![]() ![]() | TALAVERA ANDÚJAR, B., CARDOSO PEREIRA, S. L., BUSI, S. B., Usnich, T., Borsche, M., Ertan, S., Bauer, P., Rolfs, A., HEZZAZ, S., GHELFI, J., Brüggemann, N., ANTONY, P., WILMES, P., Klein, C., GRÜNEWALD, A., & SCHYMANSKI, E. (December 2024). Exploring environmental modifiers of LRRK2-associated Parkinson's disease penetrance: An exposomics and metagenomics pilot study on household dust. Environment International, 194, 109151. doi:10.1016/j.envint.2024.109151 ![]() |
![]() ![]() | SCHMIT, K.* , GARCIA, P.* , SCIORTINO, A., AHO, V., Pardo Rodriguez, B., THOMAS, M., GERARDY, J.-J., Bastero Acha, I., HALDER, R., CIALINI, C., HEURTAUX, T., Ostahi, I., BUSI, S. B., Grandmougin, L., LOWNDES, T., Singh, Y., Martens, E. C., MITTELBRONN, M., BUTTINI, M.* , & WILMES, P. (26 September 2023). Fiber deprivation and microbiome-borne curli shift gut bacterial populations and accelerate disease in a mouse model of Parkinson's disease. Cell Reports, 42 (9), 113071. doi:10.1016/j.celrep.2023.113071 ![]() * These authors have contributed equally to this work. |
![]() ![]() | de Nies, L., Galata, V., Martin-Gallausiaux, C., DESPOTOVIC, M., BUSI, S. B., Snoeck, C. J., DELACOUR, L., Budagavi, D. P., LACZNY, C. C., HABIER, J., Lupu, P.-C., HALDER, R., Fritz, J. V., MARQUES, T., Sandt, E., O'Sullivan, M. P., GHOSH, S., SATAGOPAM, V., Consortium, C.-V., ... WILMES, P. (09 March 2023). Altered infective competence of the human gut microbiome in COVID-19. Microbiome, 11 (1), 46. doi:10.1186/s40168-023-01472-7 ![]() |
![]() ![]() | NOVIKOVA, P., BUSI, S. B., Probst, A. J., MAY, P., & WILMES, P. (2023). Functional prediction of proteins from the human gut archaeome. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/58071. doi:10.1101/2023.02.01.526569 |
![]() ![]() | BUSI, S. B., Peter, H., Brandani, J., Kohler, T. J., Fodelianakis, S., Pramateftaki, P., Bourquin, M., Ezzat, L., Michoud, G., Lane, S., WILMES, P., & Battin, T. J. (2023). Cross-domain interactions induce community stability to benthic biofilms in proglacial streams. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/58067. doi:10.1101/2023.01.31.526486 |
![]() ![]() | DESPOTOVIC, M., de Nies, L., BUSI, S. B., & WILMES, P. (2023). Reservoirs of antimicrobial resistance in the context of One Health. Current Opinion in Microbiology, 73, 102291. doi:10.1016/j.mib.2023.102291 ![]() |
![]() ![]() | DE NIES, L., BUSI, S. B., KUNATH, B., MAY, P., & WILMES, P. (16 September 2022). Mobilome-driven segregation of the resistome in biological wastewater treatment. eLife, 11, 81196. doi:10.7554/eLife.81196 ![]() |
![]() ![]() | McAdams, Z. L., BUSI, S. B., Gustafson, K. L., Bivens, N., Franklin, C. L., WILMES, P., & Ericsson, A. C. (2022). Multi-omics analysis of mouse fecal microbiome reveals supplier-dependent functional differences and novel metagenome-assembled genomes. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/58063. doi:10.1101/2022.09.12.507288 |
![]() ![]() | Bourquin, M., BUSI, S. B., Fodelianakis, S., Peter, H., Washburne, A., Kohler, T. J., Ezzat, L., Michoud, G., WILMES, P., & Battin, T. J. (02 June 2022). The microbiome of cryospheric ecosystems. Nature Communications, 13 (1), 3087. doi:10.1038/s41467-022-30816-4 ![]() |
![]() ![]() | Kohler, T. J., Fodelianakis, S., Michoud, G., Ezzat, L., Bourquin, M., Peter, H., BUSI, S. B., Pramateftaki, P., Deluigi, N., Styllas, M., Tolosano, M., de Staercke, V., Schön, M., Brandani, J., Marasco, R., Daffonchio, D., WILMES, P., & Battin, T. J. (June 2022). Glacier shrinkage will accelerate downstream decomposition of organic matter and alters microbiome structure and function. Global Change Biology, 28 (12), 3846 - 3859. doi:10.1111/gcb.16169 ![]() |
![]() ![]() | DE NIES, L., BUSI, S. B., TSENKOVA, M., HALDER, R., LETELLIER, E., & WILMES, P. (2022). Evolution of the murine gut resistome following broad-spectrum antibiotic treatment. Nature Communications, 13 (1), 2296. doi:10.1038/s41467-022-29919-9 ![]() |
