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HOKSZA David

Main Referenced Co-authors
MAY, Patrick  (4)
OSTASZEWSKI, Marek  (4)
Cottrell, Jeffrey R. (3)
Daly, Mark J. (3)
GAWRON, Piotr  (3)
Main Referenced Keywords
Missense variants (2); Protein structure (2); Variant classification (2); 3D mutational hotspot (1); Bioinformatics (1);
Main Referenced Unit & Research Centers
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group) (10)
Main Referenced Disciplines
Computer science (7)
Genetics & genetic processes (4)
Biochemistry, biophysics & molecular biology (1)

Publications (total 11)

The most downloaded
180 downloads
Jendele, L., Krivak, R., Skoda, P., Novotny, M., & Hoksza, D. (2019). PrankWeb: a web server for ligand binding site prediction and visualization. Nucleic Acids Research, 47 (W1), 345-W349. doi:10.1093/nar/gkz424 https://hdl.handle.net/10993/40648

The most cited

192 citations (Scopus®)

Jendele, L., Krivak, R., Skoda, P., Novotny, M., & Hoksza, D. (2019). PrankWeb: a web server for ligand binding site prediction and visualization. Nucleic Acids Research, 47 (W1), 345-W349. doi:10.1093/nar/gkz424 https://hdl.handle.net/10993/40648

Kwon, S., Safer, J., Nguyen, D. T., HOKSZA, D., MAY, P., Arbesfeld, J. A., Rubin, A. F., Campbell, A. J., Burgin, A., & Iqbal, S. (2024). Genomics 2 Proteins portal: A resource and discovery tool for linking genetic screening outputs to protein sequences and structures. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/59397. doi:10.1101/2024.01.02.573913

iqbal, S., Perez-Palma, E., Jespersen, J. B., May, P., Hoksza, D., Heyne, H. O., Ahmed, S. S., Rifat, Z. T., Rahman, M. S., Lage, K., Palotie, A., Cottrell, J. R., Wagner, F. F., Daly, M. J., Camphell, A. J., & Lal, D. (2020). Comprehensive characterization of amino acidpositions in protein structures reveals moleculareffect of missense variants. Proceedings of the National Academy of Sciences of the United States of America. doi:10.1073/pnas.2002660117
Peer Reviewed verified by ORBi

Iqbal, S., Hoksza, D., Pérez-Palma, E., May, P., Jespersen, J. B., Ahmed, S. S., Rifat, Z. T., Heyne, H. H., Rahman, M. S., Cottrell, J. R., Wagner, F. F., Daly, M. J., Campbell, A. J., & Lal, D. (2020). MISCAST: MIssense variant to protein StruCture Analysis web SuiTe. Nucleic Acids Research. doi:10.1093/nar/gkaa361
Peer Reviewed verified by ORBi

Iqbal, S., Jespersen, J. B., Perez-Palma, E., May, P., Hoksza, D., Heyne, H. O., Ahmed, S. S., Rifat, Z. T., Rahman, M. S., Lage, K., Palotie, A., Cottrell, J. R., Wagner, F. F., Daly, M. J., Campbell, A. C., & Lal, D. (2019). Insights into protein structural, physicochemical, and functional consequences of missense variants in 1,330 disease-associated human genes 693259. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/39863. doi:10.1101/693259

Hoksza, D., Gawron, P., Ostaszewski, M., Hausenauer, J., & Schneider, R. (2019). Closing the gap between formats for storing layout information in systems biology. Briefings in Bioinformatics. doi:10.1093/bib/bbz067
Peer Reviewed verified by ORBi

Jendele, L., Krivak, R., Skoda, P., Novotny, M., & Hoksza, D. (2019). PrankWeb: a web server for ligand binding site prediction and visualization. Nucleic Acids Research, 47 (W1), 345-W349. doi:10.1093/nar/gkz424
Peer Reviewed verified by ORBi

Nielsen, S. S., Ostaszewski, M., McGee, F., Hoksza, D., & Zorzan, S. (2019). Machine Learning to Support the Presentation of Complex Pathway Graphs. IEEE/ACM Transactions on Computational Biology and Bioinformatics. doi:10.1109/TCBB.2019.2938501
Peer Reviewed verified by ORBi

Hoksza, D., Gawron, P., Ostaszewski, M., Smula, E., & Schneider, R. (2019). MINERVA API and plugins: opening molecular network analysis and visualization to the community. Bioinformatics. doi:10.1093/bioinformatics/btz286
Peer reviewed

Jelinek, J., Hoksza, D., Hajic, J., Pesek, J., Drozen, J., Hladik, T., Klimpera, M., Vohradsky, J., & Panek, J. (2019). rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots. Database: The Journal of Biological Databases and Curation, 2019. doi:10.1093/database/baz047
Peer Reviewed verified by ORBi

Varadi, M., Berrisford, J., Deshpande, M., Nair, S. S., Gutmanas, A., Armstrong, D., Pravda, L., Al-Lazikani, B., Anyango, S., Barton, G. J., Berka, K., Blundell, T., Borkakoti, N., Dana, J., Das, S., Dey, S., Micco, P. D., Fraternali, F., Gibson, T., ... Velankar, S. (2019). PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Research. doi:10.1093/nar/gkz853
Peer Reviewed verified by ORBi

Hoksza, D., Gawron, P., Ostaszewski, M., & Schneider, R. (2018). MolArt: a molecular structure annotation and visualization tool. Bioinformatics. doi:10.1093/bioinformatics/bty489
Peer reviewed

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