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LACZNY Cedric Christian

University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > Systems Ecology

ORCID
0000-0002-1100-1282
Main Referenced Co-authors
WILMES, Paul  (37)
MAY, Patrick  (26)
LEBRUN, Laura  (20)
BUSCHART, Anna  (14)
MULLER, Emilie  (13)
Main Referenced Keywords
Metagenomics (5); metagenomics (3); metatranscriptomics (3); Microbiome (3); activated sludge (2);
Main Referenced Unit & Research Centers
Luxembourg Centre for Systems Biomedicine (LCSB): Eco-Systems Biology (Wilmes Group) (19)
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group) (8)
Luxembourg Centre for Systems Biomedicine (LCSB) (3)
Luxembourg Centre for Systems Biomedicine (LCSB): Machine Learning (Vlassis Group) (3)
Luxembourg Centre for Systems Biomedicine (LCSB): Medical Translational Research (J. Schneider Group) (3)
Main Referenced Disciplines
Microbiology (32)
Environmental sciences & ecology (11)
Genetics & genetic processes (5)
Life sciences: Multidisciplinary, general & others (4)
Biotechnology (3)

Publications (total 39)

The most downloaded
563 downloads
LACZNY, C. C., Pinel, N., VLASSIS, N., & WILMES, P. (2014). Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction. Scientific Reports. doi:10.1038/srep04516 https://hdl.handle.net/10993/16311

The most cited

254 citations (OpenCitations)

LACZNY, C. C., Sternal, T., PLUGARU, V., GAWRON, P., ATASHPENDAR, A., MARGOSSIAN, H. H., CORONADO, S., van der Maaten, L., VLASSIS, N., & WILMES, P. (2015). VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data. Microbiome. doi:10.1186/s40168-014-0066-1 https://hdl.handle.net/10993/20140

HANSEN, B., LACZNY, C. C., AHO, V., Frachet-Bour, A., Habier, J., OSTASZEWSKI, M., Michalsen, A., Hanslian, E., Koppold, D. A., Hartmann, A. M., Steckhan, N., Mollenhauer, B., Schade, S., RUMP, K., SCHNEIDER, J., & WILMES, P. (18 August 2023). Protocol for a multicentre cross-sectional, longitudinal ambulatory clinical trial in rheumatoid arthritis and Parkinson's disease patients analysing the relation between the gut microbiome, fasting and immune status in Germany (ExpoBiome). BMJ Open, 13 (8), 071380. doi:10.1136/bmjopen-2022-071380
Peer Reviewed verified by ORBi

de Nies, L., Galata, V., Martin-Gallausiaux, C., DESPOTOVIC, M., BUSI, S. B., Snoeck, C. J., DELACOUR, L., Budagavi, D. P., LACZNY, C. C., HABIER, J., Lupu, P.-C., HALDER, R., Fritz, J. V., MARQUES, T., Sandt, E., O'Sullivan, M. P., GHOSH, S., SATAGOPAM, V., Consortium, C.-V., ... WILMES, P. (09 March 2023). Altered infective competence of the human gut microbiome in COVID-19. Microbiome, 11 (1), 46. doi:10.1186/s40168-023-01472-7
Peer Reviewed verified by ORBi

KUNATH, B., HICKL, O., TEIXEIRA QUEIROS, P., MARTIN-GALLAUSIAUX, C., LEBRUN, L., HALDER, R., LACZNY, C. C., Schmidt, T. S., Hayward, M., Becher, D., Heintz-Buschart, A., DE BEAUFORT, C., Bork, P., MAY, P., & WILMES, P. (2022). Alterations of oral microbiota and impact on the gut microbiome in type 1 diabetes mellitus revealed by integrated multi-omic analyses. Microbiome. doi:10.1186/s40168-022-01435-4
Peer Reviewed verified by ORBi

WILMES, P., Martin-Gallausiaux, C., OSTASZEWSKI, M., AHO, V., NOVIKOVA, P., LACZNY, C. C., & SCHNEIDER, J. (14 September 2022). The gut microbiome molecular complex in human health and disease. Cell Host and Microbe, 30 (9), 1201-1206. doi:10.1016/j.chom.2022.08.016
Peer Reviewed verified by ORBi

AHO, V., OSTASZEWSKI, M., Martin-Gallausiaux, C., LACZNY, C. C., SCHNEIDER, J., & WILMES, P. (14 September 2022). SnapShot: The Expobiome Map. Cell Host and Microbe, 30 (9), 1340. doi:10.1016/j.chom.2022.08.015
Peer Reviewed verified by ORBi

BRUNHOFEROVA, H., VENDITTI, S., LACZNY, C. C., LEBRUN, L., & HANSEN, J. (26 March 2022). Bioremediation of 27 Micropollutants by Symbiotic Microorganisms of Wetland Macrophytes. Sustainability, 14 (7), 3944. doi:10.3390/su14073944
Peer Reviewed verified by ORBi

