-245. doi:10.1016/0168-9525(96)30057-7
Peer reviewed

Schneider, R., & Sander, C. (1996). The HSSP database of protein structure sequence alignments. Nucleic Acids Research, 24 (1), 201-205. doi:10.1093/nar/24.1.201
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Schneider, R., Casari, G., Daruvar, A., Bremer, P., Schlenkrich, M., Mercille, R., Vollhardt, H., & Sander, C. (1996). GeneCrunch: Experiences on the SGI POWER CHALLENGEarray with Bioinformatics applications. Supercomputer 96: Anwendungen, Architekturen, Trends.
Peer reviewed

CASARI, G., ANDRADE, M. A., BORK, P., BOYLE, J., DARUVAR, A., OUZOUNIS, C., Schneider, R., TAMAMES, J., VALENCIA, A., & SANDER, C. (1995). CHALLENGING TIMES FOR BIOINFORMATICS. Nature, 376 (6542), 647-648. doi:10.1038/376647a0
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BORK, P., OUZOUNIS, C., CASARI, G., Schneider, R., SANDER, C., DOLAN, M., GILBERT, W., & GILLEVET, P. M. (1995). EXPLORING THE MYCOPLASMA-CAPRICOLUM GENOME - A MINIMAL CELL REVEALS ITS PHYSIOLOGY. Molecular Microbiology, 16 (5), 955-967. doi:10.1111/j.1365-2958.1995.tb02321.x
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Schneider, R., Casari, G., & Sander, C. (1995). Fast and sensitive search of information databases for biological relationships. Statustagung des BMBF, HPSC 95, Stand und Perspektiven des Parallelen Höchstleistungsrechnens und seiner Anwendungen.
Peer reviewed

ROST, B., SANDER, C., & Schneider, R. (1994). REDEFINING THE GOALS OF PROTEIN SECONDARY STRUCTURE PREDICTION. Journal of Molecular Biology, 235 (1), 13-26. doi:10.1016/S0022-2836(05)80007-5
Peer Reviewed verified by ORBi

Schneider, R. (1994). Sequenz und Sequenz-Struktur Vergleiche und deren Anwendung für die Struktur- und Funktionsvorhersage von Proteinen [Doctoral thesis, University of Heidelberg]. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/4446

ROST, B., SANDER, C., & Schneider, R. (1994). PHD - AN AUTOMATIC MAIL SERVER FOR PROTEIN SECONDARY STRUCTURE PREDICTION. Computer Applications in the Biosciences [=CABIOS], 10 (1), 53-60. doi:10.1093/bioinformatics/10.1.53
Peer reviewed

Göbel, U., Sander, C., Schneider, R., & Valencia, A. (1994). Correlated mutations and residue contacts in proteins. Proteins, 18, 309-317. doi:10.1002/prot.340180402
Peer Reviewed verified by ORBi

Scharf, M., Schneider, R., Casari, G., Bork, P., Valencia, A., Ouzounis, C., & Sander, C. (1994). GeneQuiz: a workbench for sequence analysis. Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, ISMB-94, 348-353.
Peer reviewed

SANDER, C., & Schneider, R. (1994). THE HSSP DATABASE OF PROTEIN-STRUCTURE SEQUENCE ALIGNMENTS. Nucleic Acids Research, 22 (17), 3597-3599.
Peer Reviewed verified by ORBi

Rost, B., Sander, C., & Schneider, R. (1994). Evolution and Neural Networks – Protein Secondary Structure Prediction Above 71% Accuracy. Proceedings of the 27th Hawaii International Conference on System Sciences, Vol. V, Biotechnology Computing.
Peer reviewed

SANDER, C., & Schneider, R. (1993). THE HSSP DATA-BASE OF PROTEIN STRUCTURE-SEQUENCE ALIGNMENTS. Nucleic Acids Research, 21 (13), 3105-3109. doi:10.1093/nar/21.13.3105
Peer Reviewed verified by ORBi

ROST, B., Schneider, R., & SANDER, C. (1993). PROGRESS IN PROTEIN-STRUCTURE PREDICTION. Trends in Biochemical Sciences - Regular Edition, 18 (4), 120-123. doi:10.1016/0968-0004(93)90017-H
Peer reviewed

OUZOUNIS, C., SANDER, C., SCHARF, M., & Schneider, R. (1993). PREDICTION OF PROTEIN-STRUCTURE BY EVALUATION OF SEQUENCE-STRUCTURE FITNESS - ALIGNING SEQUENCES TO CONTACT PROFILES DERIVED FROM 3-DIMENSIONAL STRUCTURES. Journal of Molecular Biology, 232 (3), 805-825. doi:10.1006/jmbi.1993.1433
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Sander, C., & Schneider, R. (1993). From Sequence Similarity to Structural Homology of Proteins. Computation of Biomolecular Structures, Achievements, Problems and Perspectives, 15-28.
Peer reviewed

Sander, C., & Schneider, R. (1993). MaxHom. The ZEUS Consortium Massively Parallel Computing, Technical Report PC2 / TR-006-94.

BORK, P., OUZOUNIS, C., SANDER, C., SCHARF, M., Schneider, R., & SONNHAMMER, E. (1992). WHATS IN A GENOME. Nature, 358 (6384), 287-287. doi:10.1038/358287a0
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BORK, P., OUZOUNIS, C., SANDER, C., SCHARF, M., Schneider, R., & SONNHAMMER, E. (1992). COMPREHENSIVE SEQUENCE-ANALYSIS OF THE 182 PREDICTED OPEN READING FRAMES OF YEAST CHROMOSOME-III. Protein Science: A Publication of the Protein Society, 1 (12), 1677-1690. doi:10.1002/pro.5560011216
Peer Reviewed verified by ORBi

HOBOHM, U., SCHARF, M., Schneider, R., & SANDER, C. (1992). SELECTION OF REPRESENTATIVE PROTEIN DATA SETS. Protein Science: A Publication of the Protein Society, 1 (3), 409-417. doi:10.1002/pro.5560010313
Peer Reviewed verified by ORBi

SANDER, C., & Schneider, R. (1991). DATABASE OF HOMOLOGY-DERIVED PROTEIN STRUCTURES AND THE STRUCTURAL MEANING OF SEQUENCE ALIGNMENT. Proteins, 9 (1), 56-68. doi:10.1002/prot.340090107
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