Lemaigre, S., Gerin, P. A., Adam, G., Klimek, D., Goux, X., HEROLD, M., Frkova, Z., CALUSINSKA, M., & DELFOSSE, P. (02 December 2023). Potential of acetic acid to restore methane production in anaerobic reactors critically intoxicated by ammonia as evidenced by metabolic and microbial monitoring. Biotechnology for biofuels and bioproducts, 16 (1), 188. doi:10.1186/s13068-023-02438-5 Peer reviewed |
MARTINEZ ARBAS, S., BUSI, S. B., TEIXEIRA QUEIRÓS, P., DE NIES, L., HEROLD, M., MAY, P., WILMES, P., MULLER, E., & NARAYANASAMY, S. (2021). Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies. Frontiers in Genetics. doi:10.3389/fgene.2021.666244 Peer Reviewed verified by ORBi |
Buetti-Dinh, A., Galli, V., Bellenberg, S., Ilie, O., HEROLD, M., Christel, S., Boretska, M., Pivkin, I. V., WILMES, P., Sand, W., Vera, M., & Dopson, M. (2019). Deep neural networks outperform human expert's capacity in characterizing bioleaching bacterial biofilm composition. Biotechnology Reports. doi:10.1016/j.btre.2019.e00321 Peer Reviewed verified by ORBi |
HEROLD, M. (2018). Integration of omics data for biotechnology-relevant microbial communities [Doctoral thesis, Unilu - University of Luxembourg]. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/37648 |
MARTINEZ ARBAS, S., Narayanasamy, S., HEROLD, M., LEBRUN, L., Hicks, N. D., Price, L. B., Gillece, J. D., Schupp, J. M., Lam, T., LACZNY, C. C., Ye, Y., Keim, P. S., Muller, E. E. L., MAY, P., & WILMES, P. (19 October 2018). Critical transitions in microbial communities: mobile genetic elements as drivers of the microbial community dynamics within activated sludge of wastewater treatment [Poster presentation]. PhD days 2018, Belval, Luxembourg. |
HEROLD, M., NARAYANASAMY, S., MARTINEZ ARBAS, S., MULLER, E., KLEINE-BORGMANN, A. L., LEBRUN, L., ROUME, H., SHEIK, A., Bessarab, I., Williams, R., Gillece, J., Schupp, J., Keim, P., Jäger, C., Hoopmann, M., Li, S., Tang, H., HEINTZ, A., MAY, P., ... WILMES, P. (August 2018). Integrated time-resolved multi-omics for understanding microbial niche ecology [Poster presentation]. 17th International Symposium on Microbial Ecology, Leipzig, Germany. |
TREZZI, J.-P., HEINTZ, A., MULLER, E., NARAYANASAMY, S., JAROSZ, Y., HEROLD, M., KAYSEN, A., LACZNY, C. C., MAY, P., & WILMES, P. (August 2018). Microbiome-derived Multi-omicBiomarkers for Early-stage Detection and Stratification of Parkinson's Disease [Poster presentation]. 17th International Symposium on Microbial Ecology. |
WAMPACH, L., HEINTZ, A., FRITZ, J., RAMIRO GARCIA, J., HABIER, J., HEROLD, M., NARAYANASAMY, S., KAYSEN, A., Hogan, A., Bindl, L., Bottu, J., HALDER, R., Sjöqvist, C., MAY, P., Andersson, A., DE BEAUFORT, C., & WILMES, P. (2018). Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential. Nature Communications. doi:10.1038/s41467-018-07631-x Peer Reviewed verified by ORBi |
Bellenberg, S., Buetti-Dinh, A., Galli, V., Ilie, O., HEROLD, M., Christel, S., Boretska, M., Pivkin, I. V., WILMES, P., Sand, W., Vera, M., & Dopson, M. (2018). Automated Microscopic Analysis of Metal Sulfide Colonization by Acidophilic Microorganisms. Applied and Environmental Microbiology, 84 (20). doi:10.1128/AEM.01835-18 Peer Reviewed verified by ORBi |
Christel, S., HEROLD, M., Bellenberg, S., Buetti-Dinh, A., El Hajjami, M., Pivkin, I., Sand, W., WILMES, P., Poetsch, A., & Dopson, M. (2018). Weak Iron Oxidation by Sulfobacillus thermosulfidooxidans Maintains a Favorable Redox Potential for Chalcopyrite Bioleaching. Frontiers in Microbiology, 9 (December), 1-12. doi:10.3389/fmicb.2018.03059 Peer Reviewed verified by ORBi |
MULLER, E., Faust, K., Widder, S., HEROLD, M., MARTINEZ ARBAS, S., & WILMES, P. (2018). Using metabolic networks to resolve ecological properties of microbiomes. Current Opinion in Systems Biology. doi:10.1016/j.coisb.2017.12.004 Peer reviewed |
MULLER, E.* , NARAYANASAMY, S.* , Zeimes, M., LACZNY, C. C., LEBRUN, L., HEROLD, M., Hicks, N. D., Gillice, J. D., Schupp, J. M., Keim, P., & WILMES, P. (18 October 2017). First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ. Standards in Genomic Sciences, 12 (64). doi:10.1186/s40793-017-0274-y Peer Reviewed verified by ORBi * These authors have contributed equally to this work. |
MARTINEZ ARBAS, S., Narayanasamy, S., HEROLD, M., MAY, P., & WILMES, P. (21 July 2017). Comparative integrated-omic analyses of phage-host interactions within natural and engineered microbial communities [Poster presentation]. ISCB student council symposium, Prague, Czechia. |
Christel, S.* , HEROLD, M.* , Bellenberg, S., El Hajjami, M., Buetti-Dinh, A., Pivkin, I. V., Sand, W., WILMES, P., Poetsch, A., & Dopson, M. (2017). Multi-omics reveal the lifestyle of the acidophilic, mineral-oxidizing model species Leptospirillum ferriphilum(T). Applied and Environmental Microbiology. doi:10.1128/AEM.02091-17 Peer Reviewed verified by ORBi * These authors have contributed equally to this work. |
NARAYANASAMY, S., JAROSZ, Y., MULLER, E., BUSCHART, A., HEROLD, M., KAYSEN, A., LACZNY, C. C., Pinel, N., MAY, P., & WILMES, P. (December 2016). IMP: a pipeline for reproducible referenceindependent integrated metagenomic and metatranscriptomic analyses. Genome Biology, 17, 260. doi:10.1186/s13059-016-1116-8 Peer Reviewed verified by ORBi |
LACZNY, C. C., MULLER, E., HEINTZ, A., HEROLD, M., LEBRUN, L., Hogan, A., MAY, P., DE BEAUFORT, C., & WILMES, P. (2016). Identification, recovery, and refinement of hitherto undescribed population-level genomes from the human gastrointestinal tract. Frontiers in Microbiology, 7 (884). doi:10.3389/fmicb.2016.00884 Peer Reviewed verified by ORBi |
Christel, S., Dopson, M., Vera, M., Sand, W., HEROLD, M., WILMES, P., Buetti-Dinh, A., Pivkin, I., Poetsch, A., Nygren, J., & Kubista, M. (2015). Systems Biology of Acidophile Biofilms for Efficient Metal Extraction. Advanced Materials Research, 1130, 312-315. doi:10.4028/www.scientific.net/AMR.1130.312 Peer reviewed |