![]() ![]() | SCHMIT, K.* , GARCIA, P.* , SCIORTINO, A., AHO, V., Pardo Rodriguez, B., THOMAS, M., GERARDY, J.-J., Bastero Acha, I., HALDER, R., CIALINI, C., HEURTAUX, T., Ostahi, I., BUSI, S. B., Grandmougin, L., LOWNDES, T., Singh, Y., Martens, E. C., MITTELBRONN, M., BUTTINI, M.* , & WILMES, P. (26 September 2023). Fiber deprivation and microbiome-borne curli shift gut bacterial populations and accelerate disease in a mouse model of Parkinson's disease. Cell Reports, 42 (9), 113071. doi:10.1016/j.celrep.2023.113071 ![]() * These authors have contributed equally to this work. |
![]() ![]() | de Nies, L., Galata, V., Martin-Gallausiaux, C., Despotovic, M., Busi, S. B., Snoeck, C. J., Delacour, L., Budagavi, D. P., Laczny, C. C., Habier, J., Lupu, P.-C., Halder, R., Fritz, J. V., Marques, T., Sandt, E., O'Sullivan, M. P., Ghosh, S., Satagopam, V., Consortium, C.-V., ... Wilmes, P. (09 March 2023). Altered infective competence of the human gut microbiome in COVID-19. Microbiome, 11 (1), 46. doi:10.1186/s40168-023-01472-7 ![]() |
![]() ![]() | NOVIKOVA, P., BUSI, S. B., Probst, A. J., MAY, P., & WILMES, P. (2023). Functional prediction of proteins from the human gut archaeome. bioRxiv. doi:10.1101/2023.02.01.526569 |
![]() ![]() | BUSI, S. B., Peter, H., Brandani, J., Kohler, T. J., Fodelianakis, S., Pramateftaki, P., Bourquin, M., Ezzat, L., Michoud, G., Lane, S., WILMES, P., & Battin, T. J. (2023). Cross-domain interactions induce community stability to benthic biofilms in proglacial streams. bioRxiv. doi:10.1101/2023.01.31.526486 |
![]() ![]() | Despotovic, M., de Nies, L., Busi, S. B., & Wilmes, P. (2023). Reservoirs of antimicrobial resistance in the context of One Health. Current Opinion in Microbiology, 73, 102291. doi:10.1016/j.mib.2023.102291 ![]() |
![]() ![]() | de Nies, L., Busi, S. B., Kunath, B., May, P., & Wilmes, P. (16 September 2022). Mobilome-driven segregation of the resistome in biological wastewater treatment. eLife, 11, 81196. doi:10.7554/eLife.81196 ![]() |
![]() ![]() | McAdams, Z. L., BUSI, S. B., Gustafson, K. L., Bivens, N., Franklin, C. L., WILMES, P., & Ericsson, A. C. (2022). Multi-omics analysis of mouse fecal microbiome reveals supplier-dependent functional differences and novel metagenome-assembled genomes. bioRxiv. doi:10.1101/2022.09.12.507288 |
![]() ![]() | Bourquin, M., BUSI, S. B., Fodelianakis, S., Peter, H., Washburne, A., Kohler, T. J., Ezzat, L., Michoud, G., WILMES, P., & Battin, T. J. (02 June 2022). The microbiome of cryospheric ecosystems. Nature Communications, 13 (1), 3087. doi:10.1038/s41467-022-30816-4 ![]() |
![]() ![]() | Kohler, T. J., Fodelianakis, S., Michoud, G., Ezzat, L., Bourquin, M., Peter, H., BUSI, S. B., Pramateftaki, P., Deluigi, N., Styllas, M., Tolosano, M., de Staercke, V., Schön, M., Brandani, J., Marasco, R., Daffonchio, D., WILMES, P., & Battin, T. J. (June 2022). Glacier shrinkage will accelerate downstream decomposition of organic matter and alters microbiome structure and function. Global Change Biology, 28 (12), 3846 - 3859. doi:10.1111/gcb.16169 ![]() |
![]() ![]() | de Nies, L., Busi, S. B., Tsenkova, M., Halder, R., Letellier, E., & Wilmes, P. (2022). Evolution of the murine gut resistome following broad-spectrum antibiotic treatment. Nature Communications, 13 (1), 2296. doi:10.1038/s41467-022-29919-9 ![]() |
![]() ![]() | de Saedeleer, B., Malabirade, A., Ramiro Garcia, J., Habier, J., Trezzi, J.-P., Peters, S., Daujeumont, A., Halder, R., Jäger, C., Busi, S. B., May, P., Oertel, W., Mollenhauer, B., Laczny, C. C., Hettich, R., & Wilmes, P. (2021). Systematic characterization of human gut microbiome-secreted molecules by integrated multi-omics. ISME Communications. doi:10.1038/s43705-021-00078-0 ![]() |