Trezzi, J.-P., AHO, V., Jäger, C., Schade, S., Janzen, A., HICKL, O., Kunath, B., THOMAS, M., SCHMIT, K., GARCIA, P., SCIORTINO, A., Martin-Gallausiaux, C., HALDER, R., Huarte, O. U., HEURTAUX, T., Heins-Marroquin, U., Gomez-Giro, G., Weidenbach, K., DELACOUR, L., ... WILMES, P. (2022). An archaeal compound as a driver of Parkinson’s disease pathogenesis. (1). ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/51987. doi:10.21203/rs.3.rs-1827631/v1

DE SAEDELEER, B., MALABIRADE, A., RAMIRO GARCIA, J., HABIER, J., TREZZI, J.-P., Peters, S., DAUJEUMONT, A., HALDER, R., Jäger, C., BUSI, S. B., MAY, P., Oertel, W., Mollenhauer, B., LACZNY, C. C., Hettich, R., & WILMES, P. (2021). Systematic characterization of human gut microbiome-secreted molecules by integrated multi-omics. ISME Communications. doi:10.1038/s43705-021-00078-0
Peer Reviewed verified by ORBi

GALATA, V., BUSI, S. B., KUNATH, B., DE NIES, L., CALUSINSKA, M., HALDER, R., MAY, P., WILMES, P., & LACZNY, C. C. (2021). Functional meta-omics provide critical insights into long- and short-read assemblies. Briefings in Bioinformatics. doi:10.1093/bib/bbab330
Peer Reviewed verified by ORBi

DE NIES, L., Lopes, S., BUSI, S. B., GALATA, V., Heintz-Buschart, A., LACZNY, C. C., MAY, P., & WILMES, P. (2021). PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data. Microbiome. doi:10.1186/s40168-020-00993-9
Peer Reviewed verified by ORBi

MARTINEZ ARBAS, S., NARAYANASAMY, S., Herold, M., LEBRUN, L., Hoopmann, M. R., Li, S., Lam, T. J., Kunath, B. J., Hicks, N. D., Liu, C. M., Price, L. B., LACZNY, C. C., Gillece, J. D., Schupp, J. M., Keim, P. S., Moritz, R. L., Faust, K., Tang, H., Ye, Y., ... WILMES, P. (2021). Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics. Nature Microbiology, 6 (1), 123--135. doi:10.1038/s41564-020-00794-8
Peer Reviewed verified by ORBi

Hayoun, K., Geersens, E., LACZNY, C. C., HALDER, R., Lázaro Sánchez, C., Manna, A., Bringel, F., Ryckelynck, M., WILMES, P., MULLER, E., Alpha-Bazin, A., & Vuilleumier, S. (2020). Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics. Microorganisms. doi:10.3390/microorganisms8121876
Peer reviewed

MARTINEZ ARBAS, S.* , Narayanasamy, S.* , Herold, M., LEBRUN, L., Hoopmann, M. R., Li, S., Lam, T. J., KUNATH, B., Hicks, N. D., Liu, C. M., Price, L. B., LACZNY, C. C., Gillece, J. D., Schupp, J. M., Keim, P. S., Moritz, R. L., Faust, K., Tang, H., Ye, Y., ... WILMES, P. (2020). Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics. Nature Microbiology.
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Herold, M., MARTINEZ ARBAS, S., Narayanasamy, S., Sheik, A. R., Kleine-Borgmann, L. A. K., LEBRUN, L., KUNATH, B., Roume, H., Bessarab, I., Williams, R. B. H., Gillece, J. D., Schupp, J. M., Keim, P. S., Jäger, C., Hoopman, M. R., Moritz, R. L., Ye, Y., Li, S., Tang, H., ... WILMES, P. (2020). Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance. Nature Communications. doi:10.1038/s41467-020-19006-2
Peer Reviewed verified by ORBi

MARTINEZ ARBAS, S., Narayanasamy, S., HEROLD, M., LEBRUN, L., Hicks, N. D., Price, L. B., Gillece, J. D., Schupp, J. M., Lam, T., LACZNY, C. C., Ye, Y., Keim, P. S., Muller, E. E. L., MAY, P., & WILMES, P. (19 October 2018). Critical transitions in microbial communities: mobile genetic elements as drivers of the microbial community dynamics within activated sludge of wastewater treatment [Poster presentation]. PhD days 2018, Belval, Luxembourg.

TREZZI, J.-P., RAMIRO GARCIA, J., LACZNY, C. C., DAUJEUMONT, A., HALDER, R., LEBRUN, L., HEINTZ, A., Oertel, W., Mollenhauer, B., & WILMES, P. (October 2018). Microbiome-derived Multi-omicBiomarkers for Early-stage Detection and Stratification of Parkinson's Disease [Poster presentation]. 4th International Parkinson's Disease Symposium.

