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MAZEIN Alexander

ORCID
0000-0001-7137-4171
Main Referenced Co-authors
OSTASZEWSKI, Marek  (8)
BALAUR, Irina-Afrodita  (7)
Rougny, Adrien (6)
SCHNEIDER, Reinhard  (6)
Dogrusoz, Ugur (5)
Main Referenced Keywords
Humans (8); Software (8); Systems Biology (7); Molecular Biology (6); Signal Transduction (6);
Main Referenced Unit & Research Centers
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group) (1)
Main Referenced Disciplines
Biotechnology (12)
Immunology & infectious disease (4)
Life sciences: Multidisciplinary, general & others (3)
Engineering, computing & technology: Multidisciplinary, general & others (1)
Human health sciences: Multidisciplinary, general & others (1)

Publications (total 17)

The most downloaded
74 downloads
Ostaszewski, M., Niarakis, A., Mazein, A., Kuperstein, I., Phair, R., Orta-Resendiz, A., Singh, V., Aghamiri, S. S., Acencio, M. L., Glaab, E., Ruepp, A., Fobo, G., Montrone, C., Brauner, B., Frishman, G., Monraz Gómez, L. C., Somers, J., Hoch, M., Kumar Gupta, S., ... Schneider, R. (2021). COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology, 17 (10), 10387. doi:10.15252/msb.202110387 https://hdl.handle.net/10993/48746

The most cited

83 citations (Scopus®)

Ostaszewski, M., Mazein, A., Gillespie, M., Kuperstein, I., Niarakis, A., Hermjakob, H., Pico, A., Willinghagen, E., Evelo, C., Hasenauer, J., Schreiber, F., Dräger, A., Demir, E., Wolkenhauer, O., Furlong, L., Barillot, E., Dopazo, J., Orta-Resendiz, A., Messina, F., ... Schneider, R. (2020). COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific Data. doi:10.1038/s41597-020-0477-8 https://hdl.handle.net/10993/46320

ACENCIO, M. L., OSTASZEWSKI, M., MAZEIN, A., Rosenstiel, P., Aden, K., Mishra, N., Andersen, V., Sidiropoulos, P., Banos, A., Filia, A., Rahmouni, S., Finckh, A., GU, W., SCHNEIDER, R., & SATAGOPAM, V. (01 November 2023). The SYSCID map: a graphical and computational resource of molecular mechanisms across rheumatoid arthritis, systemic lupus erythematosus and inflammatory bowel disease. Frontiers in Immunology, 14. doi:10.3389/fimmu.2023.1257321
Peer Reviewed verified by ORBi

Fraser, R., Orta-Resendiz, A., MAZEIN, A., & Dockrell, D. H. (April 2023). Upper respiratory tract mucosal immunity for SARS-CoV-2 vaccines. Trends in Molecular Medicine, 29 (4), 255 - 267. doi:10.1016/j.molmed.2023.01.003
Peer Reviewed verified by ORBi

Fraser, R., Orta-Resendiz, A., Dockrell, D., Müller-Trutwin, M., & MAZEIN, A. (31 March 2023). Severe COVID-19 versus multisystem inflammatory syndrome: comparing two critical outcomes of SARS-CoV-2 infection. European Respiratory Review, 32 (167), 220197. doi:10.1183/16000617.0197-2022
Peer Reviewed verified by ORBi

Rougny, A., BALAUR, I.-A., Luna, A., & MAZEIN, A. (01 March 2023). StonPy: a tool to parse and query collections of SBGN maps in a graph database. Bioinformatics, 39 (3). doi:10.1093/bioinformatics/btad100
Peer Reviewed verified by ORBi

MAZEIN, A., ACENCIO, M. L., BALAUR, I.-A., Rougny, A., WELTER, D., Niarakis, A., Ramirez Ardila, D., Dogrusoz, U., GAWRON, P., SATAGOPAM, V., GU, W., KREMER, A., SCHNEIDER, R., & OSTASZEWSKI, M. (2023). A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers in Bioinformatics, 3, 1197310. doi:10.3389/fbinf.2023.1197310
Peer reviewed

BALAUR, I.-A., Roy, L., Touré, V., MAZEIN, A., & Auffray, C. (01 December 2022). GraphML-SBGN bidirectional converter for metabolic networks. Journal of Integrative Bioinformatics, 19 (4). doi:10.1515/jib-2022-0030
Peer Reviewed verified by ORBi

Pereira, C., MAZEIN, A., Farinha, C. M., Gray, M. A., Kunzelmann, K., OSTASZEWSKI, M., BALAUR, I.-A., Amaral, M. D., & Falcao, A. O. (15 November 2021). CyFi-MAP: an interactive pathway-based resource for cystic fibrosis. Scientific Reports, 11 (1), 22223. doi:10.1038/s41598-021-01618-3
Peer Reviewed verified by ORBi

