  | KLEE, M., AHO, V., MAY, P., Heintz-Buschart, A., LANDOULSI, Z., JONSDOTTIR, S., PAULY, C., PAVELKA, L., DELACOUR, L., KAYSEN, A., Krüger, R., WILMES, P., LEIST, A., Acharya, G., Aguayo, G., Alexandre, M., ALI, M., Ammerlann, W., ARENA, G., ... ZELIMKHANOV, G. (2024). Education as Risk Factor of Mild Cognitive Impairment: The Link to the Gut Microbiome. Journal of Prevention of Alzheimer's Disease. doi:10.14283/jpad.2024.19  Peer reviewed |
 | ACENCIO, M. L., OSTASZEWSKI, M., MAZEIN, A., Rosenstiel, P., Aden, K., Mishra, N., Andersen, V., Sidiropoulos, P., Banos, A., Filia, A., Rahmouni, S., Finckh, A., GU, W., SCHNEIDER, R., & SATAGOPAM, V. (01 November 2023). The SYSCID map: a graphical and computational resource of molecular mechanisms across rheumatoid arthritis, systemic lupus erythematosus and inflammatory bowel disease. Frontiers in Immunology, 14. doi:10.3389/fimmu.2023.1257321 Peer Reviewed verified by ORBi |
 | Gawron, P., Smula, E., SCHNEIDER, R., & OSTASZEWSKI, M. (February 2023). Exploration and comparison of molecular mechanisms across diseases using MINERVA Net. Protein Science: A Publication of the Protein Society, 32 (2), 4565. doi:10.1002/pro.4565 Peer Reviewed verified by ORBi |
 | Gawron, P., Hoksza, D., Piñero, J., Peña-Chilet, M., Esteban-Medina, M., Fernandez-Rueda, J. L., Colonna, V., Smula, E., HEIRENDT, L., Ancien, F., GROUES, V., SATAGOPAM, V., SCHNEIDER, R., Dopazo, J., Furlong, L. I., & OSTASZEWSKI, M. (2023). Visualization of automatically combined disease maps and pathway diagrams for rare diseases. Frontiers in Bioinformatics, 3, 1101505. doi:10.3389/fbinf.2023.1101505 Peer Reviewed verified by ORBi |
 | MAZEIN, A., ACENCIO, M. L., BALAUR, I.-A., Rougny, A., WELTER, D., Niarakis, A., Ramirez Ardila, D., Dogrusoz, U., GAWRON, P., SATAGOPAM, V., GU, W., KREMER, A., SCHNEIDER, R., & OSTASZEWSKI, M. (2023). A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers in Bioinformatics, 3, 1197310. doi:10.3389/fbinf.2023.1197310 Peer Reviewed verified by ORBi |
 | HEMEDAN, A., SCHNEIDER, R., & OSTASZEWSKI, M. (2023). Applications of Boolean modeling to study the dynamics of a complex disease and therapeutics responses. Frontiers in bioinformatics, 3, 1189723. doi:10.3389/fbinf.2023.1189723 Peer reviewed |
 | VEGA MORENO, C. G., GAWRON, P., Lebioda, J., GROUES, V., KRÜGER, R., SCHNEIDER, R., & SATAGOPAM, V. (20 September 2022). SMASCH: Facilitating multi-appointment scheduling in longitudinal clinical research studies and care programs [Poster presentation]. European Conference on Computational Biology, Sitges, Spain. doi:10.5281/zenodo.6832272 |
  | VEGA MORENO, C. G., GAWRON, P., LEBIODA, J., GROUES, V., Matyjaszczyk, P., PAULY, C., SMULA, E., KRÜGER, R., SCHNEIDER, R., & SATAGOPAM, V. (2022). Smart Scheduling (SMASCH): multi-appointment scheduling system for longitudinal clinical research studies. JAMIA Open, 5 (2), 038. doi:10.1093/jamiaopen/ooac038 Peer Reviewed verified by ORBi |
 | VEGA MORENO, C. G., KRATOCHVIL, M., SATAGOPAM, V., & SCHNEIDER, R. (2022). Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. In Bioinformatics and Biomedical Engineering (pp. 353--358). Cham, Unknown/unspecified: Springer International Publishing. doi:10.1007/978-3-031-07802-6_30 Peer reviewed |
 | MAZEIN, A., Rougny, A., Karr, J. R., Saez-Rodriguez, J., OSTASZEWSKI, M., & SCHNEIDER, R. (02 September 2021). Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling. Briefings in Bioinformatics, 22 (5). doi:10.1093/bib/bbab103 Peer Reviewed verified by ORBi |
 | MAZEIN, A., Ivanova, O., BALAUR, I.-A., OSTASZEWSKI, M., Berzhitskaya, V., Serebriyskaya, T., Ligon, T., Hasenauer, J., De Meulder, B., Overall, R. W., Roy, L., Knowles, R. G., Wheelock, C. E., Dahlen, S.-E., Chung, K. F., Adcock, I. M., Roberts, G., Djukanovic, R., Pellet, J., ... eTRIKS Consortium. (March 2021). AsthmaMap: An interactive knowledge repository for mechanisms of asthma. Journal of Allergy and Clinical Immunology, 147 (3), 853 - 856. doi:10.1016/j.jaci.2020.11.032 Peer Reviewed verified by ORBi |
 | Bernhofer, M., Dallago, C., Karl, T., SATAGOPAM, V., Heinzinger, M., Littmann, M., Olenyi, T., Qiu, J., Schütze, K., Yachdav, G., Ashkenazy, H., Ben-Tal, N., Bromberg, Y., Goldberg, T., Kajan, L., O’Donoghue, S., Sander, C., Schafferhans, A., Schlessinger, A., ... Rost, B. (2021). PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Research. doi:10.1093/nar/gkab354 Peer reviewed |
 | Badimon, L., Robinson, E. L., Jusic, A., Carpusca, I., deWindt, L. J., Emanueli, C., Ferdinandy, P., GU, W., Gyöngyösi, M., Hackl, M., Karaduzovic-Hadziabdic, K., Lustrek, M., Martelli, F., Nham, E., Potočnjak, I., SATAGOPAM, V., SCHNEIDER, R., Thum, T., DEVAUX, Y., & CA17129, O. B. O. E. U.-C. C. A. (2021). Cardiovascular RNA markers and artificial intelligence may improve COVID-19 outcome: a position paper from the EU-CardioRNA COST Action CA17129. Cardiovascular Research. doi:10.1093/cvr/cvab094 Peer Reviewed verified by ORBi |
 | KRATOCHVIL, M.* , HEIRENDT, L.* , Wilken, S. E., PUSA, T., Arreckx, S., NORONHA, A., van Aalst, M., SATAGOPAM, V., Ebenhöh, O., SCHNEIDER, R., TREFOIS, C., & GU, W. (2021). COBREXA.jl: constraint-based reconstruction and exascale analysis. Bioinformatics. doi:10.1093/bioinformatics/btab782 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | OSTASZEWSKI, M., Niarakis, A., MAZEIN, A., Kuperstein, I., Phair, R., Orta-Resendiz, A., Singh, V., Aghamiri, S. S., ACENCIO, M. L., GLAAB, E., Ruepp, A., Fobo, G., Montrone, C., Brauner, B., Frishman, G., Monraz Gómez, L. C., Somers, J., Hoch, M., Kumar Gupta, S., ... SCHNEIDER, R. (2021). COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology, 17 (10), 10387. doi:10.15252/msb.202110387 Peer Reviewed verified by ORBi |
