| Reference : The HSSP database of protein structure sequence alignments |
| Scientific journals : Article | |||
| Life sciences : Biochemistry, biophysics & molecular biology | |||
| http://hdl.handle.net/10993/26557 | |||
| The HSSP database of protein structure sequence alignments | |
| English | |
Schneider, Reinhard  [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >] | |
| Sander, C. [> >] | |
| 1996 | |
| Nucleic Acids Research | |
| Oxford University Press | |
| 24 | |
| 1 | |
| 201-205 | |
| Yes (verified by ORBilu) | |
| 0305-1048 | |
| 1362-4962 | |
| Oxford | |
| United Kingdom | |
| [en] HSSP is a derived database merging structural three dimensional (3-D) and sequence one dimensional (1-D) information. For each protein of known 3-D structure from the Protein Data Bank (PDB), the database has a multiple sequence alignment of all available homologues and a sequence profile characteristic of the family. The list of homologues is the result of a database search in Swissprot using a position-weighted dynamic programming method for sequence profile alignment (MaxHom). The database is updated frequently. The listed homologues are very likely to have the same 3-D structure as the PDB protein to which they have been aligned. As a result, the database is not only a database of aligned sequence families, but also a database of implied secondary and tertiary structures covering 27% of all Swissprotstored sequences. | |
| http://hdl.handle.net/10993/26557 |
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