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KRATOCHVIL Miroslav

University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > Clinical and Translational Informatics

ORCID
0000-0001-7356-4075
Main Referenced Co-authors
SATAGOPAM, Venkata Pardhasaradhi  (4)
SCHNEIDER, Reinhard  (4)
Wilken, St Elmo (4)
Ebenhöh, Oliver (3)
TREFOIS, Christophe  (3)
Main Referenced Keywords
Algorithms (2); Computational Biology/methods (2); Software (2); Applied Mathematics (1); Bacteria/metabolism (1);
Main Referenced Unit & Research Centers
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group) (7)
ULHPC - University of Luxembourg: High Performance Computing (2)
Main Referenced Disciplines
Computer science (5)
Life sciences: Multidisciplinary, general & others (4)
Engineering, computing & technology: Multidisciplinary, general & others (1)
Biochemistry, biophysics & molecular biology (1)
Biotechnology (1)

Publications (total 9)

The most downloaded
109 downloads
KRATOCHVIL, M.* , Hunewald, O.* , HEIRENDT, L., Verissimo, V., Vondrášek, J., SATAGOPAM, V., SCHNEIDER, R., TREFOIS, C., & Ollert, M. (18 November 2020). GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets. GigaScience, 9 (11). doi:10.1093/gigascience/giaa127 https://hdl.handle.net/10993/46296

The most cited

11 citations (OpenAlex)

Wilken, S. E., Besançon, M., KRATOCHVIL, M., Kuate, C. A. F., TREFOIS, C., GU, W., & Ebenhöh, O. (2022). Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models. Metabolic Engineering. doi:10.1016/j.ymben.2022.09.002 https://hdl.handle.net/10993/52296

KRATOCHVIL, M.* , Wilken, S. E.* , Ebenhöh, O., SCHNEIDER, R., & SATAGOPAM, V. (04 February 2025). COBREXA 2: tidy and scalable construction of complex metabolic models. Bioinformatics, 41 (2). doi:10.1093/bioinformatics/btaf056
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Šmelko, A., KRATOCHVIL, M., Barillot, E., & Noël, V. (24 May 2024). Maboss for HPC environments: implementations of the continuous time Boolean model simulator for large CPU clusters and GPU accelerators. BMC Bioinformatics, 25 (1), 199. doi:10.1186/s12859-024-05815-5
Peer Reviewed verified by ORBi

KRATOCHVIL, M., & Wilken, S. E. (2023). FBCModelTests.jl.

Šmelko, A., Kruliš, M., KRATOCHVIL, M., Klepl, J., Mayer, J., & Šimůnek, P. (2023). Astute Approach to Handling Memory Layouts of Regular Data Structures. In Algorithms and Architectures for Parallel Processing. Cham, Switzerland: Springer Nature. doi:10.1007/978-3-031-22677-9_27
Peer reviewed

VEGA MORENO, C. G., KRATOCHVIL, M., SATAGOPAM, V., & SCHNEIDER, R. (2022). Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. In Bioinformatics and Biomedical Engineering (pp. 353--358). Cham, Unknown/unspecified: Springer International Publishing. doi:10.1007/978-3-031-07802-6_30
Peer reviewed

Wilken, S. E., Besançon, M., KRATOCHVIL, M., Kuate, C. A. F., TREFOIS, C., GU, W., & Ebenhöh, O. (2022). Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models. Metabolic Engineering. doi:10.1016/j.ymben.2022.09.002
Peer reviewed

Šmelko, A., KRATOCHVIL, M., Kruliš, M., & Sieger, T. (August 2021). GPU-Accelerated Mahalanobis-Average Hierarchical Clustering Analysis. Lecture Notes in Computer Science, 12820, 580-595. doi:10.1007/978-3-030-85665-6_36
Peer reviewed

KRATOCHVIL, M.* , HEIRENDT, L.* , Wilken, S. E., PUSA, T., Arreckx, S., NORONHA, A., van Aalst, M., SATAGOPAM, V., Ebenhöh, O., SCHNEIDER, R., TREFOIS, C., & GU, W. (2021). COBREXA.jl: constraint-based reconstruction and exascale analysis. Bioinformatics. doi:10.1093/bioinformatics/btab782
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

KRATOCHVIL, M.* , Hunewald, O.* , HEIRENDT, L., Verissimo, V., Vondrášek, J., SATAGOPAM, V., SCHNEIDER, R., TREFOIS, C., & Ollert, M. (18 November 2020). GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets. GigaScience, 9 (11). doi:10.1093/gigascience/giaa127
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

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