  | Waltemath, D., Inau, E., Michaelis, L., SATAGOPAM, V., & BALAUR, I.-A. (07 September 2023). Experiences From FAIRifying Community Data and FAIR Infrastructure in Biomedical Research Domains. Proceedings of the Conference on Research Data Infrastructure, 1. doi:10.52825/cordi.v1i.415  Peer reviewed |
Mokou, M.* , Narayanasamy, S., Stroggilos, R., Balaur, I.-A., Vlahou, A., Mischak, H., & Frantzi, M. (2023). A Drug Repurposing Pipeline Based on Bladder Cancer Integrated Proteotranscriptomics Signatures. In J. Walker (Ed.), Methods in Molecular Biology. Springer. doi:10.1007/978-1-0716-3291-8_4 |
 | Rougny, A., BALAUR, I.-A., Luna, A., & MAZEIN, A. (01 March 2023). StonPy: a tool to parse and query collections of SBGN maps in a graph database. Bioinformatics, 39 (3). doi:10.1093/bioinformatics/btad100 Peer Reviewed verified by ORBi |
 | MAZEIN, A., ACENCIO, M. L., BALAUR, I.-A., Rougny, A., WELTER, D., Niarakis, A., Ramirez Ardila, D., Dogrusoz, U., GAWRON, P., SATAGOPAM, V., GU, W., KREMER, A., SCHNEIDER, R., & OSTASZEWSKI, M. (2023). A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers in Bioinformatics, 3, 1197310. doi:10.3389/fbinf.2023.1197310 Peer reviewed |
 | BALAUR, I.-A., Roy, L., Touré, V., MAZEIN, A., & Auffray, C. (01 December 2022). GraphML-SBGN bidirectional converter for metabolic networks. Journal of Integrative Bioinformatics, 19 (4). doi:10.1515/jib-2022-0030 Peer Reviewed verified by ORBi |
 | Pereira, C., MAZEIN, A., Farinha, C. M., Gray, M. A., Kunzelmann, K., OSTASZEWSKI, M., BALAUR, I.-A., Amaral, M. D., & Falcao, A. O. (15 November 2021). CyFi-MAP: an interactive pathway-based resource for cystic fibrosis. Scientific Reports, 11 (1), 22223. doi:10.1038/s41598-021-01618-3 Peer Reviewed verified by ORBi |
 | MAZEIN, A., Ivanova, O., BALAUR, I.-A., OSTASZEWSKI, M., Berzhitskaya, V., Serebriyskaya, T., Ligon, T., Hasenauer, J., De Meulder, B., Overall, R. W., Roy, L., Knowles, R. G., Wheelock, C. E., Dahlen, S.-E., Chung, K. F., Adcock, I. M., Roberts, G., Djukanovic, R., Pellet, J., ... eTRIKS Consortium. (March 2021). AsthmaMap: An interactive knowledge repository for mechanisms of asthma. Journal of Allergy and Clinical Immunology, 147 (3), 853 - 856. doi:10.1016/j.jaci.2020.11.032 Peer Reviewed verified by ORBi |
 | BALAUR, I.-A., Roy, L., MAZEIN, A., Karaca, S. G., Dogrusoz, U., Barillot, E., & Zinovyev, A. (15 April 2020). cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats. Bioinformatics, 36 (8), 2620 - 2622. doi:10.1093/bioinformatics/btz969 Peer Reviewed verified by ORBi |
 | Rougny, A., Touré, V., Moodie, S., BALAUR, I.-A., Czauderna, T., Borlinghaus, H., Dogrusoz, U., MAZEIN, A., Dräger, A., Blinov, M. L., Villéger, A., Haw, R., Demir, E., Mi, H., Sorokin, A., Schreiber, F., & Luna, A. (13 June 2019). Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. Journal of Integrative Bioinformatics, 16 (2). doi:10.1515/jib-2019-0022 Peer Reviewed verified by ORBi |