 | WELTER, D., VEGA MORENO, C. G., BIRYUKOV, M., GROUES, V., GHOSH, S., SCHNEIDER, R., & SATAGOPAM, V. (27 November 2020). Supporting findability of COVID-19 research with large-scale text mining of scientific publications [Poster presentation]. International FAIR Convergence Symposium. doi:10.5281/zenodo.4300199 |
 | KRATOCHVIL, M.* , Hunewald, O.* , HEIRENDT, L., Verissimo, V., Vondrášek, J., SATAGOPAM, V., SCHNEIDER, R., TREFOIS, C., & Ollert, M. (18 November 2020). GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets. GigaScience, 9 (11). doi:10.1093/gigascience/giaa127 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | VEGA MORENO, C. G., GROUES, V., OSTASZEWSKI, M., SATAGOPAM, V., & SCHNEIDER, R. (04 September 2020). BioKC: a platform for quality controlled curation and annotation of systems biology models [Paper presentation]. European Conference on Computational Biology. doi:10.5281/zenodo.4033071 |
 | OSTASZEWSKI, M., MAZEIN, A., Gillespie, M., Kuperstein, I., Niarakis, A., Hermjakob, H., Pico, A., Willinghagen, E., Evelo, C., Hasenauer, J., Schreiber, F., Dräger, A., Demir, E., Wolkenhauer, O., Furlong, L., Barillot, E., Dopazo, J., Orta-Resendiz, A., Messina, F., ... SCHNEIDER, R. (2020). COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific Data. doi:10.1038/s41597-020-0477-8 Peer reviewed |
 | HEMEDAN, A., Abd Elaziz, M., Jiao, P., Alavi, A. H., Bahgat, M., OSTASZEWSKI, M., SCHNEIDER, R., Ghazy, H. A., Ewees, A. A., & Lu, S. (19 March 2020). Prediction of the Vaccine-derived Poliovirus Outbreak Incidence: A Hybrid Machine Learning Approach. Scientific Reports, 10 (1), 5058. doi:10.1038/s41598-020-61853-y Peer Reviewed verified by ORBi |
 | Weghuber, D., Forslund, A., Ahlström, H., Bergström, K., Cadamuro, J., Ciba, I., Dahlborn, M., Heu, V., Hofmann, J., Kristinsson, H., Kullberg, J., Ladinger, A., Lagler, F., Lidström, M., Manell, H., Meirik, M., Morwald, K., Roomp, SCHNEIDER, R., ... Bergsten, P. (2020). A six month randomized, double-blind, placebo-controlled trial of weekly exenatide in adolescents with obesity. Pediatric Obesity. doi:10.1111/ijpo.12624 Peer reviewed |
 | VEGA MORENO, C. G., GROUES, V., OSTASZEWSKI, M., SCHNEIDER, R., & SATAGOPAM, V. (2020). BioKC: a collaborative platform for systems biology model curation and annotation. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/44411. doi:10.1101/2020.10.01.322438 |
 | BECKER, R.* , ALPER, P.* , GROUES, V., MUNOZ, S., JAROSZ, Y., LEBIODA, J., REGE, K., TREFOIS, C., SATAGOPAM, V., & SCHNEIDER, R. (04 December 2019). DAISY: A Data Information System for accountability under the General Data Protection Regulation. GigaScience, 8 (12). doi:10.1093/gigascience/giz140 Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | Berghuis, B., Stapleton, C., Sonsma, A., Hulst, J., de Haan, G., Lindhout, D., Demurtas, R., BALLING, R., SCHNEIDER, R., EpiPGX Consortium, & KRAUSE, R. (2019). A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine. Epilepsia Open. doi:10.1002/epi4.12297 Peer reviewed |
 | GU, W., Yildirimman, R., Van der Stuyft, E., Verbeeck, D., HERZINGER, S., SATAGOPAM, V., Barbosa-Silva, A., SCHNEIDER, R., Lange, B., Lehrach, H., Guo, Y., Henderson, D., Rowe, A., & on behalf of the IMI OncoTrack and the IMI eTRIKS consortia. (2019). Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. BMC Bioinformatics, 20 (1), 164. doi:10.1186/s12859-019-2748-y Peer Reviewed verified by ORBi |
 | Brosseron, F., & SCHNEIDER, R. (2019). Multicenter Alzheimer's and Parkinson's disease immune biomarker verification study. Alzheimer's and Dementia: the Journal of the Alzheimer's Association. doi:10.1016/j.jalz.2019.07.018 Peer reviewed |
 | HOKSZA, D., GAWRON, P., OSTASZEWSKI, M., SMULA, E., & SCHNEIDER, R. (2019). MINERVA API and plugins: opening molecular network analysis and visualization to the community. Bioinformatics. doi:10.1093/bioinformatics/btz286 Peer reviewed |
 | HOKSZA, D., GAWRON, P., OSTASZEWSKI, M., Hausenauer, J., & SCHNEIDER, R. (2019). Closing the gap between formats for storing layout information in systems biology. Briefings in Bioinformatics. doi:10.1093/bib/bbz067 Peer Reviewed verified by ORBi |
 | Abd Elaziz, M., Hemedan, A., OSTASZEWSKI, M., SCHNEIDER, R., & Lu, S. (2019). Optimization ACE inhibition activity in hypertension based on random vector functional link and sine-cosine algorithm. Chemometrics and Intelligent Laboratory Systems. doi:10.1016/j.chemolab.2019.05.009 Peer Reviewed verified by ORBi |
 | NORONHA, A., MODAMIO CHAMARRO, J., JAROSZ, Y., GUERARD, E., Sompairac, N., PRECIAT GONZALEZ, G. A., DANIELSDOTTIR, A. D., KRECKE, M., MERTEN, D., HARALDSDOTTIR, H., HEINKEN, A. K., HEIRENDT, L., MAGNUSDOTTIR, S., RAVCHEEV, D., SAHOO, S., GAWRON, P., FRISCIONI, L., GARCIA SANTA CRUZ, B., Prendergast, M., ... THIELE, I. (2018). The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Research. doi:10.1093/nar/gky992 Peer Reviewed verified by ORBi |
 | HERZINGER, S., GROUES, V., GU, W., SATAGOPAM, V., BANDA, P., TREFOIS, C., & SCHNEIDER, R. (2018). Fractalis: A scalable open-source service for platform-independent interactive visual analysis of biomedical data. GigaScience. doi:10.1093/gigascience/giy109 Peer Reviewed verified by ORBi |
