  | VILLETTE, R., ORTIS SUNYER, J., NOVIKOVA, P., AHO, V., PETROV, V., HICKL, O., BUSI, S. B., DE RUDDER, C., KUNATH, B., Heintz-Buschart, A., TREZZI, J.-P., HALDER, R., JÄGER, C., LEBRUN, L., DAUJEUMONT, A., Schade, S., Janzen, A., Jehmlich, N., von Bergen, M., ... WILMES, P. (07 October 2025). Integrated multi-omics highlights alterations of gut microbiome functions in prodromal and idiopathic Parkinson’s disease. Microbiome, 13 (1). doi:10.1186/s40168-025-02227-2  Peer Reviewed verified by ORBi |
 | Van Den Bossche, T., Armengaud, J., Benndorf, D., Blakeley-Ruiz, J. A., BRAUER, M., Cheng, K., Creskey, M., Figeys, D., Grenga, L., Griffin, T. J., Henry, C., Hettich, R. L., Holstein, T., Jagtap, P. D., Jehmlich, N., Kim, J., Kleiner, M., KUNATH, B., Malliet, X., ... Metaproteomics Initiative. (June 2025). The microbiologist's guide to metaproteomics. iMeta, 4 (3), 70031. doi:10.1002/imt2.70031 Peer reviewed |
 | Ostrzinski, A., KUNATH, B., Soares, A. R., LACZNY, C. C., HALDER, R., Kallmeyer, J., di Primio, R., WILMES, P., Probst, A. J., Trautwein-Schult, A., & Becher, D. (January 2025). Systematic evaluation of protein extraction for metaproteomic analysis of marine sediment with high clay content. ISME Communications, 5 (1), 074. doi:10.1093/ismeco/ycaf074 Peer Reviewed verified by ORBi |
 | KUNATH, B., HICKL, O., TEIXEIRA QUEIROS, P., MARTIN-GALLAUSIAUX, C., LEBRUN, L., HALDER, R., LACZNY, C. C., Schmidt, T. S., Hayward, M., Becher, D., Heintz-Buschart, A., DE BEAUFORT, C., Bork, P., MAY, P., & WILMES, P. (2022). Alterations of oral microbiota and impact on the gut microbiome in type 1 diabetes mellitus revealed by integrated multi-omic analyses. Microbiome. doi:10.1186/s40168-022-01435-4 Peer Reviewed verified by ORBi |
 | DELOGU, F., KUNATH, B., Queirós, P. M., HALDER, R., LEBRUN, L., Pope, P. B., MAY, P., Widder, S., Muller, E. E. L., & WILMES, P. (2022). Forecasting of a complex microbial community using meta-omics. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/52862. doi:10.1101/2022.10.19.512887 |
 | DE NIES, L., BUSI, S. B., KUNATH, B., MAY, P., & WILMES, P. (16 September 2022). Mobilome-driven segregation of the resistome in biological wastewater treatment. eLife, 11, 81196. doi:10.7554/eLife.81196 Peer Reviewed verified by ORBi |
 | Van den Bossche, T., Arntzen, M., Becher, D., Benndorf, D., Eijsink, V., Henry, C., Jagtap, P., Jehmlich, N., Juste, C., KUNATH, B., Mesuere, B., Muth, T., Pope, P., Seifert, J., Tanca, A., Uzzau, S., WILMES, P., Hettich, R., & Armengaud, J. (December 2021). The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes. Microbiome, 9 (1), 243. doi:10.1186/s40168-021-01176-w Peer Reviewed verified by ORBi |
 | GALATA, V., BUSI, S. B., KUNATH, B., DE NIES, L., CALUSINSKA, M., HALDER, R., MAY, P., WILMES, P., & LACZNY, C. C. (2021). Functional meta-omics provide critical insights into long- and short-read assemblies. Briefings in Bioinformatics. doi:10.1093/bib/bbab330 Peer Reviewed verified by ORBi |
 | Van Den Bossche, T., KUNATH, B., Schallert, K., Schäpe, S. S., Abraham, P. E., Armengaud, J., Arntzen, M. Ø., Bassignani, A., Benndorf, D., Fuchs, S., Giannone, R. J., Griffin, T. J., Hagen, L. H., HALDER, R., Henry, C., Hettich, R. L., Heyer, R., Jagtap, P., Jehmlich, N., ... Muth, T. (2021). Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows. Nature Communications, 12 (1), 7305. doi:10.1038/s41467-021-27542-8 Peer Reviewed verified by ORBi |
 | MARTINEZ ARBAS, S.* , Narayanasamy, S.* , Herold, M., LEBRUN, L., Hoopmann, M. R., Li, S., Lam, T. J., KUNATH, B., Hicks, N. D., Liu, C. M., Price, L. B., LACZNY, C. C., Gillece, J. D., Schupp, J. M., Keim, P. S., Moritz, R. L., Faust, K., Tang, H., Ye, Y., ... WILMES, P. (2020). Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics. Nature Microbiology. Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | Herold, M., MARTINEZ ARBAS, S., Narayanasamy, S., Sheik, A. R., Kleine-Borgmann, L. A. K., LEBRUN, L., KUNATH, B., Roume, H., Bessarab, I., Williams, R. B. H., Gillece, J. D., Schupp, J. M., Keim, P. S., Jäger, C., Hoopman, M. R., Moritz, R. L., Ye, Y., Li, S., Tang, H., ... WILMES, P. (2020). Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance. Nature Communications. doi:10.1038/s41467-020-19006-2 Peer Reviewed verified by ORBi |