![]() ![]() | Fodelianakis, S., Busi, S. B., Wilmes, P., Washburne, A., Bourquin, M., Pramateftaki, P., Kohler, T., Styllas, M., Tolosano, M., de Staercke, V., Schon, M., Brandani, J., Peter, H., & Battin, T. (2021). Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome. ISME Journal. doi:10.1038/s41396-021-01106-6 ![]() |
![]() ![]() | Galata, V., Busi, S. B., Kunath, B., de Nies, L., Calusinska, M., Halder, R., May, P., Wilmes, P., & Laczny, C. C. (2021). Functional meta-omics provide critical insights into long- and short-read assemblies. Briefings in Bioinformatics. doi:10.1093/bib/bbab330 ![]() |
![]() ![]() | Martinez Arbas, S., Busi, S. B., Teixeira Queirós, P., de Nies, L., Herold, M., May, P., Wilmes, P., Muller, E., & Narayanasamy, S. (2021). Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies. Frontiers in Genetics. doi:10.3389/fgene.2021.666244 ![]() |
![]() ![]() | Busi, S. B.* , de Nies, L.* , Habier, J., Wampach, L., Heintz-Buschart, A., Fritz, J., Halder, R., May, P., de Beaufort, C., & Wilmes, P. (2021). Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life. ISME Communications. doi:10.1038/s43705-021-00003-5 ![]() * These authors have contributed equally to this work. |
![]() ![]() | de Nies, L., Lopes, S., Busi, S. B., Galata, V., Heintz-Buschart, A., Laczny, C. C., May, P., & Wilmes, P. (2021). PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data. Microbiome. doi:10.1186/s40168-020-00993-9 ![]() |
Busi, S. B., de Nies, L., Pramateftaki, P., Bourquin, M., Ezzat, L. I., Kohler, T. J., Fodelianakis, S., Michoud, G., Peter, H., Styllas, M., Tolosano, M., De Staercke, V., Schön, M., Galata, V., Wilmes, P., & Battin, T. (2021). Glacier-fed stream biofilms harbour diverse resistomes and biosynthetic gene clusters 2021.11.18.469141. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/48975. doi:10.1101/2021.11.18.469141 |
Busi, S. B., Bourquin, M., Fodelianakis, S., Michoud, G., Kohler, T. J., Peter, H., Pramateftaki, P., Styllas, M., Tolosano, M., De Staercke, V., Schön, M., de Nies, L., Marasco, R., Daffonchio, D., Ezzat, L. I., Wilmes, P., & Battin, T. J. (2021). Genomic and metabolic adaptations of biofilms to ecological windows of opportunities in glacier-fed streams 2021.10.07.463499. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/48976. doi:10.1101/2021.10.07.463499 |
de Nies, L., Busi, S. B., Kunath, B. J., May, P., & Wilmes, P. (2021). Mobilome-driven segregation of the resistome in biological wastewater treatment 2021.11.15.468621. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/48974. doi:10.1101/2021.11.15.468621 |
![]() ![]() | Fodelianakis, S., Washburne, A. D., Bourquin, M., Pramateftaki, P., Kohler, T. J., Styllas, M., Tolosano, M., De Staercke, V., Schön, M., BUSI, S. B., Brandani, J., WILMES, P., Peter, H., & Battin, T. J. (2020). Homogeneous selection promotes microdiversity in the glacier-fed stream microbiome. bioRxiv. doi:10.1101/2020.12.03.409391 |
![]() ![]() | Kohler, T. J., Peter, H., Fodelianakis, S., Pramateftaki, P., Styllas, M., Tolosano, M., de Staercke, V., Schön, M., Busi, S. B., Wilmes, P., Washburne, A., & Battin, T. J. (19 November 2020). Patterns and Drivers of Extracellular Enzyme Activity in New Zealand Glacier-Fed Streams. Frontiers in Microbiology, 11, 2922. doi:10.3389/fmicb.2020.591465 ![]() |
![]() ![]() | Busi, S. B.* , Pramateftaki, P.* , Brandani, J., Fodelianakis, S., Peter, H., Halder, R., Wilmes, P., & Battin, T. (2020). Optimised biomolecular extraction for metagenomic analysis of microbial biofilms from high-mountain streams. PeerJ. doi:10.7717/peerj.9973 ![]() * These authors have contributed equally to this work. |