MARTINEZ ARBAS, S., Narayanasamy, S., Herold, M., LEBRUN, L., Hicks, N. D., Price, L. B., Gillece, J. D., Schupp, J. M., LACZNY, C. C., Keim, P. S., Muller, E. E. L., MAY, P., & WILMES, P. (11 September 2018). A multi-omic view of invasive genetic elements and their linked prokaryotic population dynamics within a mixed microbial community [Poster presentation]. ECCB Athens, Athens, Greece.

HEROLD, M., NARAYANASAMY, S., MARTINEZ ARBAS, S., MULLER, E., KLEINE-BORGMANN, A. L., LEBRUN, L., ROUME, H., SHEIK, A., Bessarab, I., Williams, R., Gillece, J., Schupp, J., Keim, P., Jäger, C., Hoopmann, M., Li, S., Tang, H., HEINTZ, A., MAY, P., ... WILMES, P. (August 2018). Integrated time-resolved multi-omics for understanding microbial niche ecology [Poster presentation]. 17th International Symposium on Microbial Ecology, Leipzig, Germany.

TREZZI, J.-P., HEINTZ, A., MULLER, E., NARAYANASAMY, S., JAROSZ, Y., HEROLD, M., KAYSEN, A., LACZNY, C. C., MAY, P., & WILMES, P. (August 2018). Microbiome-derived Multi-omicBiomarkers for Early-stage Detection and Stratification of Parkinson's Disease [Poster presentation]. 17th International Symposium on Microbial Ecology.

MULLER, E.* , NARAYANASAMY, S.* , Zeimes, M., LACZNY, C. C., LEBRUN, L., HEROLD, M., Hicks, N. D., Gillice, J. D., Schupp, J. M., Keim, P., & WILMES, P. (18 October 2017). First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ. Standards in Genomic Sciences, 12 (64). doi:10.1186/s40793-017-0274-y
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

WAMPACH, L., HEINTZ, A., Hogan, A., MULLER, E., NARAYANASAMY, S., LACZNY, C. C., Hugerth, L., Bindl, L., Bottu, J., Andersson, A., DE BEAUFORT, C., & WILMES, P. (2017). Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life. Frontiers in Microbiology. doi:10.3389/fmicb.2017.00738
Peer Reviewed verified by ORBi

NARAYANASAMY, S., JAROSZ, Y., MULLER, E., BUSCHART, A., HEROLD, M., KAYSEN, A., LACZNY, C. C., Pinel, N., MAY, P., & WILMES, P. (December 2016). IMP: a pipeline for reproducible referenceindependent integrated metagenomic and metatranscriptomic analyses. Genome Biology, 17, 260. doi:10.1186/s13059-016-1116-8
Peer Reviewed verified by ORBi

LACZNY, C. C., MULLER, E., HEINTZ, A., HEROLD, M., LEBRUN, L., Hogan, A., MAY, P., DE BEAUFORT, C., & WILMES, P. (2016). Identification, recovery, and refinement of hitherto undescribed population-level genomes from the human gastrointestinal tract. Frontiers in Microbiology, 7 (884). doi:10.3389/fmicb.2016.00884
Peer Reviewed verified by ORBi

LACZNY, C. C. (2015). VISUALISATION AND BINNING OF METAGENOMIC DATA [Doctoral thesis, Unilu - University of Luxembourg]. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/24369

KAYSEN, A., BUSCHART, A., MAY, P., LACZNY, C. C., NARAYANASAMY, S., Graf, N., Simon, A., Bittenbring, J., KREIS, S., SCHNEIDER, J., & WILMES, P. (June 2015). Dynamic change of host gastrointestinal microbiome and immune status in relation to mucosal barrier effects during chemotherapy and immune ablative intervention in humans [Poster presentation]. The Human Microbiome, Heidelberg, Germany.

BUSCHART, A., MAY, P., LACZNY, C. C., LEBRUN, L., WAMPACH, L., Hogan, A., SCHNEIDER, J., DE BEAUFORT, C., & WILMES, P. (March 2015). Integrated omics analyses of the human gut microbiome in a multiplex family study of type 1 diabetes mellitus [Poster presentation]. 5th International Human Microbiome Congress, Luxembourg-City, Luxembourg.

