Mokou, M.* , Narayanasamy, S., Stroggilos, R., Balaur, I.-A., Vlahou, A., Mischak, H., & Frantzi, M. (2023). A Drug Repurposing Pipeline Based on Bladder Cancer Integrated Proteotranscriptomics Signatures. In J. Walker (Ed.), Methods in Molecular Biology. Springer. doi:10.1007/978-1-0716-3291-8_4 |
  | Martinez Arbas, S., Busi, S. B., Teixeira Queirós, P., de Nies, L., Herold, M., May, P., Wilmes, P., Muller, E., & Narayanasamy, S. (2021). Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies. Frontiers in Genetics. doi:10.3389/fgene.2021.666244  Peer Reviewed verified by ORBi |
  | Martinez Arbas, S., Narayanasamy, S., Herold, M., Lebrun, L., Hoopmann, M. R., Li, S., Lam, T. J., Kunath, B. J., Hicks, N. D., Liu, C. M., Price, L. B., Laczny, C. C., Gillece, J. D., Schupp, J. M., Keim, P. S., Moritz, R. L., Faust, K., Tang, H., Ye, Y., ... Wilmes, P. (2021). Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics. Nature Microbiology, 6 (1), 123--135. doi:10.1038/s41564-020-00794-8 Peer Reviewed verified by ORBi |
 | Trezzi, J.-P., Heintz, A., Muller, E., Narayanasamy, S., Jarosz, Y., Herold, M., Kaysen, A., Laczny, C. C., May, P., & Wilmes, P. (August 2018). Microbiome-derived Multi-omicBiomarkers for Early-stage Detection and Stratification of Parkinson's Disease [Poster presentation]. 17th International Symposium on Microbial Ecology. |
 | Herold, M., Narayanasamy, S., Martinez Arbas, S., Muller, E., Kleine-Borgmann, A. L., Lebrun, L., Roume, H., Sheik, A., Bessarab, I., Williams, R., Gillece, J., Schupp, J., Keim, P., Jäger, C., Hoopmann, M., Li, S., Tang, H., Heintz, A., May, P., ... Wilmes, P. (August 2018). Integrated time-resolved multi-omics for understanding microbial niche ecology [Poster presentation]. 17th International Symposium on Microbial Ecology, Leipzig, Germany. |
 | Wampach, L., Heintz, A., Fritz, J., Ramiro Garcia, J., Habier, J., Herold, M., Narayanasamy, S., Kaysen, A., Hogan, A., Bindl, L., Bottu, J., Halder, R., Sjöqvist, C., May, P., Andersson, A., de Beaufort, C., & Wilmes, P. (2018). Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential. Nature Communications. doi:10.1038/s41467-018-07631-x Peer Reviewed verified by ORBi |
 | Muller, E.* , Narayanasamy, S.* , Zeimes, M., Laczny, C. C., Lebrun, L., Herold, M., Hicks, N. D., Gillice, J. D., Schupp, J. M., Keim, P., & Wilmes, P. (18 October 2017). First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ. Standards in Genomic Sciences, 12 (64). doi:10.1186/s40793-017-0274-y Peer Reviewed verified by ORBi* These authors have contributed equally to this work. |
 | Wampach, L., Heintz, A., Hogan, A., Muller, E., Narayanasamy, S., Laczny, C. C., Hugerth, L., Bindl, L., Bottu, J., Andersson, A., de Beaufort, C., & Wilmes, P. (2017). Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life. Frontiers in Microbiology. doi:10.3389/fmicb.2017.00738 Peer Reviewed verified by ORBi |
 | Narayanasamy, S. (2017). Development of an integrated omics in silico workflow and its application for studying bacteria-phage interactions in a model microbial community [Doctoral thesis, Unilu - University of Luxembourg]. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/29800 |
 | Kaysen, A., Heintz, A., Muller, E., Narayanasamy, S., Wampach, L., Laczny, C. C., Graf, N., Simon, A., Franke, K., Bittenbring, J., Wilmes, P., & Schneider, J. (2017). Integrated meta-omic analyses of the gastrointestinal tract microbiome in patients undergoing allogeneic hematopoietic stem cell transplantation. Translational Research: the Journal of Laboratory and Clinical Medicine. doi:10.1016/j.trsl.2017.06.008 Peer Reviewed verified by ORBi |
 | Narayanasamy, S., Jarosz, Y., Muller, E., Buschart, A., Herold, M., Kaysen, A., Laczny, C. C., Pinel, N., May, P., & Wilmes, P. (December 2016). IMP: a pipeline for reproducible referenceindependent integrated metagenomic and metatranscriptomic analyses. Genome Biology, 17, 260. doi:10.1186/s13059-016-1116-8 Peer Reviewed verified by ORBi |
 | Alex Namasivayam, A., Morales, A. F., Lacave, A. M. F., Tallam, A., Simovic, B., Alfaro, D. G., Bobbili, D. R., Martin, F., Androsova, G., Shvydchenko, I., Park, J., Calvo, J. V., Hoeng, J., Peitsch, M. C., Racero, M. G. V., Biryukov, M., Talikka, M., Perez, M. B., Rohatgi, N., ... Xiang, Y. (2016). Community-Reviewed Biological Network Models for Toxicology and Drug Discovery Applications. Gene Regulation and Systems Biology, 10, 51-66. doi:10.4137/GRSB.S39076 Peer Reviewed verified by ORBi |
Kaysen, A., Buschart, A., May, P., Laczny, C. C., Narayanasamy, S., Graf, N., Simon, A., Bittenbring, J., Kreis, S., Schneider, J., & Wilmes, P. (June 2015). Dynamic change of host gastrointestinal microbiome and immune status in relation to mucosal barrier effects during chemotherapy and immune ablative intervention in humans [Poster presentation]. The Human Microbiome, Heidelberg, Germany. |
 | Narayanasamy, S., Muller, E., Sheik, A., & Wilmes, P. (2015). Integrated omics for the identification of key functionalities in biological wastewater treatment microbial communities. Microbial Biotechnology. doi:10.1111/1751-7915.12255 Peer Reviewed verified by ORBi |
 | Roume, H., Buschart, A., Muller, E., May, P., Satagopam, V., Laczny, C. C., Narayanasamy, S., Lebrun, L., Hoopmann, M., Schupp, J., Gillece, J., Hicks, N., Engelthaler, D., Sauter, T., Keim, P., Moritz, R., & Wilmes, P. (2015). Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks. Biofilms and Microbiomes, 1 (15007). doi:10.1038/npjbiofilms.2015.7 Peer Reviewed verified by ORBi |
 | Muller, E., Pinel, N., Laczny, C. C., Hoopmann, M., Narayanasamy, S., Lebrun, L., Roume, H., Lin, J., May, P., Hicks, N., Buschart, A., Wampach, L., Liu, C., Price, L., Gillece, J., Guignard, C., Schupp, J., Vlassis, N., Baliga, ... Wilmes, P. (2014). Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage. Nature Communications. doi:10.1038/ncomms6603 Peer Reviewed verified by ORBi |