  | Touahri, Y.* , Hanna, J., Tachibana, N., OKAWA, S., Liu, H., David, L. A., Olender, T., Vasan, L., Pak, A., Mehta, D. N., Chinchalongporn, V., Balakrishnan, A., Cantrup, R., Dixit, R., Mattar, P., Saleh, F., Ilnytskyy, Y., Murshed, M., Mains, P. E., ... Schuurmans, C.*. (27 March 2024). Pten regulates endocytic trafficking of cell adhesion and Wnt signaling molecules to pattern the retina. Cell Reports, 43 (4), 114005. doi:10.1016/j.celrep.2024.114005  Peer Reviewed verified by ORBi |
 | BARVAUX, S.* , OKAWA, S., & DEL SOL MESA, A.*. (2024). SinCMat: A single-cell-based method for predicting functional maturation transcription factors. Stem Cell Reports. doi:10.1016/j.stemcr.2023.12.006 Peer Reviewed verified by ORBi |
 | Ribeiro, M., Okawa, S., & Del Sol Mesa, A. (2020). TransSynW: A single‐cell RNA‐sequencing based web application to guide cell conversion experiments. Stem Cells Translational Medicine. doi:10.1002/sctm.20-0227 Peer Reviewed verified by ORBi |
  | del Sol Mesa, A., Okawa, S., & Ravichandran, S. (2019). Computational Strategies for Niche-Dependent Cell Conversion to Assist Stem Cell Therapy. Trends in Biotechnology. Peer reviewed |
 | Zaffaroni, G., Okawa, S., Morales-Ruiz, M., & del Sol Mesa, A. (2019). An integrative method to predict signallingperturbations for cellular transitions. Nucleic Acids Research. doi:10.1093/nar/gkz232 Peer Reviewed verified by ORBi |
 | Okawa, S., & del Sol Mesa, A. (2019). A general computational approach to predicting synergistic transcriptional cores that determine cell subpopulation identities. Nucleic Acids Research. doi:10.1093/nar/gkz147 Peer Reviewed verified by ORBi |
 | Medelnik, J.-P., Roensch, K., Okawa, S., del Sol Mesa, A., Chara, O., Mchedlishvili, L., & Tanaka, E. M. (2018). Signaling-Dependent Control of Apical Membrane Size and Self-Renewal in Rosette-Stage Human Neuroepithelial Stem Cells. Stem Cell Reports. doi:10.1016/j.stemcr.2018.04.018 Peer Reviewed verified by ORBi |
 | Hartmann, A., Okawa, S., Zaffaroni, G., & del Sol Mesa, A. (2018). SeesawPred: A Web Application for Predicting Cell-fate Determinants in Cell Differentiation. Scientific Reports. doi:10.1038/s41598-018-31688-9 Peer Reviewed verified by ORBi |
 | Okawa, S., Saltó, C., Ravichandran, S., Yang, S., Toledo, E. M., Arenas, E., & del Sol Mesa, A. (2018). Transcriptional synergy as an emergent property defining cell subpopulation identity enables population shift. Nature Communications. doi:10.1038/s41467-018-05016-8 Peer Reviewed verified by ORBi |
 | Nicklas, S., Hillje, A.-L., Okawa, S., Rudolph, I.-M., Collmann, F. M., Van Wüllen, T. M., del Sol Mesa, A., & Schwamborn, J. C. (2018). A complex of the ubiquitin ligase TRIM32 and the deubiquitinase USP7 balances the level of c-Myc ubiquitination and thereby determines neural stem cell fate specification. Cell Death and Differentiation. doi:10.1038/s41418-018-0144-1 Peer reviewed |
 | Frejo, L., Requena, T., Okawa, S., Gallego-Martinez, A., Martinez-Bueno, M., Aran, I., Batuecas-Caletrio, A., Benitez-Rosario, J., Espinosa-Sanchez, J. M., Fraile-Rodrigo, J. J., García-Arumi, A. M., González-Aguado, R., Marques, P., Martin-Sanz, E., Perez-Fernandez, N., Pérez-Vázquez, P., Perez-Garrigues, H., Santos-Perez, S., Soto-Varela, A., ... Lopez-Escamez, J. A. (2017). Regulation of Fn14 Receptor and NF-κB Underlies Inflammation in Meniere’s Disease. Frontiers in Immunology. doi:10.3389/fimmu.2017.01739 Peer Reviewed verified by ORBi |
 | Ravichandran, S., Okawa, S., Martinez Arbas, S., & del Sol Mesa, A. (2016). A systems biology approach to identify niche determinants of cellular phenotypes. Stem Cell Research. doi:10.1016/j.scr.2016.09.006 Peer reviewed |
 | Okawa, S., Nicklas, S., Zickenrott, S., Schwamborn, J. C., & del Sol Mesa, A. (2016). A generalized gene regulatory network model of stem cell differentiation for predicting lineage specifiers. Stem Cell Reports. doi:10.1016/j.stemcr.2016.07.014 Peer Reviewed verified by ORBi |
 | Okawa, S., & del Sol Mesa, A. (2015). A computational strategy for predicting lineage specifiers in stem cell subpopulations. Stem Cell Research. doi:10.1016/j.scr.2015.08.006 Peer reviewed |
 | W. van den Berg, C., Okawa, S., M. Chuva de Sousa Lopes, S., van Iperen, L., Passier, R., R. Braam, S., G. Tertoolen, L., del Sol, A., P. Davis, R., & L. Mummery, C. (2015). Transcriptome of human foetal heart compared with cardiomyocytes from pluripotent stem cells. Development. doi:10.1242/dev.123810 Peer reviewed |
 | Nicklas, S., Okawa, S., Hillje, A.-L., Gonzalez Cano, L., del Sol Mesa, A., & Schwamborn, J. C. (2015). The RNA helicase DDX6 regulates cell-fate specification in neural stem cells via miRNAs. Nucleic Acids Research. doi:10.1093/nar/gkv138 Peer Reviewed verified by ORBi |
 | Okawa, S., Espinosa Angarica, V., Lemischka, I., Moore, K., & del Sol Mesa, A. (2015). A differential network analysis approach for lineage specifier prediction in stem cell subpopulations. NPJ Systems Biology and Applications. doi:10.1038/npjsba.2015.12 Peer reviewed |
 | Ertaylan, G., Okawa, S., Schwamborn, J. C., & del Sol Mesa, A. (2014). Gene regulatory network analysis reveals differences in site-specific cell fate determination in mammalian brain. Frontiers in Cellular Neuroscience. doi:10.3389/fncel.2014.00437 Peer Reviewed verified by ORBi |