 | HOKSZA, D., GAWRON, P., OSTASZEWSKI, M., & SCHNEIDER, R. (2018). MolArt: a molecular structure annotation and visualization tool. Bioinformatics. doi:10.1093/bioinformatics/bty489 Peer reviewed |
 | OSTASZEWSKI, M., GEBEL, S., Kuperstein, I., Mazein, A., Zinovyev, A., Dogrusoz, U., Hasenauer, J., FLEMING, R. M., Le Novere, N., GAWRON, P., Ligon, T., Niarakis, A., Nickerson, D., Weindl, D., BALLING, R., Barillot, E., Auffray, C., & SCHNEIDER, R. (2018). Community-driven roadmap for integrated disease maps. Briefings in Bioinformatics. doi:10.1093/bib/bby024 Peer Reviewed verified by ORBi |
 | Mazein, A., OSTASZEWSKI, M., Kuperstein, I., Watterson, S., Le Novere, N., Lefaudeux, D., De Meulder, B., Pellet, J., Balaur, I., Saqi, M., Nogueira, M. M., He, F., Parton, A., Lemonnier, N., GAWRON, P., GEBEL, S., Hainaut, P., Ollert, M., Dogrusoz, U., ... Auffray, C. (2018). Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms. NPJ Systems Biology and Applications, 4, 21. doi:10.1038/s41540-018-0059-y Peer Reviewed verified by ORBi |
 | Barbosa-Silva, A., Bratfalean, D., GU, W., SATAGOPAM, V., Houston, P., Becnel, L. B., Eifes, S., Richard, F., Tielmann, A., HERZINGER, S., REGE, K., BALLING, R., Peeters, P., & SCHNEIDER, R. (2018). Presenting and Sharing Clinical Data using the eTRIKS Standards Master Tree for tranSMART. Bioinformatics, 809. doi:10.1093/bioinformatics/bty809 Peer Reviewed verified by ORBi |
 | OSTASZEWSKI, M., KIEFFER, E., Danoy, G., SCHNEIDER, R., & BOUVRY, P. (2018). Clustering approaches for visual knowledge exploration in molecular interaction networks. BMC Bioinformatics, 19 (1), 308. doi:10.1186/s12859-018-2314-z Peer Reviewed verified by ORBi |
 | Winterer, G., ANDROSOVA, G., Bender, O., Boraschi, D., Borchers, F., Dschietzig, T. B., Feinkohl, I., Fletcher, P., Gallinat, J., Hadzidiakos, D., Haynes, J. D., Heppner, F., Hetzer, S., Hendrikse, J., Ittermann, B., Kant, I. M. J., Kraft, A., Krannich, A., KRAUSE, R., ... Zacharias, N. (2018). Personalized risk prediction of postoperative cognitive impairment - rationale for the EU-funded BioCog project. European Psychiatry, 50, 34-39. doi:10.1016/j.eurpsy.2017.10.004 Peer Reviewed verified by ORBi |
 | HERZINGER, S., GU, W., SATAGOPAM, V., Eifes, S., REGE, K., BARBOSA DA SILVA, A., & SCHNEIDER, R. (2017). SmartR: An open-source platform for interactive visual analytics for translational research data. Bioinformatics. doi:10.1093/bioinformatics/btx137 Peer Reviewed verified by ORBi |
 | Staaf, J., Labmayr, V., Paulmichl, K., Manell, H., SCHNEIDER, R., & ROOMP, K. (2017). Pancreatic Fat Is Associated With Metabolic Syndrome and Visceral Fat but Not Beta-Cell Function or Body Mass Index in Pediatric Obesity. Pancreas. doi:10.1097/MPA.0000000000000771 Peer Reviewed verified by ORBi |
 | Da Silveira, M., Pruski, C., & SCHNEIDER, R. (Eds.). (2017). Data Integration in the Life Sciences. Springer Verlag. |
 | Gawron, P., OSTASZEWSKI, M., SATAGOPAM, V., GEBEL, S., Mazein, A., Kuzma, M., Zorzan, S., McGee, F., Otjacques, B., BALLING, R., & SCHNEIDER, R. (2016). MINERVA—a platform for visualization and curation of molecular interaction networks. NPJ Systems Biology and Applications. doi:10.1038/npjsba.2016.20 Peer Reviewed verified by ORBi |
 | NORONHA, A., Danielsdóttir, A. D., Jóhannsson, F., Jónsdóttir, S., Jarlsson, S., Gunnarsson, J. P., Brynjólfsson, S., GAWRON, P., SCHNEIDER, R., THIELE, I., & FLEMING, R. M. (2016). ReconMap: An interactive visualisation of human metabolism. Bioinformatics. doi:10.1093/bioinformatics/btw667 Peer reviewed |
 | Auffray, C., BALLING, R., Barroso, I., Bencze, L., Benson, M., Bergeron, J., Bernal-Delgado, E., Blomberg, N., Bock, C., Conesa, A., Del Signore, S., Delogne, C., Devilee, P., Di Meglio, A., Eijkemans, M., Flicek, P., Graf, N., Grimm, V., Guchelaar, H.-J., ... Zanetti, G. (2016). Making sense of big data in health research: Towards an EU action plan. Genome Medicine, 8 (1), 71. doi:10.1186/s13073-016-0323-y Peer Reviewed verified by ORBi |
 | SATAGOPAM, V., GU, W., Eifes, S., Gawron, P., OSTASZEWSKI, M., GEBEL, S., Barbosa-Silva, A., BALLING, R., & SCHNEIDER, R. (2016). Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data, 4 (2), 97-108. doi:10.1089/big.2015.0057 Peer reviewed |
 | Hofmann-Apitius, M., Ball, G., GEBEL, S., de Bono, SCHNEIDER, R., Page, M., Kodamulli, A., Younesi, E., Ebeling, C., Tegner, J., & Canard, L. (07 December 2015). Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders. International Journal of Molecular Sciences, 16 (12), 29179-29206. doi:10.3390/ijms161226148 Peer Reviewed verified by ORBi |
 | GLAAB, E., & SCHNEIDER, R. (15 June 2015). Shared alterations in the human brain transcriptome during adult aging and in Parkinson's disease [Poster presentation]. EMBO Symposium on Mechanisms of Neurodegeneration 2015, Heidelberg, Germany. |
 | GLAAB, E., & SCHNEIDER, R. (February 2015). Comparative pathway and network analysis of brain transcriptome changes during adult aging and in Parkinson's disease. Neurobiology of Disease, 74, 1-13. doi:10.1016/j.nbd.2014.11.002 Peer Reviewed verified by ORBi |
 | GLAAB, E., & SCHNEIDER, R. (2015). RepExplore: Addressing technical replicate variance in proteomics and metabolomics data analysis. Bioinformatics, 31 (13), 2235. doi:10.1093/bioinformatics/btv127 Peer reviewed |