MAZEIN, A., Rougny, A., Karr, J. R., Saez-Rodriguez, J., OSTASZEWSKI, M., & SCHNEIDER, R. (02 September 2021). Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling. Briefings in Bioinformatics, 22 (5). doi:10.1093/bib/bbab103
Peer Reviewed verified by ORBi

Rougny, A., Touré, V., Albanese, J., Waltemath, D., Shirshov, D., Sorokin, A., Bader, G. D., Blinov, M. L., & MAZEIN, A. (02 September 2021). SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks. Briefings in Bioinformatics, 22 (5). doi:10.1093/bib/bbab049
Peer Reviewed verified by ORBi

Balci, H., Siper, M. C., Saleh, N., Safarli, I., Roy, L., Kilicarslan, M., Ozaydin, R., MAZEIN, A., Auffray, C., Babur, Ö., Demir, E., & Dogrusoz, U. (16 June 2021). Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps. Bioinformatics, 37 (10), 1475 - 1477. doi:10.1093/bioinformatics/btaa850
Peer Reviewed verified by ORBi

MAZEIN, A., Ivanova, O., BALAUR, I.-A., OSTASZEWSKI, M., Berzhitskaya, V., Serebriyskaya, T., Ligon, T., Hasenauer, J., De Meulder, B., Overall, R. W., Roy, L., Knowles, R. G., Wheelock, C. E., Dahlen, S.-E., Chung, K. F., Adcock, I. M., Roberts, G., Djukanovic, R., Pellet, J., ... eTRIKS Consortium. (March 2021). AsthmaMap: An interactive knowledge repository for mechanisms of asthma. Journal of Allergy and Clinical Immunology, 147 (3), 853 - 856. doi:10.1016/j.jaci.2020.11.032
Peer Reviewed verified by ORBi

Ostaszewski, M., Niarakis, A., Mazein, A., Kuperstein, I., Phair, R., Orta-Resendiz, A., Singh, V., Aghamiri, S. S., Acencio, M. L., Glaab, E., Ruepp, A., Fobo, G., Montrone, C., Brauner, B., Frishman, G., Monraz Gómez, L. C., Somers, J., Hoch, M., Kumar Gupta, S., ... Schneider, R. (2021). COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology, 17 (10), 10387. doi:10.15252/msb.202110387
Peer Reviewed verified by ORBi

Bergmann, F. T., Czauderna, T., Dogrusoz, U., Rougny, A., Dräger, A., Touré, V., MAZEIN, A., Blinov, M. L., & Luna, A. (22 June 2020). Systems biology graphical notation markup language (SBGNML) version 0.3. Journal of Integrative Bioinformatics, 17 (2-3). doi:10.1515/jib-2020-0016
Peer Reviewed verified by ORBi

Ostaszewski, M., Mazein, A., Gillespie, M., Kuperstein, I., Niarakis, A., Hermjakob, H., Pico, A., Willinghagen, E., Evelo, C., Hasenauer, J., Schreiber, F., Dräger, A., Demir, E., Wolkenhauer, O., Furlong, L., Barillot, E., Dopazo, J., Orta-Resendiz, A., Messina, F., ... Schneider, R. (2020). COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms. Scientific Data. doi:10.1038/s41597-020-0477-8
Peer reviewed

BALAUR, I.-A., Roy, L., MAZEIN, A., Karaca, S. G., Dogrusoz, U., Barillot, E., & Zinovyev, A. (15 April 2020). cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats. Bioinformatics, 36 (8), 2620 - 2622. doi:10.1093/bioinformatics/btz969
Peer Reviewed verified by ORBi

Singh, V., Kalliolias, G. D., OSTASZEWSKI, M., Veyssiere, M., Pilalis, E., Gawron, P., MAZEIN, A., Bonnet, E., Petit-Teixeira, E., & Niarakis, A. (01 January 2020). RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis. Database: The Journal of Biological Databases and Curation, 2020. doi:10.1093/database/baaa017
Peer Reviewed verified by ORBi

Rougny, A., Touré, V., Moodie, S., BALAUR, I.-A., Czauderna, T., Borlinghaus, H., Dogrusoz, U., MAZEIN, A., Dräger, A., Blinov, M. L., Villéger, A., Haw, R., Demir, E., Mi, H., Sorokin, A., Schreiber, F., & Luna, A. (13 June 2019). Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. Journal of Integrative Bioinformatics, 16 (2). doi:10.1515/jib-2019-0022
Peer Reviewed verified by ORBi

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