LACZNY, C. C., Sternal, T., PLUGARU, V., GAWRON, P., ATASHPENDAR, A., MARGOSSIAN, H. H., CORONADO, S., van der Maaten, L., VLASSIS, N., & WILMES, P. (2015). VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data. Microbiome. doi:10.1186/s40168-014-0066-1
Peer Reviewed verified by ORBi

BAUER, E., LACZNY, C. C., MAGNUSDOTTIR, S., WILMES, P., & THIELE, I. (2015). Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires. Microbiome, 3 (55), 1-13. doi:10.1186/s40168-015-0121-6
Peer Reviewed verified by ORBi

ROUME, H., BUSCHART, A., MULLER, E., MAY, P., SATAGOPAM, V., LACZNY, C. C., NARAYANASAMY, S., LEBRUN, L., Hoopmann, M., Schupp, J., Gillece, J., Hicks, N., Engelthaler, D., SAUTER, T., Keim, P., Moritz, R., & WILMES, P. (2015). Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks. Biofilms and Microbiomes, 1 (15007). doi:10.1038/npjbiofilms.2015.7
Peer Reviewed verified by ORBi

MULLER, E., Pinel, N., LACZNY, C. C., Hoopmann, M., NARAYANASAMY, S., LEBRUN, L., ROUME, H., LIN, J., MAY, P., Hicks, N., BUSCHART, A., WAMPACH, L., Liu, C., Price, L., Gillece, J., Guignard, C., Schupp, J., VLASSIS, N., Baliga, ... WILMES, P. (2014). Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage. Nature Communications. doi:10.1038/ncomms6603
Peer Reviewed verified by ORBi

HEINTZ, A., MAY, P., LACZNY, C. C., LEBRUN, L., WAMPACH, L., Hogan, A., SCHNEIDER, J., WILMES, P., & DE BEAUFORT, C. (30 April 2014). Integrated Omic Analyses of the Human Gut Microbiome in a Multiplex Family Study of Type 1 Diabetes Mellitus [Poster presentation]. EMBO|EMBL Symposium: Translating Diabetes.

LACZNY, C. C., Pinel, N., VLASSIS, N., & WILMES, P. (2014). Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction. Scientific Reports. doi:10.1038/srep04516
Peer Reviewed verified by ORBi

LACZNY, C. C., MAY, P., VLASSIS, N., & WILMES, P. (March 2014). Identification of condition-specific microbial populations from human metagenomic data [Poster presentation]. VizBi - Visualizing biological data 2014, Heidelberg, Germany.

LACZNY, C. C., & WILMES, P. (2014). Towards the Identification of Condition-Specific Microbial Populations from Human Metagenomic Data. In A. Keller & E. Meese (Eds.), Nucleic Acids as Molecular Diagnostics (pp. 241-269). Wiley. doi:10.1002/9783527672165.ch11

MULLER, E., Pinel, N., LACZNY, C. C., Hoopmann, M., LEBRUN, L., ROUME, H., MAY, P., Hicks, N., Liu, C., Price, L., Gillece, J., Guignard, C., Schupp, J., VLASSIS, N., Moritz, R., Baliga, N., Keim, P., & WILMES, P. (2014). Community integrated omics links the dominance of a microbial generalist to fine-tuned resource usage [Paper presentation]. 15th International Symposium on Microbial Ecology.

MULLER, E., Pinel, N., LACZNY, C. C., Hoopmann, M., LEBRUN, L., ROUME, H., MAY, P., Hicks, N., Liu, C., Price, L., Gillece, J., Guignard, C., Schupp, J., VLASSIS, N., Moritz, R., Baliga, N., Keim, P., & WILMES, P. (2014). Community integrated omics links the dominance of a microbial generalist to fine-tuned resource usage [Poster presentation]. Phenotypic heterogeneity and sociobiology of bacterial populations.

HEINTZ, A., MAY, P., LEBRUN, L., Ferrand, J., TREZZI, J.-P., Collignon, S., WAMPACH, L., GLAAB, E., LACZNY, C. C., MARTINS CONDE, P., KAYSEN, A., SCHNEIDER, J., HILLER, K., Hogan, A., WILMES, P., & DE BEAUFORT, C. (October 2013). Meta-omic Analyses of the Microbiome in a Family Study of Diabetes Mellitus [Poster presentation]. 2nd International Systems Biomedicine Symposium, Belval, Luxembourg.

DILIMULATI, Y., HEINTZ, A., GHOSAL, A., UPADHYAYA, B. B., FRITZ, J., LACZNY, C. C., MAY, P., MULLER, E., SHAH, P., DESAI, M., ROUME, H., Huang, D., Wang, K., GALAS, D. J., & WILMES, P. (October 2013). The exogenous RNA spectrum in human plasma and the gastrointestinal tract [Poster presentation]. 2nd International Systems Biomedicine Symposium, Belval, Luxembourg.

MULLER, E., ROUME, H., BUSCHART, A., Pinel, N., LACZNY, C. C., SATAGOPAM, V., MAY, P., LEBRUN, L., & WILMES, P. (2013). A model microbial community for Eco-Systems Biology [Poster presentation]. 2nd International Systems Biomedicine Symposium.

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