 | NIELSEN, S. S., DANOY, G., Jurkowski, W., Jimenez Laredo, J. L., SCHNEIDER, R., Talbi, E.-G., & BOUVRY, P. (2015). A Novel Multi-objectivisation Approach for Optimising the Protein Inverse Folding Problem. In Applications of Evolutionary Computation: 18th European Conference, EvoApplications 2015, Copenhagen, Denmark, April 8-10, 2015, Proceedings. Peer reviewed |
 | Jimenez-Sanchez, M., Lam, W., Hannus, M., Sonnichsen, B., Imarisio, S., Fleming, A., Tarditi, A., Menzies, F., Ed Dami, T., Xu, C., Gonzalez-Couto, E., Lazzeroni, G., Heitz, F., Diamanti, D., Massai, L., SATAGOPAM, V., Marconi, G., Caramelli, C., Nencini, A., ... Rubinsztein, D. C. (2015). siRNA screen identifies QPCT as a druggable target for Huntington's disease. Nature Chemical Biology, 11 (5), 347–354. doi:10.1038/nchembio.1790 Peer Reviewed verified by ORBi |
 | ANDROSOVA, G., KRAUSE, R., Winterer, G., & SCHNEIDER, R. (2015). Biomarkers of postoperative delirium and cognitive dysfunction. Frontiers in Aging Neuroscience, 7 (112). doi:10.3389/fnagi.2015.00112 Peer Reviewed verified by ORBi |
 | KRISHNA, A., BIRYUKOV, M., TREFOIS, C., ANTONY, P., Hussong, R., LIN, J., Heinäniemi, M., Glusman, G., Köglsberger, S., BOYD, O., van den Berg, B. H. J., Linke, D., Huang, D., Wang, K., Hood, L., Tholey, A., SCHNEIDER, R., GALAS, D. J., BALLING, R., & MAY, P. (20 December 2014). Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson’s disease. BMC Genomics, 15 (1154). doi:10.1186/1471-2164-15-1154 Peer Reviewed verified by ORBi |
 | TREFOIS, C., JAROSZ, Y., GU, W., SATAGOPAM, V., CORONADO, S., & SCHNEIDER, R. (December 2014). Reproducible Research Results R3 [Poster presentation]. 9th Benelux Bioinformatics Conference, Luxembourg, Luxembourg. |
 | Papanikolaou, N., Pavlopoulos, G. A., Pafilis, E., Theodosiou, T., SCHNEIDER, R., Satagopam, V. P., Ouzounis, C., Eliopoulos, A., Promponas, V., & Iliopoulos, I. (2014). BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinformatics. doi:10.1093/bioinformatics/btu524 Peer reviewed |
 | Yachdav, G., Kloppman, Kajan, Hecht, Goldberg, Hamp, Honigschmid, Schafferhans, Roos, M., Bernhofer, Richter, Ashkenazy, Punta, Schlessinger, Bromberg, SCHNEIDER, R., Vriend, Sander, Ben-Tal, & Rost. (05 May 2014). PredictProtein--an open resource for online prediction of protein structural and functional features. Nucleic Acids Research, 42 (8). doi:10.1093/nar/gku366 Peer reviewed |
 | NIELSEN, S. S., JURKOWSKI, W., DANOY, G., JIMENEZ LAREDO, J. L., SCHNEIDER, R., Talbi, E.-G., & BOUVRY, P. (2014). Evolutionary multi objective optimisation with diversity as objective for the protein structure similarity problem [Paper presentation]. Natural computing for protein structure prediction Workshop, 13th International Conference on Parallel Problem Solving From Nature (PPSN), Ljubljana, Slovenia. |
 | NIELSEN, S. S., JURKOWSKI, W., DANOY, G., JIMENEZ LAREDO, J. L., SCHNEIDER, R., Talbi, E.-G., & BOUVRY, P. (2014). Evolutionary Multi-Objective Optimisation with Quantile Constraint for the Protein Structure Similarity Problem [Paper presentation]. 5th International Conference on Metaheuristics and Nature Inspired Computing (META). |
 | GLAAB, E., & SCHNEIDER, R. (2014). Addressing Technical Replicate Variance in Omics Data Analysis [Poster presentation]. Benelux Bioinformatics Conference 2014. |
 | Fujita, K. A., OSTASZEWSKI, M., Matsuoka, Y., Ghosh, S., GLAAB, E., TREFOIS, C., CRESPO, I., PERUMAL, T. M., JURKOWSKI, W., ANTONY, P., DIEDERICH, N., BUTTINI, M., Kodama, A., SATAGOPAM, V., EIFES, S., DEL SOL MESA, A., SCHNEIDER, R., Kitano, H., & BALLING, R. (2014). Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map. Molecular Neurobiology. doi:10.1007/s12035-013-8489-4 Peer Reviewed verified by ORBi |
 | BINDER, J. X., Pletscher-Frankild, S., Tsafou, K., Stolte, C., O'Donoghue, S. I., SCHNEIDER, R., & Jensen, L. J. (2014). COMPARTMENTS: unification and visualization of protein subcellular localization evidence. Database: The Journal of Biological Databases and Curation, 2014, 012. doi:10.1093/database/bau012 Peer Reviewed verified by ORBi |
 | Davey, N. E., SATAGOPAM, V., Santiago-Mozos, S., Villacorta-Martin, C., Bharat, T. A. M., SCHNEIDER, R., & Briggs, J. A. G. (2014). The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data. PLoS Computational Biology. doi:10.1371/journal.pcbi.1003951 Peer Reviewed verified by ORBi |
 | OSTASZEWSKI, M., Fujita, K., Matsuoka, Y., Ghosh, S., GLAAB, E., TREFOIS, C., CRESPO, I., PERUMAL, T. M., JURKOWSKI, W., ANTONY, P., DIEDERICH, N., BUTTINI, M., KOLODKIN, A., Kodama, A., SATAGOPAM, V., BIRYUKOV, M., EIFES, S., DEL SOL MESA, A., SCHNEIDER, R., ... BALLING, R. (09 March 2013). The Parkinson's Disease Map: A Framework for Integration, Curation and Exploration of Disease-related Pathways [Poster presentation]. The 11th International Conference on Alzheimer's & Parkinson's Diseases, Florence, Italy. |
 | Chowdhury, A., SATAGOPAM, V., Manukyan, L., Artemenko, K. A., Fung, Y. M. E., SCHNEIDER, R., Bergquist, J., & Bergsten, P. (2013). Signaling in Insulin-Secreting MIN6 Pseudoislets and Monolayer Cells. Journal of Proteome Research. doi:10.1021/pr400864w Peer Reviewed verified by ORBi |
 | Bali, K. K., Selvaraj, D., SATAGOPAM, V., Lu, J., SCHNEIDER, R., & Kuner, R. (2013). Genome-wide identification and functional analyses of microRNA signatures associated with cancer pain. EMBO Molecular Medicine, 5 (11), 1740-58. doi:10.1002/emmm.201302797 Peer Reviewed verified by ORBi |
