GREVISSE, Christian ; University of Luxembourg > Faculty of Science, Technology and Communication (FSTC) > Computer Science and Communications Research Unit (CSC)
MULLER, Ian William ; University of Luxembourg > Faculty of Science, Technology and Communication (FSTC)
JIMENEZ LAREDO, Juan Luis ; University of Luxembourg > Faculty of Science, Technology and Communication (FSTC) > Computer Science and Communications Research Unit (CSC)
OSTASZEWSKI, Marek ; University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB)
DANOY, Grégoire ; University of Luxembourg > Faculty of Science, Technology and Communication (FSTC) > Computer Science and Communications Research Unit (CSC)
BOUVRY, Pascal ; University of Luxembourg > Faculty of Science, Technology and Communication (FSTC) > Computer Science and Communications Research Unit (CSC)
Language :
English
Title :
Visualization and Classification of Protein Secondary Structures using Self-Organizing Maps
Publication date :
December 2014
Event name :
IEEE Symposium Series on Computational Intelligence (IEEE SSCI 2014)
Event date :
form 8-12-2014 to 12-12-2014
Audience :
International
Main work title :
IEEE Symposium Series on Computational Intelligence (IEEE SSCI 2014)
R. K. Murray, D. K. Granner, P. A. Mayes, and V. W. Rodwell, Harper's Illustrated Biochemistry (Harper's Biochemistry), 27th ed. McGraw-Hill Medical, Jun. 2006. [Online]. Available: http: //www.amazon.com/exec/obidos/redirect?tag=citeulike07-20&path=ASIN/0071461973
B. Rost, C. Sander, and R. Schneider, "Redefining the Goals of Protein Secondary Structure Prediction," Journal of Molecular Biology, vol. 235, pp. 13-26, 1994.
T. Kohonen, "Self-organized formation of topologically correct feature maps," Biological Cybernetics, vol. 43, no. 1, pp. 59-69, 1982. [Online]. Available: http: //dx.doi.org/10.1007/BF00337288
M. L.Westerlund, "Classification with Kohonen Self-Organizing Maps," 2005.
A. Ultsch and H. P. Siemon, "Kohonen's Self Organizing Feature Maps for Exploratory Data Analysis," in Proceedings of International Neural Networks Conference (INNC). Kluwer Academic Press, 1990, pp. 305-308.
G. Pölzlbauer, M. Dittenbach, and A. Rauber, "A visualization technique for self-organizing maps with vector fields to obtain the cluster structure at desired levels of detail," in Proceedings of the 2005 International Joint Conference on Neural Networks (IJCNN 2005), vol. 3, July 2005, pp. 1558-1563 vol. 3.
E. Pampalk, A. Rauber, and D. Merkl, "Using Smoothed Data Histograms for Cluster Visualization in Self-Organizing Maps," in Artificial Neural Networks-ICANN 2002, ser. Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2002, vol. 2415, pp. 871-876.
A. Ultsch, "Maps for the Visualization of high-dimensional Data Spaces," in Proceedings Workshop on Self-Organizing Maps (WSOM 2003), 2003, pp. 225-230.
R. Mayer, T. Aziz, and A. Rauber, "Visualising Class Distribution on Self-organising Maps," in Artificial Neural Networks-ICANN 2007. Springer Berlin Heidelberg, 2007, vol. 4669, pp. 359-368.
G. Pölzlbauer, A. Rauber, and M. Dittenbach, "Advanced Visualization Techniques for Self-organizing Maps with Graph-Based Methods," in Advances in Neural Networks-ISNN 2005, ser. Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2005, vol. 3497, pp. 75-80.
L. Herrmann and A. Ultsch, "Label Propagation for Semi-Supervised Learning in Self-Organizing Maps," in The 6th International Workshop on Self-Organizing Maps (WSOM 2007): 3-6 Sep 2007; Bielefeld Germany: Neuroinformatics Group, 2007.
X. Zhu, Z. Ghahramani, and J. Lafferty, "Semi-Supervised Learning Using Gaussian Fields and Harmonic Functions," in Proceedings of the 20th International Conference on Machine Learning (ICML), 2003, pp. 912-919.
V. Hall, A. Nash, E. Hines, and A. Rodger, "Elucidating protein secondary structure with circular dichroism and a neural network," J Comput Chem, vol. 34, no. 32, pp. 2774-2786, 2013.
C. Vehlow, H. Stehr, M. Winkelmann, J. M. Duarte, L. Petzold, J. Dinse, and M. Lappe, "CMView: interactive contact map visualization and analysis," Bioinformatics, vol. 27, no. 11, pp. 1573-1574, 2011.
R. Pollock, T. Lane, and M. Watts, "A Kohonen Self-Organizing Map for the Functional Classification of Proteins based on one-dimensional Sequence Information," in Proceedings of the 2002 International Joint Conference on Neural Networks (IJCNN 2002), vol. 1, 2002, pp. 189-192.
W. Kabsch and C. Sander, "Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features," Biopolymers, vol. 22, pp. 2577-637, 1983