![]() ![]() | DE SAEDELEER, B., MALABIRADE, A., RAMIRO GARCIA, J., HABIER, J., TREZZI, J.-P., Peters, S., DAUJEUMONT, A., HALDER, R., Jäger, C., BUSI, S. B., MAY, P., Oertel, W., Mollenhauer, B., LACZNY, C. C., Hettich, R., & WILMES, P. (2021). Systematic characterization of human gut microbiome-secreted molecules by integrated multi-omics. ISME Communications. doi:10.1038/s43705-021-00078-0 ![]() |
![]() ![]() | Fodelianakis, S., BUSI, S. B., WILMES, P., Washburne, A., Bourquin, M., Pramateftaki, P., Kohler, T., Styllas, M., Tolosano, M., de Staercke, V., Schon, M., Brandani, J., Peter, H., & Battin, T. (2021). Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome. ISME Journal. doi:10.1038/s41396-021-01106-6 ![]() |
![]() ![]() | GALATA, V., BUSI, S. B., KUNATH, B., DE NIES, L., CALUSINSKA, M., HALDER, R., MAY, P., WILMES, P., & LACZNY, C. C. (2021). Functional meta-omics provide critical insights into long- and short-read assemblies. Briefings in Bioinformatics. doi:10.1093/bib/bbab330 ![]() |
![]() ![]() | MARTINEZ ARBAS, S., BUSI, S. B., TEIXEIRA QUEIRÓS, P., DE NIES, L., HEROLD, M., MAY, P., WILMES, P., MULLER, E., & NARAYANASAMY, S. (2021). Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies. Frontiers in Genetics. doi:10.3389/fgene.2021.666244 ![]() |
![]() ![]() | BUSI, S. B.* , DE NIES, L.* , HABIER, J., Wampach, L., Heintz-Buschart, A., FRITZ, J., HALDER, R., MAY, P., de Beaufort, C., & WILMES, P. (2021). Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life. ISME Communications. doi:10.1038/s43705-021-00003-5 ![]() * These authors have contributed equally to this work. |
![]() ![]() | DE NIES, L., Lopes, S., BUSI, S. B., GALATA, V., Heintz-Buschart, A., LACZNY, C. C., MAY, P., & WILMES, P. (2021). PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data. Microbiome. doi:10.1186/s40168-020-00993-9 ![]() |
BUSI, S. B., DE NIES, L., Pramateftaki, P., Bourquin, M., Ezzat, L. I., Kohler, T. J., Fodelianakis, S., Michoud, G., Peter, H., Styllas, M., Tolosano, M., De Staercke, V., Schön, M., GALATA, V., WILMES, P., & Battin, T. (2021). Glacier-fed stream biofilms harbour diverse resistomes and biosynthetic gene clusters 2021.11.18.469141. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/48975. doi:10.1101/2021.11.18.469141 |
BUSI, S. B., Bourquin, M., Fodelianakis, S., Michoud, G., Kohler, T. J., Peter, H., Pramateftaki, P., Styllas, M., Tolosano, M., De Staercke, V., Schön, M., DE NIES, L., Marasco, R., Daffonchio, D., Ezzat, L. I., WILMES, P., & Battin, T. J. (2021). Genomic and metabolic adaptations of biofilms to ecological windows of opportunities in glacier-fed streams 2021.10.07.463499. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/48976. doi:10.1101/2021.10.07.463499 |
DE NIES, L., BUSI, S. B., Kunath, B. J., MAY, P., & WILMES, P. (2021). Mobilome-driven segregation of the resistome in biological wastewater treatment 2021.11.15.468621. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/48974. doi:10.1101/2021.11.15.468621 |
![]() ![]() | Fodelianakis, S., Washburne, A. D., Bourquin, M., Pramateftaki, P., Kohler, T. J., Styllas, M., Tolosano, M., De Staercke, V., Schön, M., BUSI, S. B., Brandani, J., WILMES, P., Peter, H., & Battin, T. J. (2020). Homogeneous selection promotes microdiversity in the glacier-fed stream microbiome. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/58066. doi:10.1101/2020.12.03.409391 |
![]() ![]() | Kohler, T. J., Peter, H., Fodelianakis, S., Pramateftaki, P., Styllas, M., Tolosano, M., de Staercke, V., Schön, M., BUSI, S. B., WILMES, P., Washburne, A., & Battin, T. J. (19 November 2020). Patterns and Drivers of Extracellular Enzyme Activity in New Zealand Glacier-Fed Streams. Frontiers in Microbiology, 11, 2922. doi:10.3389/fmicb.2020.591465 ![]() |
![]() ![]() | BUSI, S. B.* , Pramateftaki, P.* , Brandani, J., Fodelianakis, S., Peter, H., HALDER, R., WILMES, P., & Battin, T. (2020). Optimised biomolecular extraction for metagenomic analysis of microbial biofilms from high-mountain streams. PeerJ. doi:10.7717/peerj.9973 ![]() * These authors have contributed equally to this work. |