 | Ballereau, S., GLAAB, E., KOLODKIN, A., Chaiboonchoe, A., BIRYUKOV, M., VLASSIS, N., Ahmed, H., Pellet, J., Baliga, N., HOOD, L., SCHNEIDER, R., BALLING, R., & Auffray, C. (2013). Functional Genomics, Proteomics, Metabolomics and Bioinformatics for Systems Biology. In A. Prokop & B. Csukás (Eds.), Systems Biology: Integrative Biology and Simulation Tools. Springer. doi:10.1007/978-94-007-6803-1_1 Peer reviewed |
 | Secrier, M., & SCHNEIDER, R. (2013). PhenoTimer: Software for the Visual Mapping of Time-Resolved Phenotypic Landscapes. PLoS ONE, 8 (8), 72361. doi:10.1371/journal.pone.0072361 Peer Reviewed verified by ORBi |
 | Secrier, M., & SCHNEIDER, R. (2013). Visualizing time-related data in biology, a review. Briefings in Bioinformatics. doi:10.1093/bib/bbt021 Peer Reviewed verified by ORBi |
 | Jimenez, R., Albar, J., Bhak, J., Blatter, M.-C., Blicher, T., Brazas, M., Brooksbank, C., Budd, A., Rivas, J. D. L., Dreyer, J., van Driel, M. A., Dunn, M. J., Fernandes, P. L., van Gelder, C. W. G., Hermjakob, H., Ioannidis, V., Judge, D. P., Kahlem, P., Korpelainen, E., ... Corpas, M. (2013). IAnn: An event sharing platform for the life sciences. Bioinformatics, 1-2. doi:10.1093/bioinformatics/btt306 Peer reviewed |
 | Simonetti, M., Hagenston, A., Vardeh, D., Freitag, E., Mauceri, D., Lu, J., SATAGOPAM, V., SCHNEIDER, R., Costigan, M., Bading, H., & Kuner, R. (2013). Nuclear calcium signaling in spinal neurons drives a genomic program required for persistent inflammatory pain. Neuron, 77 (1), 43-57. doi:10.1016/j.neuron.2012.10.037 Peer Reviewed verified by ORBi |
 | Pavlopoulos, G. A., Oulas, A., Iacucci, E., Sifrim, A., Moreau, Y., SCHNEIDER, R., Aerts, J., & Iliopoulos, I. (2013). Unraveling genomic variation from next generation sequencing data. BioData Mining, 6 (1), 13. doi:10.1186/1756-0381-6-13 Peer Reviewed verified by ORBi |
 | Bali, K. K., Venkataramani, V., SATAGOPAM, V., Gupta, P., SCHNEIDER, R., & Kuner, R. (2013). Transcriptional mechanisms underlying sensitization of peripheral sensory neurons by Granulocyte-/Granulocyte-macrophage colony stimulating factors. Molecular Pain, 9 (1), 48. doi:10.1186/1744-8069-9-48 Peer Reviewed verified by ORBi |
 | GEORGATOS, F., Ballereau, S., Pellet, J., Ghanem, M., Price, N., HOOD, L., Guo, Y. K., Boutigny, D., Auffray, C., BALLING, R., & SCHNEIDER, R. (2013). Computational infrastructures for data and knowledge management in systems biology. In A. Prokop & B. Csukás (Eds.), Systems Biology: Integrative Biology and Simulation Tools. Springer. doi:10.1007/978-94-007-6803-1_13 Peer reviewed |
 | Pafilis, E., Pavlopoulos, G., SATAGOPAM, V., Papanikolaou, N., Horn, H., Arvanitidis, C., Jensen, L. J., SCHNEIDER, R., & Iliopoulos, I. (2013). OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction [Poster presentation]. 13th IEEE International Conference on Bioinformatics and Bioengineering (BIBE13), Chania, Greece. doi:10.1109/BIBE.2013.6701679 |
TREFOIS, C., Fujita, A. K., OSTASZEWSKI, M., Matsuoka, Y., Ghosh, S., GLAAB, E., Crespo, I., Perumal, T. M., Jurkowski, W., ANTONY, P., DIEDERICH, N., BUTTINI, M., Kodama, A., SATAGOPAM, V., EIFES, S., DEL SOL MESA, A., SCHNEIDER, R., Kitano, H., & BALLING, R. (August 2012). Constructing a comprehensive map of Parkinson’s disease to elucidate underlying mechanisms of its multifaceted molecular pathology [Poster presentation]. The 13th International Conference on Systems Biology. |
 | Rost, B., Gaasterland, T., Lengauer, T., Linial, M., Markel, S., McKay, B. J. M., SCHNEIDER, R., Horton, P., & Kelso, J. (2012). Paving the future: finding suitable ISMB venues. Bioinformatics, 28 (19), 2556-9. doi:10.1093/bioinformatics/bts420 Peer reviewed |
 | Corpas, M., Fatumo, S., & SCHNEIDER, R. (2012). How Not to Be a Bioinformatician. Source Code for Biology and Medicine. doi:10.1186/1751-0473-7-3 Peer Reviewed verified by ORBi |
 | Secrier, M., Pavlopoulos, G. A., Aerts, J., & SCHNEIDER, R. (2012). Arena3D: visualizing time-driven phenotypic differences in biological systems. BMC Bioinformatics, (13), 45. doi:10.1186/1471-2105-13-45 Peer Reviewed verified by ORBi |
 | Iacucci, E., Tranchevent, L. C., Popovic, D., Pavlopoulos, G. A., De Moor, B., SCHNEIDER, R., & Moreau, Y. (2012). ReLiance: a machine learning and literature-based prioritization of receptor—ligand pairings. Bioinformatics, 28 (18), 569-i574. doi:10.1093/bioinformatics/bts391 Peer reviewed |
 | Michalopoulos, I., Pavlopoulos, G., Malatras, A., Karelas, A., Kostadima, M.-A., SCHNEIDER, R., & Kossida, S. (2012). Human gene correlation analysis (HGCA): A tool for the identification of transcriptionally co-expressed genes. BMC Research Notes, 5 (265), 1-11. doi:10.1186/1756-0500-5-265 Peer Reviewed verified by ORBi |
 | Soldatos, T. G., O’Donoghue, S. I., Satagopam, V. P., Barbosa-Silva, A., Pavlopoulos, G. A., Wanderley-Nogueira, A. C., Soares-Cavalcanti, N. M., & SCHNEIDER, R. (2012). Caipirini: using gene sets to rank literature. BioData Mining, 5 (1). doi:10.1186/1756-0381-5-1 Peer Reviewed verified by ORBi |
 | GLAAB, E., Baudot, A., Krasnogor, N., SCHNEIDER, R., & Valencia, A. (2012). EnrichNet: network-based gene set enrichment analysis. Bioinformatics, 28 (18), 451-i457. doi:10.1093/bioinformatics/bts389 Peer reviewed |
 | Azuaje, F. J., Heymann, M., Ternes, A. M., WIENECKE-BALDACCHINO, A., Struck, D., Moes, D., & SCHNEIDER, R. (2012). Bioinformatics as a driver, not a passenger, of translational biomedical research: Perspectives from the 6th Benelux bioinformatics conference. Journal of Clinical Bioinformatics, 2 (7). doi:10.1186/2043-9113-2-7 Peer Reviewed verified by ORBi |
 | GLAAB, E., & SCHNEIDER, R. (2012). PathVar: analysis of gene and protein expression variance in cellular pathways using microarray data. Bioinformatics, 446-447. doi:10.1093/bioinformatics/btr656 Peer reviewed |
 | Pavlopoulos, G. A., Secrier, M., Moschopoulos, C. N., Soldatos, T. G., Kossida, S., Aerts, J., SCHNEIDER, R., & Bagos, P. G. (2011). Using graph theory to analyze biological networks. BioData Mining, 4 (10), 1-27. doi:10.1186/1756-0381-4-10 Peer Reviewed verified by ORBi |
 | Moschopoulos, C. N., Pavlopoulos, G. A., Iacucci, E., Aerts, J., Likothanassis, S., SCHNEIDER, R., & Kossida, S. (2011). Which clustering algorithm is better for predicting protein complexes? BMC Research Notes, (4), 549. doi:10.1186/1756-0500-4-549 Peer Reviewed verified by ORBi |
 | Pavlopoulos, G. A., Hooper, S. D., Sifrim, A., SCHNEIDER, R., & Aerts, J. (2011). Medusa: A tool for exploring and clustering biological networks. BMC Research Notes, 4 (1), 384. doi:10.1186/1756-0500-4-384 Peer Reviewed verified by ORBi |
 | Joosten, R., Beek, T., Krieger, E., Hekkelman, M., Hooft, R., SCHNEIDER, R., Sander, S., & Vriend, G. (2010). A series of PDB related databases for everyday needs. Nucleic Acids Research, 39 (1), 411-419. doi:10.1093/nar/gkq1105 Peer Reviewed verified by ORBi |
 | Boerner, K., Hermle, J., Sommer, C., Brown, N. P., Knapp, B., Glass, B., Kunkel, J., Torralba, G., Reymann, J., Beil, N., Beneke, J., Pepperkok, R., SCHNEIDER, R., Ludwig, T., Hausmann, M., Hamprecht, F., Erfle, H., Kaderali, L., Kraeusslich, H.-G., & Lehmann, M. J. (2010). From experimental setup to bioinformatics: An RNAi screening platform to identify host factors involved in HIV-1 replication. Biotechnology Journal, 5 (1), 39-49. doi:10.1002/biot.200900226 Peer Reviewed verified by ORBi |
 | Lister, A. L., Datta, R. S., Hofmann, O., KRAUSE, R., Kuhn, M., Roth, B., & SCHNEIDER, R. (2010). Live Coverage of Scientific Conferences Using Web Technologies. PLoS Computational Biology, 6 (1), 1-2. doi:10.1371/journal.pcbi.1000563 Peer Reviewed verified by ORBi |
 | Gehlenborg, N., O'Donoghue, S. I., Baliga, N. S., Goesmann, A., Hibbs, M. A., Kitano, H., Kohlbacher, O., Neuweger, H., SCHNEIDER, R., Tenenbaum, D., & Gavin, A.-C. (2010). Visualization of omics data for systems biology. Nature Methods, 7 (3), 56-68. doi:10.1038/NMETH.1436 Peer Reviewed verified by ORBi |
 | Marji, J., O'Donoghue, S. I., McClintock, D., SATAGOPAM, V., SCHNEIDER, R., Ratner, D., Worman, H. J., Gordon, L. B., & Djabali, K. (2010). Defective Lamin A-Rb Signaling in Hutchinson-Gilford Progeria Syndrome and Reversal by Farnesyltransferase Inhibition. PLoS ONE, 5 (6). doi:10.1371/journal.pone.0011132 Peer Reviewed verified by ORBi |
 | SATAGOPAM, V., Theodoropoulou, M. C., Stampolakis, C. K., Pavlopoulos, G. A., Papandreou, N. C., Bagos, P. G., SCHNEIDER, R., & Hamodrakas, S. J. (2010). GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database: The Journal of Biological Databases and Curation, 2010, 019. doi:10.1093/database/baq019 Peer Reviewed verified by ORBi |
 | Neumann, B., Walter, T., Heriche, J.-K., Bulkescher, J., Erfle, H., Conrad, C., Rogers, P., Poser, I., Held, M., Liebel, U., Cetin, C., Sieckmann, F., Pau, G., Kabbe, R., Wuensche, A., SATAGOPAM, V., Schmitz, M. H. A., Chapuis, C., Gerlich, D. W., ... Ellenberg, J. (2010). Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature, 464 (7289), 721-727. doi:10.1038/nature08869 Peer Reviewed verified by ORBi |
 | O'Donoghue, S. I., Horn, H., Pafilis, E., Haag, S., Kuhn, M., SATAGOPAM, V., SCHNEIDER, R., & Jensen, L. J. (2010). Reflect: A practical approach to web semantics. Journal of Web Semantics, 8 (2-3), 182-189. doi:10.1016/j.websem.2010.03.003 Peer reviewed |
 | Lister, A. L., Datta, R. S., Hofmann, O., KRAUSE, R., Kuhn, M., Roth, B., & SCHNEIDER, R. (2010). Live Coverage of Intelligent Systems for Molecular Biology. PLoS Computational Biology, 6. doi:10.1371/journal.pcbi.1000640 Peer Reviewed verified by ORBi |
 | SATAGOPAM, V., Theodoropoulou, M. C., Christos, S. K., Pavlopoulos, G. A., Papandreou, N. C., Bagos, P. G., SCHNEIDER, R., & Hamodrakas, S. J. (2010). GPCRs, G-proteins, Effectors and their interactions: Human-gpDB, a database employing advanced visualization tools and data integration techniques. Database: The Journal of Biological Databases and Curation. Peer Reviewed verified by ORBi |
 | Pavlopoulos, G. A., Soldatos, T. G., BARBOSA DA SILVA, A., & SCHNEIDER, R. (2010). A reference guide for tree analysis and visualization. BioData Mining, 3 (1), 1. doi:10.1186/1756-0381-3-1 Peer Reviewed verified by ORBi |
 | BARBOSA DA SILVA, A., Soldatos, T. G., Magalhaes, I. L. F., Pavlopoulos, G. A., Fontaine, J.-F., Andrade-Navarro, M. A., SCHNEIDER, R., & Ortega, J. M. (2010). LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships. BMC Bioinformatics, 11, 70. doi:10.1186/1471-2105-11-70 Peer Reviewed verified by ORBi |
 | Soldatos, T. G., O'Donoghue, S. I., SATAGOPAM, V., Jensen, L. J., Brown, N. P., BARBOSA DA SILVA, A., & SCHNEIDER, R. (2010). Martini: using literature keywords to compare gene sets. Nucleic Acids Research, 38 (1), 26-38. doi:10.1093/nar/gkp876 Peer Reviewed verified by ORBi |
 | Moschopoulos, C. N., Pavlopoulos, G. A., SCHNEIDER, R., Likothanassis, S. D., & Kossida, S. (2009). GIBA: a clustering tool for detecting protein complexes. BMC Bioinformatics, 10, 1-2. doi:10.1186/1471-2105-10-S6-S11 Peer Reviewed verified by ORBi |
 | Pafilis, E., O'Donoghue, S. I., Jensen, L. J., Horn, H., Kuhn, M., Brown, N. P., & SCHNEIDER, R. (2009). Reflect: augmented browsing for the life scientist. Nature Biotechnology, 27 (6), 508-510. doi:10.1038/nbt0609-508 Peer Reviewed verified by ORBi |
 | Pavlopoulos, G. A., Moschopoulos, C. N., Hooper, S. D., SCHNEIDER, R., & Kossida, S. (2009). jClust: a clustering and visualization toolbox. Bioinformatics, 25 (15), 1994-1996. doi:10.1093/bioinformatics/btp330 Peer reviewed |
 | Pavlopoulos, G. A., Pafilis, E., Kuhn, M., Hooper, S. D., & SCHNEIDER, R. (2009). OnTheFly: a tool for automated document-based text annotation, data linking and network generation. Bioinformatics, 25 (7), 977-978. doi:10.1093/bioinformatics/btp081 Peer reviewed |
 | Bromberg, Y., Yachdav, G., Ofran, Y., SCHNEIDER, R., & Rost, B. (2009). New in protein structure and function annotation: Hotspots, single nucleotide polymorphisms and the 'Deep Web'. Current Opinion in Drug Discovery and Development, 12 (3), 408-419. Peer Reviewed verified by ORBi |
 | Pavlopoulos, G. A., Wegener, A. L., & SCHNEIDER, R. (2008). A survey of visualization tools for biological network analysis. BioData Mining. doi:10.1186/1756-0381-1-12 Peer Reviewed verified by ORBi |
 | Guenther, S., Kuhn, M., Dunkel, M., Campillos, M., Senger, C., Petsalaki, E., Ahmed, J., Urdiales, E. G., Gewiess, A., Jensen, L. J., SCHNEIDER, R., Skoblo, R., Russell, R. B., Bourne, P. E., Bork, P., & Preissner, R. (2008). SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Research, 36 (SI), 919-922. doi:10.1093/nar/gkm862 Peer Reviewed verified by ORBi |
 | Pavlopoulos, G. A., O'Donoghue, S. I., SATAGOPAM, V., Soldatos, T. G., Pafilis, E., & SCHNEIDER, R. (2008). Arena3D: visualization of biological networks in 3D. BMC Systems Biology, 2, 1-2. doi:10.1186/1752-0509-2-104 Peer Reviewed verified by ORBi |
 | BARBOSA DA SILVA, A., SATAGOPAM, V., SCHNEIDER, R., & Ortega, J. M. (2008). Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence. BMC Bioinformatics, 9, 141. doi:10.1186/1471-2105-9-141 Peer Reviewed verified by ORBi |
BARBOSA DA SILVA, A., Pafilis, E., Ortega, J. M., & SCHNEIDER, R. (2007). Development of SRS.php, a Simple Object Access Protocol-based library for data acquisition from integrated biological databases. Genetics and Molecular Research, 6 (4), 1142-1150. Peer Reviewed verified by ORBi |
Erhardt, R. A. A., SCHNEIDER, R., & Blaschke, C. (2006). Status of text-mining techniques applied to biomedical text. Drug Discovery Today, 11 (7-8), 315-325. doi:10.1016/j.drudis.2006.02.011 Peer Reviewed verified by ORBi |
SCHNEIDER, R., & Voss, H. (2006). Foreword. In In Silico Technologies in Drug Target Identification and Validation (pp. 1-2). St Lucie Pr. Peer reviewed |
 | Kremer, A., SCHNEIDER, R., & Terstappen, G. C. (2005). A bioinformatics perspective on proteomics: Data storage, analysis, and integration. Bioscience Reports, 25 (1-2), 95-106. doi:10.1007/s10540-005-2850-4 Peer reviewed |
Ofran, Y., Punta, M., SCHNEIDER, R., & Rost, B. (2005). Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery. Drug Discovery Today, 10 (21), 1475-1482. doi:10.1016/S1359-6446(05)03621-4 Peer Reviewed verified by ORBi |
Jackson, D., & SCHNEIDER, R. (2005). Ensemble and UniProt (Swiss-Prot). Genomics, Proteomics and Bioinformatics, 1-2. Peer Reviewed verified by ORBi |
Ramakrishnan, S., Caruso, A., & SCHNEIDER, R. (2002). Improving Research Productivity at a Pharmaceutical Company. LION bioscience AG White Paper. |
Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Birney, E., Bucher, P., Codani, J. J., Corpet, F., Croning, M. D. R., Durbin, R., Etzold, T., Fleischmann, W., Gouzy, J., Hermjakob, H., Jonassen, I., Kahn, D., Kanapin, A., SCHNEIDER, R., Servant, F., & Zdobnov, E. (2000). INTERPRO. Bioinformatics. doi:10.1093/bioinformatics/16.12.1145 Peer reviewed |
SCHNEIDER, R. (2000). Datenexplosion erschwert Bioforschung. Frankfurter Allgemeine Zeitung. |
SCHNEIDER, R. (2000). Bioinformatik: Verloren im Datendschungel ? Nachrichten aus der Chemie: Zeitschrift der Gesellschaft Deutscher Chemike, 48 (5), 622-625. doi:10.1002/nadc.20000480508 |
Dodge, C., SCHNEIDER, R., & Sander, C. (1998). The HSSP database of protein structure sequence alignments and family profiles. Nucleic Acids Research, 26 (1), 313-315. doi:10.1093/nar/26.1.313 Peer Reviewed verified by ORBi |
SCHNEIDER, R. (1998). Functional Genome Analysis. Proceedings zur Tagung Hoechstleistungsrechnen in der Chemie. Tagung fuer industrielle Anwender. |
Rost, B., SCHNEIDER, R., & Sander, C. (1997). Pedestrian guide to analyzing sequence databases. WWW-publication. |
 | Rost, B., SCHNEIDER, R., & Sander, C. (1997). Protein fold recognition by prediction-based threading. Journal of Molecular Biology, 270 (3), 471-480. doi:10.1006/jmbi.1997.1101 Peer Reviewed verified by ORBi |
 | Andrade, M. A., Daruvar, A., Casari, G., SCHNEIDER, R., Termier, M., & Sander, C. (1997). Characterization of new proteins found by analysis of short open reading frames from the full yeast genome. Journal of Yeast and Fungal Research, 13 (14), 1363-1374. Peer Reviewed verified by ORBi |
 | Andrade, M., Casari, G., deDaruvar, A., Sander, C., SCHNEIDER, R., Tamames, J., Valencia, A., & Ouzounis, C. (1997). Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function. Computer Applications in the Biosciences [=CABIOS], 13 (4), 481-483. doi:10.1093/bioinformatics/13.4.481 Peer reviewed |
SCHNEIDER, R., deDaruvar, A., & Sander, C. (1997). The HSSP database of protein structure-sequence alignments. Nucleic Acids Research, 25 (1), 226-230. doi:10.1093/nar/25.1.226 Peer Reviewed verified by ORBi |
 | SCHNEIDER, R., & Schlenkrich, M. (1996). GeneCrunch and Europort, examples for Hierarchical Supercomputing at Silicon Graphics. WWW-publication. |
 | Casari, G., Daruvar, D., Sander, C., & SCHNEIDER, R. (1996). Bioinformatics and the discovery of gene function. Trends in Genetics, 128 (7), 244-245. doi:10.1016/0168-9525(96)30057-7 Peer reviewed |
SCHNEIDER, R., & Sander, C. (1996). The HSSP database of protein structure sequence alignments. Nucleic Acids Research, 24 (1), 201-205. doi:10.1093/nar/24.1.201 Peer Reviewed verified by ORBi |
SCHNEIDER, R., Casari, G., Daruvar, A., Bremer, P., Schlenkrich, M., Mercille, R., Vollhardt, H., & Sander, C. (1996). GeneCrunch: Experiences on the SGI POWER CHALLENGEarray with Bioinformatics applications. Supercomputer 96: Anwendungen, Architekturen, Trends. Peer reviewed |
 | CASARI, G., ANDRADE, M. A., BORK, P., BOYLE, J., DARUVAR, A., OUZOUNIS, C., SCHNEIDER, R., TAMAMES, J., VALENCIA, A., & SANDER, C. (1995). CHALLENGING TIMES FOR BIOINFORMATICS. Nature, 376 (6542), 647-648. doi:10.1038/376647a0 Peer Reviewed verified by ORBi |
BORK, P., OUZOUNIS, C., CASARI, G., SCHNEIDER, R., SANDER, C., DOLAN, M., GILBERT, W., & GILLEVET, P. M. (1995). EXPLORING THE MYCOPLASMA-CAPRICOLUM GENOME - A MINIMAL CELL REVEALS ITS PHYSIOLOGY. Molecular Microbiology, 16 (5), 955-967. doi:10.1111/j.1365-2958.1995.tb02321.x Peer Reviewed verified by ORBi |
SCHNEIDER, R., Casari, G., & Sander, C. (1995). Fast and sensitive search of information databases for biological relationships. Statustagung des BMBF, HPSC 95, Stand und Perspektiven des Parallelen Höchstleistungsrechnens und seiner Anwendungen. Peer reviewed |
 | Scharf, M., SCHNEIDER, R., Casari, G., Bork, P., Valencia, A., Ouzounis, C., & Sander, C. (1994). GeneQuiz: a workbench for sequence analysis. Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, ISMB-94, 348-353. Peer reviewed |
ROST, B., SANDER, C., & SCHNEIDER, R. (1994). REDEFINING THE GOALS OF PROTEIN SECONDARY STRUCTURE PREDICTION. Journal of Molecular Biology, 235 (1), 13-26. doi:10.1016/S0022-2836(05)80007-5 Peer Reviewed verified by ORBi |
Göbel, U., Sander, C., SCHNEIDER, R., & Valencia, A. (1994). Correlated mutations and residue contacts in proteins. Proteins, 18, 309-317. doi:10.1002/prot.340180402 Peer Reviewed verified by ORBi |
SCHNEIDER, R. (1994). Sequenz und Sequenz-Struktur Vergleiche und deren Anwendung für die Struktur- und Funktionsvorhersage von Proteinen [Doctoral thesis, University of Heidelberg]. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/4446 |
 | ROST, B., SANDER, C., & SCHNEIDER, R. (1994). PHD - AN AUTOMATIC MAIL SERVER FOR PROTEIN SECONDARY STRUCTURE PREDICTION. Computer Applications in the Biosciences [=CABIOS], 10 (1), 53-60. doi:10.1093/bioinformatics/10.1.53 Peer reviewed |
SANDER, C., & SCHNEIDER, R. (1994). THE HSSP DATABASE OF PROTEIN-STRUCTURE SEQUENCE ALIGNMENTS. Nucleic Acids Research, 22 (17), 3597-3599. Peer Reviewed verified by ORBi |
Rost, B., Sander, C., & SCHNEIDER, R. (1994). Evolution and Neural Networks – Protein Secondary Structure Prediction Above 71% Accuracy. Proceedings of the 27th Hawaii International Conference on System Sciences, Vol. V, Biotechnology Computing. Peer reviewed |
 | SANDER, C., & SCHNEIDER, R. (1993). THE HSSP DATA-BASE OF PROTEIN STRUCTURE-SEQUENCE ALIGNMENTS. Nucleic Acids Research, 21 (13), 3105-3109. doi:10.1093/nar/21.13.3105 Peer Reviewed verified by ORBi |
 | ROST, B., SCHNEIDER, R., & SANDER, C. (1993). PROGRESS IN PROTEIN-STRUCTURE PREDICTION. Trends in Biochemical Sciences - Regular Edition, 18 (4), 120-123. doi:10.1016/0968-0004(93)90017-H Peer reviewed |
 | OUZOUNIS, C., SANDER, C., SCHARF, M., & SCHNEIDER, R. (1993). PREDICTION OF PROTEIN-STRUCTURE BY EVALUATION OF SEQUENCE-STRUCTURE FITNESS - ALIGNING SEQUENCES TO CONTACT PROFILES DERIVED FROM 3-DIMENSIONAL STRUCTURES. Journal of Molecular Biology, 232 (3), 805-825. doi:10.1006/jmbi.1993.1433 Peer Reviewed verified by ORBi |
Sander, C., & SCHNEIDER, R. (1993). From Sequence Similarity to Structural Homology of Proteins. Computation of Biomolecular Structures, Achievements, Problems and Perspectives, 15-28. Peer reviewed |
Sander, C., & SCHNEIDER, R. (1993). MaxHom. The ZEUS Consortium Massively Parallel Computing, Technical Report PC2 / TR-006-94. |
 | BORK, P., OUZOUNIS, C., SANDER, C., SCHARF, M., SCHNEIDER, R., & SONNHAMMER, E. (1992). WHATS IN A GENOME. Nature, 358 (6384), 287-287. doi:10.1038/358287a0 Peer Reviewed verified by ORBi |
 | BORK, P., OUZOUNIS, C., SANDER, C., SCHARF, M., SCHNEIDER, R., & SONNHAMMER, E. (1992). COMPREHENSIVE SEQUENCE-ANALYSIS OF THE 182 PREDICTED OPEN READING FRAMES OF YEAST CHROMOSOME-III. Protein Science: A Publication of the Protein Society, 1 (12), 1677-1690. doi:10.1002/pro.5560011216 Peer Reviewed verified by ORBi |
 | HOBOHM, U., SCHARF, M., SCHNEIDER, R., & SANDER, C. (1992). SELECTION OF REPRESENTATIVE PROTEIN DATA SETS. Protein Science: A Publication of the Protein Society, 1 (3), 409-417. doi:10.1002/pro.5560010313 Peer Reviewed verified by ORBi |
 | SANDER, C., & SCHNEIDER, R. (1991). DATABASE OF HOMOLOGY-DERIVED PROTEIN STRUCTURES AND THE STRUCTURAL MEANING OF SEQUENCE ALIGNMENT. Proteins, 9 (1), 56-68. doi:10.1002/prot.340090107 Peer Reviewed verified by ORBi |
Dataset: