Profil

DEL SOL MESA Antonio

University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > Computational Biology

Main Referenced Co-authors
OKAWA, Satoshi  (17)
CRESPO, Isaac  (8)
Nussinov, Ruth (7)
SCHWAMBORN, Jens Christian  (7)
RAVICHANDRAN, Srikanth  (6)
Main Referenced Keywords
Models, Molecular (8); Protein Binding (6); Amino Acid Sequence (5); Allosteric Regulation (4); Animals (4);
Main Referenced Unit & Research Centers
Luxembourg Centre for Systems Biomedicine (LCSB): Computational Biology (Del Sol Group) (12)
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group) (5)
Luxembourg Centre for Systems Biomedicine (LCSB): Experimental Neurobiology (Balling Group) (4)
Luxembourg Centre for Systems Biomedicine (LCSB): Biomedical Data Science (Glaab Group) (3)
Luxembourg Centre for Systems Biomedicine (LCSB): Developmental and Cellular Biology (Schwamborn Group) (3)
Main Referenced Disciplines
Life sciences: Multidisciplinary, general & others (83)
Biochemistry, biophysics & molecular biology (17)
Physics (14)
Genetics & genetic processes (6)
Biotechnology (5)

Publications (total 128)

The most downloaded
2012 downloads
Zaffaroni, G., Okawa, S., Morales-Ruiz, M., & del Sol Mesa, A. (2019). An integrative method to predict signallingperturbations for cellular transitions. Nucleic Acids Research. doi:10.1093/nar/gkz232 https://hdl.handle.net/10993/39285

The most cited

373 citations (Scopus®)

Tsai, C.-J., del Sol Mesa, A., & Nussinov, R. (2008). Allostery: absence of a change in shape does not imply that allostery is not at play. Journal of Molecular Biology, 378 (1), 1-11. doi:10.1016/j.jmb.2008.02.034 https://hdl.handle.net/10993/17841

Touahri, Y.* , Hanna, J., Tachibana, N., OKAWA, S., Liu, H., David, L. A., Olender, T., Vasan, L., Pak, A., Mehta, D. N., Chinchalongporn, V., Balakrishnan, A., Cantrup, R., Dixit, R., Mattar, P., Saleh, F., Ilnytskyy, Y., Murshed, M., Mains, P. E., ... Schuurmans, C.*. (27 March 2024). Pten regulates endocytic trafficking of cell adhesion and Wnt signaling molecules to pattern the retina. Cell Reports, 43 (4), 114005. doi:10.1016/j.celrep.2024.114005
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BARVAUX, S.* , OKAWA, S., & DEL SOL MESA, A.*. (2024). SinCMat: A single-cell-based method for predicting functional maturation transcription factors. Stem Cell Reports. doi:10.1016/j.stemcr.2023.12.006
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Del Sol Mesa, A. (2023). Epi-Impute: Single-Cell RNA-seq Imputation via Integration with Single-Cell ATAC-seq. International Journal of Molecular Sciences.
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Del Sol Mesa, A. (2023). Transcriptional and Chromatin Accessibility Profiling of Neural Stem Cells Differentiating into Astrocytes Reveal Dynamic Signatures Affected under Inflammatory Conditions. Cells.
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Del Sol Mesa, A. (2023). Measuring biological age using a functionally interpretable multi-tissue RNA clock. Aging Cell.
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Del Sol Mesa, A. (2022). Senescence atlas reveals an aged-like inflamed niche that blunts muscle regeneration. Nature. doi:10.1038/s41586-022-05535-x
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Del Sol Mesa, A. (2022). A single cell-based computational platform to identify chemical compounds targeting desired sets of transcription factors for cellular conversion. Stem Cell Reports.
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Del Sol Mesa, A. (2022). ChemPert: mapping between chemical perturbation and transcriptional response for non-cancer cells. Nucleic Acids Research.
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Del Sol Mesa, A. (2022). Neural network learning defines glioblastoma features to be of neural crest perivascular or radial glia lineages. Science Advances.
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Del Sol Mesa, A. (2022). Combinatorial analysis reveals highly coordinated early-stage immune reactions that predict later antiviral immunity in mild COVID-19 patients. Cell Reports Medicine.
Peer reviewed

Del Sol Mesa, A. (2022). Computational Methods to Identify Cell-Fate Determinants, Identity Transcription Factors, and Niche-Induced Signaling Pathways for Stem Cell Research. In Methods in Molecular Biology. Springer. doi:10.1007/978-1-0716-2193-6_4
Peer reviewed

Del Sol Mesa, A. (January 2022). Fostering experimental and computational synergy to modulate hyperinflammation. Trends in Immunology, 43 (1).
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Del Sol Mesa, A. (2021). A Catalogus Immune Muris of the mouse immune responses to diverse pathogens. Cell Death and Disease.
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Del Sol Mesa, A. (2021). Proneural genes define ground-state rules to regulate neurogenic patterning and cortical folding. Neuron.
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Del Sol Mesa, A. (2021). A 3D system to model human pancreas development and its reference single-cell transcriptome atlas identify signaling pathways required for progenitor expansion. Nature Communications.
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Del Sol Mesa, A. (2021). A computer-guided design tool to increase the efficiency of cellular conversions. Nature Communications.
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Del Sol Mesa, A. (2021). Altered sphingolipid function in Alzheimer's disease; a gene regulatory network approach. Neurobiology of Aging.
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Del Sol Mesa, A. (2021). Computational modelling of stem cell‐niche interactions facilitates discovery of strategies to enhance tissue regeneration and counteract aging. FEBS Journal.
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Del Sol Mesa, A. (2021). Leveraging systems biology for predicting modulators of inflammation in patients with COVID-19. Science Advances.
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Del Sol Mesa, A. (2021). Computational Stem Cell Biology: Open Questions and Guiding Principles. Cell Stem Cell.
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Del Sol Mesa, A. (2020). FunRes: resolving tissue-specific functional cell states based on a cell-cell communication network model. Briefings in Bioinformatics.
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Del Sol Mesa, A. (2020). FoxO maintains a genuine muscle stem-cell quiescent state until geriatric age. Nature Cell Biology. doi:10.1038/s41556-020-00593-7
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Del Sol Mesa, A. (2020). TransSynW: A single‐cell RNA‐sequencing based web application to guide cell conversion experiments. Stem Cells Translational Medicine.
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Ribeiro, M., Okawa, S., & Del Sol Mesa, A. (2020). TransSynW: A single‐cell RNA‐sequencing based web application to guide cell conversion experiments. Stem Cells Translational Medicine. doi:10.1002/sctm.20-0227
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Del Sol Mesa, A. (2020). The Importance of Computational Modeling in Stem Cell Research. Trends in Biotechnology.
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Del Sol Mesa, A. (2020). Multiomics data integration unveils core transcriptional regulatory networks governing cell-type identity. NPJ systems biology and applications.
Peer reviewed

del Sol Mesa, A. (2020). HuR/ELAVL1 drives malignant peripheral nerve sheath tumour growth and metastasis. Journal of Clinical Investigation.
Peer reviewed

Gomez Giro, G., Arias-Fuenzalida, J., Jarazo, J., Zeuschner, D., Ali, M., Possemis, N., Bolognin, S., Halder, R., Jäger, C., Kuper, W., van Hasselt, P., Zaehres, H., del Sol Mesa, A., van der Putten, H., Schoeler, H., & Schwamborn, J. C. (2020). Synapse alterations precede neuronal damage and storage pathology in a human cerebral organoid model of CLN3-juvenile neuronal ceroid lipofuscinosis. Acta Neuropathologica Communications. doi:10.1186/s40478-019-0871-7
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del Sol Mesa, A. (2019). Alzheimer’s disease-associated (hydroxy)methylomic changes in the brain and blood. Clinical Epigenetics.
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del Sol Mesa, A. (2019). SigHotSpotter: scRNA-seq-based computational tool to control cell subpopulation phenotypes for cellular rejuvenation strategies. Bioinformatics.
Peer reviewed

del Sol Mesa, A. (2019). Integrative and perturbation based analysis of the transcriptional dynamics of TGFβ/BMP system components in transition from embryonic stem cells to neural progenitors. Stem Cells.
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del Sol Mesa, A. (2019). Assessment of network module identification across complex diseases. Nature Methods.
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del Sol Mesa, A. (2019). Single-cell analysis of cardiogenesis reveals basis for organ-level developmental defects. Nature.
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del Sol Mesa, A. (2019). Modeling Cellular Differentiation and Reprogramming with Gene Regulatory Networks. In Modeling Cellular Differentiation and Reprogramming with Gene Regulatory Networks. Springer.

del Sol Mesa, A. (2019). A general computational approach to predicting synergistic transcriptional cores that determine cellsubpopulation identities. Nucleic Acids Research.
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del Sol Mesa, A., & Ravichandran, S. (2019). Quiescence Modulates Stem Cell Maintenance and Regenerative Capacity in the Aging Brain. Cell.
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del Sol Mesa, A. (2019). Computational Strategies for Niche-Dependent Cell Conversion to Assist Stem Cell Therapy. Trends in Biotechnology.
Peer reviewed

del Sol Mesa, A., Okawa, S., & Ravichandran, S. (2019). Computational Strategies for Niche-Dependent Cell Conversion to Assist Stem Cell Therapy. Trends in Biotechnology.
Peer reviewed

Okawa, S., & del Sol Mesa, A. (2019). A general computational approach to predicting synergistic transcriptional cores that determine cell subpopulation identities. Nucleic Acids Research. doi:10.1093/nar/gkz147
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Zaffaroni, G., Okawa, S., Morales-Ruiz, M., & del Sol Mesa, A. (2019). An integrative method to predict signallingperturbations for cellular transitions. Nucleic Acids Research. doi:10.1093/nar/gkz232
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Del Sol Mesa, A. (2019). Synapse alterations precede neuronal damage and storage pathology in a human cerebral organoid model of CLN3-juvenile neuronal ceroid lipofuscinosis. Acta Neuropathologica.
Peer Reviewed verified by ORBi

del Sol Mesa, A. (2018). Transcriptional synergy as an emergent property defining cell subpopulation identity enables population shift. Nature Communications.
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Ali, M., & del Sol Mesa, A. (2018). Modeling of Cellular Systems: Application in Stem Cell Research and Computational Disease Modeling. Springer International Publishing. doi:10.1007/978-3-319-74974-7_7

del Sol Mesa, A. (2018). Loss of inter-cellular cooperation by complete epithelial-mesenchymal transition supports favorable outcomes in basal breast cancer patients. Oncotarget.
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del Sol Mesa, A., Ravichandran, S., & Michelucci, A. (2018). Integrative Computational Network Analysis Reveals Site-Specific Mediators of Inflammation in Alzheimer's Disease. Frontiers in Physiology.
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del Sol Mesa, A. (2018). The RNA Polymerase II Factor RPAP1 Is Critical for Mediator-Driven Transcription and Cell Identity. Cell Reports.
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Medelnik, J.-P., Roensch, K., Okawa, S., del Sol Mesa, A., Chara, O., Mchedlishvili, L., & Tanaka, E. M. (2018). Signaling-Dependent Control of Apical Membrane Size and Self-Renewal in Rosette-Stage Human Neuroepithelial Stem Cells. Stem Cell Reports. doi:10.1016/j.stemcr.2018.04.018
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Okawa, S., Saltó, C., Ravichandran, S., Yang, S., Toledo, E. M., Arenas, E., & del Sol Mesa, A. (2018). Transcriptional synergy as an emergent property defining cell subpopulation identity enables population shift. Nature Communications. doi:10.1038/s41467-018-05016-8
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Hartmann, A., Okawa, S., Zaffaroni, G., & del Sol Mesa, A. (2018). SeesawPred: A Web Application for Predicting Cell-fate Determinants in Cell Differentiation. Scientific Reports. doi:10.1038/s41598-018-31688-9
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Nicklas, S., Hillje, A.-L., Okawa, S., Rudolph, I.-M., Collmann, F. M., Van Wüllen, T. M., del Sol Mesa, A., & Schwamborn, J. C. (2018). A complex of the ubiquitin ligase TRIM32 and the deubiquitinase USP7 balances the level of c-Myc ubiquitination and thereby determines neural stem cell fate specification. Cell Death and Differentiation. doi:10.1038/s41418-018-0144-1
Peer reviewed

del Sol Mesa, A. (2017). Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons. Genome Research.
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Ashrafi, A., Garcia, P., Kollmus, H., Schughart, K., del Sol Mesa, A., Buttini, M., & Glaab, E. (October 2017). Absence of regulator of G-protein signaling 4 does not protect against dopamine neuron dysfunction and injury in the mouse 6-hydroxydopamine lesion model of Parkinson's disease. Neurobiology of Aging, 58, 30-33. doi:10.1016/j.neurobiolaging.2017.06.008
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del Sol Mesa, A., & Zickenrott, S. (2017). Prediction of Chromatin Accessibility in Gene-Regulatory Regions from Transcriptomics Data. Scientific Reports. doi:10.1038/s41598-017-04929-6
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del Sol Mesa, A. (2017). Absence of regulator of G-protein signaling 4 does not protect against dopamine neuron dysfunction and injury in the mouse 6-hydroxydopamine lesion model of Parkinson’s disease. Neurobiology of Aging.
Peer reviewed

del Sol Mesa, A. (2017). Bioinformatics Tools for Genome-Wide Epigenetic Research. In Neuroepigenomics in Aging and Disease. Springer International Publishing. doi:10.1007/978-3-319-53889-1_25
Peer reviewed

del Sol Mesa, A. (2017). Wnt/Tcf1 pathway restricts embryonic stem cell cycle through activation of the Ink4/Arf locus. PLoS Genetics. doi:10.1371/journal.pgen.1006682
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del Sol Mesa, A., Jung Geb. Zickenrott, S., & Hartmann, A. (2017). RefBool: a reference-based algorithm for discretizing gene expression data. Bioinformatics.
Peer reviewed

del Sol Mesa, A. (2017). Big-data-driven stem cell science and tissue engineering: vision and unique opportunities. Cell Stem Cell.
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Ravichandran, S., & del Sol Mesa, A. (2017). Identifying niche mediated regulatory factors of stem cell phenotypic state: a systems biology approach. FEBS Letters. doi:10.1002/1873-3468.12559
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Frejo, L., Requena, T., Okawa, S., Gallego-Martinez, A., Martinez-Bueno, M., Aran, I., Batuecas-Caletrio, A., Benitez-Rosario, J., Espinosa-Sanchez, J. M., Fraile-Rodrigo, J. J., García-Arumi, A. M., González-Aguado, R., Marques, P., Martin-Sanz, E., Perez-Fernandez, N., Pérez-Vázquez, P., Perez-Garrigues, H., Santos-Perez, S., Soto-Varela, A., ... Lopez-Escamez, J. A. (2017). Regulation of Fn14 Receptor and NF-κB Underlies Inflammation in Meniere’s Disease. Frontiers in Immunology. doi:10.3389/fimmu.2017.01739
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Ravichandran, S., Okawa, S., Martinez Arbas, S., & del Sol Mesa, A. (2016). A systems biology approach to identify niche determinants of cellular phenotypes. Stem Cell Research. doi:10.1016/j.scr.2016.09.006
Peer reviewed

Espinosa Angarica, V., & del Sol Mesa, A. (August 2016). Modeling heterogeneity in the pluripotent state: A promising strategy for improving the efficiency and fidelity of stem cell differentiation. BioEssays, 38 (8). doi:10.1002/bies.201600103
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Antony, P., Tallam, A., Perumal, T. M., Jäger, C., Fritz, J., Balling, R., del Sol Mesa, A., Michelucci, A., & Vallar, L. (2016). Gene Regulatory Network Inference of Immunoresponsive Gene 1 (IRG1) Identifies Interferon Regulatory Factor 1 (IRF1) as Its Transcriptional Regulator in Mammalian Macrophages. PLoS ONE. doi:10.1371/journal.pone.0149050
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del Sol Mesa, A., Zickenrott, S., & Espinosa Angarica, V. (14 January 2016). Prediction of disease-gene-drug relationships following a differential network analysis. Cell Death and Disease, 7, 2040. doi:10.1038/cddis.2015.393
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Okawa, S., Nicklas, S., Zickenrott, S., Schwamborn, J. C., & del Sol Mesa, A. (2016). A generalized gene regulatory network model of stem cell differentiation for predicting lineage specifiers. Stem Cell Reports. doi:10.1016/j.stemcr.2016.07.014
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Bunk, E., Ertaylan, G., Ortega, F., Pavlou, M. A., Gonzalez Cano, L., Stergiopoulos, A., Safaiyan, S., Voels, S., van Cann, M., Politis, P., Berninger, B., del Sol Mesa, A., & Schwamborn, J. C. (2016). Prox1 is required for oligodendrocyte cell identity in adult neural stem cells of the subventricular zone. Stem Cells. doi:10.1002/stem.2374
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Ashrafi, A., Buttini, M., Garcia, P., del Sol Mesa, A., & Glaab, E. (2016). Exploring therapeutic viability of a non-dopaminergic target for Parkinson’s disease. Movement Disorders, 31 (2), 630.
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Okawa, S., & del Sol Mesa, A. (2015). A computational strategy for predicting lineage specifiers in stem cell subpopulations. Stem Cell Research. doi:10.1016/j.scr.2015.08.006
Peer reviewed

Killcoyne, S., & del Sol Mesa, A. (2015). Identification of large-scale genomic variation in cancer genomes using in silico reference models. Nucleic Acids Research. doi:10.1093/nar/gkv828
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del Sol Mesa, A., & Mummery, C. (2015). Transcriptome of human foetal heart compared with cardiomyocytes from pluripotent stem cells. Development.
Peer reviewed

Rodriguez, A.* , Crespo, I.* , Androsova, G., & del Sol Mesa, A. (09 June 2015). Discrete Logic Modelling Optimization to Contextualize Prior Knowledge Networks Using PRUNET. PLoS ONE, 10 (6), 0127216. doi:10.1371/journal.pone.0127216
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* These authors have contributed equally to this work.

del Sol Mesa, A. (2015). Discrete Logic Modelling Optimization to Contextualize Prior Knowledge Networks Using PRUNET. PLoS ONE.
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Grosse-Wilde, A., Fouquier d'Hérouël, A., McIntosh, E., Ertaylan, G., Skupin, A., Kuestner, R. E., del Sol Mesa, A., Walters, K.-A., & Huang, S. (28 May 2015). Stemness of the hybrid Epithelial/Mesenchymal State in Breast Cancer and Its Association with Poor Survival. PLoS ONE, 10 (5), 0126522. doi:10.1371/journal.pone.0126522
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del Sol Mesa, A. (2015). The RNA helicase DDX6 regulates cell-fate specification in neural stem cells via miRNAs. Nucleic Acids Research.
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Nicklas, S., Okawa, S., Hillje, A.-L., Gonzalez Cano, L., del Sol Mesa, A., & Schwamborn, J. C. (2015). The RNA helicase DDX6 regulates cell-fate specification in neural stem cells via miRNAs. Nucleic Acids Research. doi:10.1093/nar/gkv138
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Bahnassawy, L. A., Perumal, T., Gonzalez Cano, L., Hillje, A.-L., Taher, L., Makalowski, W., Suzuki, Y., Fuellen, G., del Sol Mesa, A., & Schwamborn, J. C. (2015). TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability. Scientific Reports. doi:10.1038/srep13456
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Okawa, S., Espinosa Angarica, V., Lemischka, I., Moore, K., & del Sol Mesa, A. (2015). A differential network analysis approach for lineage specifier prediction in stem cell subpopulations. NPJ Systems Biology and Applications. doi:10.1038/npjsba.2015.12
Peer reviewed

Ertaylan, G., Okawa, S., Schwamborn, J. C., & del Sol Mesa, A. (2014). Gene regulatory network analysis reveals differences in site-specific cell fate determination in mammalian brain. Frontiers in Cellular Neuroscience. doi:10.3389/fncel.2014.00437
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del Sol Mesa, A. (2014). sorting signal targeting mRNA into hepatic extracellular vesicles. RNA Biology.
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del Sol Mesa, A. (2014). A population shift view of cellular reprogramming. Stem Cells.
Peer reviewed

Liu, G.-H., Suzuki, K., Li, M., Qu, J., Montserrat, N., Tarantino, C., Gu, Y., Yi, F., Xu, X., Zhang, W., Ruiz, S., Plongthongkum, N., Zhang, K., Masuda, S., Nivet, E., Tsunekawa, Y., Soligalla, R. D., Goebl, A., Aizawa, E., ... Izpisua Belmonte, J. C. (2014). Modelling Fanconi anemia pathogenesis and therapeutics using integration-free patient-derived iPSCs. Nature Communications, 5, 4330. doi:10.1038/ncomms5330
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Killcoyne, S., & del Sol Mesa, A. (2014). FIGG: Simulating populations of whole genome sequences for heterogeneous data analyses. BMC Bioinformatics, 15 (1). doi:10.1186/1471-2105-15-149
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Fujita, K. A., Ostaszewski, M., Matsuoka, Y., Ghosh, S., Glaab, E., Trefois, C., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kodama, A., Satagopam, V., Eifes, S., del Sol Mesa, A., Schneider, R., Kitano, H., & Balling, R. (2014). Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map. Molecular Neurobiology. doi:10.1007/s12035-013-8489-4
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Vegh, M. J., Rausell, A., Loos, M., Heldring, C. M., Jurkowski, W., van Nierop, P., Paliukovich, I., Li, K. W., del Sol Mesa, A., Smit, A. B., Spijker, S., & van Kesteren, R. E. (2014). Hippocampal extracellular matrix levels and stochasticity in synaptic protein expression increase with age and are associated with age-dependent cognitive decline. Molecular and Cellular Proteomics. doi:10.1074/mcp.M113.032086
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del Sol Mesa, A. (2014). Global DNA methylation and transcriptional analyses of human ESC-derived cardiomyocytes. Protein and Cell. doi:10.1007/s13238-013-0016-x
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Ostaszewski, M., Fujita, K., Matsuoka, Y., Ghosh, S., Glaab, E., Trefois, C., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kolodkin, A., Kodama, A., Satagopam, V., Biryukov, M., Eifes, S., del Sol Mesa, A., Schneider, R., ... Balling, R. (09 March 2013). The Parkinson's Disease Map: A Framework for Integration, Curation and Exploration of Disease-related Pathways [Poster presentation]. The 11th International Conference on Alzheimer's & Parkinson's Diseases, Florence, Italy.

Crespo, I., & del Sol Mesa, A. (2013). A general strategy for cellular reprogramming: the importance of transcription factor cross-repression. Stem Cells. doi:10.1002/stem.1473
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del Sol Mesa, A. (2013). Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks. BMC Systems Biology.
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Crespo, I., Krishna, A., Le Béchec, A., del Sol Mesa, A., & *Co-first-authors. (2013). Predicting missing expression values in gene regulatory networks using a discrete logic modeling optimization guided by network stable states. Nucleic Acids Research, 41 (1), 8. doi:10.1093/nar/gks785
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Trefois, C., Fujita, A. K., Ostaszewski, M., Matsuoka, Y., Ghosh, S., Glaab, E., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kodama, A., Satagopam, V., Eifes, S., del Sol Mesa, A., Schneider, R., Kitano, H., & Balling, R. (August 2012). Constructing a comprehensive map of Parkinson’s disease to elucidate underlying mechanisms of its multifaceted molecular pathology [Poster presentation]. The 13th International Conference on Systems Biology.

Moes, M., Le Béchec, A., Crespo, I., Laurini, C., Halavatyi, A., Vetter, G., del Sol Mesa, A., & Friederich, A. (2012). A Novel Network Integrating a miRNA-203/SNAI1 Feedback Loop which Regulates Epithelial to Mesenchymal Transition. PLoS ONE, 7 (4), 35440. doi:10.1371/journal.pone.0035440
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del Sol Mesa, A. (2012). PLAU inferred from a correlation network is critical for suppressor function of regulatory T cells. Molecular Systems Biology.
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del Sol Mesa, A. (2012). Evolutionary conservation and network structure characterize genes of phenotypic relevance for mitosis in human. PLoS ONE.
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Ostaszewski, M., Eifes, S., & del Sol Mesa, A. (2012). Evolutionary conservation and network structure characterize genes of phenotypic relevance for mitosis in human. PLoS ONE, 7 (5), 36488. doi:10.1371/journal.pone.0036488
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Crespo, I., Rump, K., Jurkowski, W., Kitano, H., & del Sol Mesa, A. (2012). Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease. BMC Systems Biology, 6 (132). doi:10.1186/1752-0509-6-132
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Jurkowski, W., Roomp, K., Crespo, I., Schneider, J., & del Sol Mesa, A. (2011). PPARγ population shift produces disease-related changes in molecular networks associated with metabolic syndrome. Cell Death and Disease, 2 (8), 192. doi:10.1038/cddis.2011.74
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del Sol Mesa, A., Balling, R., Hood, L., & Galas, D. J. (2010). Diseases as network perturbations. Current Opinion in Biotechnology, 21 (4), 566-571. doi:10.1016/j.copbio.2010.07.010
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Carbonell, P., & del Sol Mesa, A. (2009). Methyl side-chain dynamics prediction based on protein structure. Bioinformatics, 25 (19), 2552-8. doi:10.1093/bioinformatics/btp463
Peer reviewed

del Sol Mesa, A., Fujihashi, H., Amoros, D., & Nussinov, R. (2009). Residues crucial for maintaining short paths in network communication mediate signaling in proteins. Molecular Systems Biology, 2.
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Tsai, C. J., del Sol Mesa, A., & Nussinov, R. (2009). Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms. Molecular Biosystems, 5 (3), 207-16. doi:10.1039/b819720b
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del Sol Mesa, A., Tsai, C.-J., Ma, B., & Nussinov, R. (2009). The origin of Allosteric Modulation: Multiple Pre-existing Pathways Selection. Structure, 17 (8), 1042-1050.
Peer reviewed

Carbonell, P., Nussinov, R., & del Sol Mesa, A. (2009). Energetic determinants of protein binding specificity: insights into protein interaction networks. Proteomics, 9 (7), 1744-53. doi:10.1002/pmic.200800425
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Tsai, C.-J., del Sol Mesa, A., & Nussinov, R. (2008). Allostery: absence of a change in shape does not imply that allostery is not at play. Journal of Molecular Biology, 378 (1), 1-11. doi:10.1016/j.jmb.2008.02.034
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Hu, Z., Bowen, D., Southerland, W. M., del Sol Mesa, A., Pan, Y., Nussinov, R., & Ma, B. (12 June 2007). Ligand binding and circular permutation modify residue interaction network in DHFR. PLoS Computational Biology, 3 (6), 117. doi:10.1371/journal.pcbi.0030117
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del Sol Mesa, A., & Carbonell, P. (13 April 2007). The modular organization of domain structures: insights into protein-protein binding. PLoS Computational Biology, 3 (12), 239. doi:10.1371/journal.pcbi.0030239
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del Sol Mesa, A., Arauzo-Bravo, M. J., Amoros, D., & Nussinov, R. (12 April 2007). Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages. Genome biology, 8 (5), 92. doi:10.1186/gb-2007-8-5-r92
Peer reviewed

del Sol Mesa, A., Fujihashi, H., Amoros, D., & Nussinov, R. (11 July 2006). Residue centrality, functionally important residues, and active site shape: analysis of enzyme and non-enzyme families. Protein Science: A Publication of the Protein Society, 15 (9), 2120-8. doi:10.1110/ps.062249106
Peer reviewed

del Sol Mesa, A., Fujihashi, H., Amoros, D., & Nussinov, R. (13 May 2006). Residues crucial for maintaining short paths in network communication mediate signaling in proteins. Molecular Systems Biology, 2, 2006.0019. doi:10.1038/msb4100063
Peer Reviewed verified by ORBi

Carro, A., Tress, M., de Juan, D., Pazos, F., Lopez-Romero, P., del Sol Mesa, A., Valencia, A., & Rojas, A. M. (13 March 2006). TreeDet: a web server to explore sequence space. Nucleic Acids Research, 34 (Web Server issue), 110-5. doi:10.1093/nar/gkl203
Peer Reviewed verified by ORBi

de Juan, D., Mellado, M., Rodriguez-Frade, J. M., Hernanz-Falcon, P., Serrano, A., del Sol Mesa, A., Valencia, A., Martinez-A, C., & Rojas, A. M. (11 March 2005). A framework for computational and experimental methods: identifying dimerization residues in CCR chemokine receptors. Bioinformatics, 21 Suppl 2, 13-8. doi:10.1093/bioinformatics/bti1101
Peer reviewed

del Sol Mesa, A., & O'Meara, P. (2005). Small-world network approach to identify key residues in protein-protein interaction. Proteins, 58 (3), 672-82. doi:10.1002/prot.20348
Peer Reviewed verified by ORBi

del Sol Mesa, A., Fujihashi, H., & O'Meara, P. (2005). Topology of small-world networks of protein-protein complex structures. Bioinformatics, 21 (8), 1311-5. doi:10.1093/bioinformatics/bti167
Peer reviewed

Hernanz-Falcon, P., Rodriguez-Frade, J. M., Serrano, A., Juan, D., del Sol Mesa, A., Soriano, S. F., Roncal, F., Gomez, L., Valencia, A., Martinez-A, C., & Mellado, M. (2004). Identification of amino acid residues crucial for chemokine receptor dimerization. Nature immunology, 5 (2), 216-23. doi:10.1038/ni1027
Peer reviewed

del Sol Mesa, A., Pazos, F., & Valencia, A. (2003). Automatic methods for predicting functionally important residues. Journal of molecular biology, 326 (4), 1289-302. doi:10.1016/S0022-2836(02)01451-1
Peer reviewed

del Sol Mesa, A. (2002). Connection between type B (or C) and F factorizations and construction of algebras. Journal of Physics: A Mathematical and General. doi:10.1088/0305-4470/35/12/310
Peer reviewed

del Sol Mesa, A. (2000). Connection between type A and E factorizations and construction of satellite algebras. Journal of Physics: A Mathematical and General. doi:10.1088/0305-4470/33/22/309
Peer reviewed

del Sol Mesa, A. (1999). A class of exactly solvable matrix models. Journal of Mathematical Chemistry. doi:10.1023/A:1019109222477
Peer Reviewed verified by ORBi

del Sol Mesa, A. (1998). Generalized Morse potential: Symmetry and satellite potentials. Journal of Physics: A Mathematical and General. doi:10.1088/0305-4470/31/1/028
Peer reviewed

del Sol Mesa, A. (1997). Supermultiplicity and the relativistic coulomb problem with arbitrary spin. Foundations of Physics. doi:10.1007/BF02551438
Peer reviewed

del Sol Mesa, A. (1997). Ordering problems in fermionic relativistic quantum mechanics. International Journal of Modern Physics A. doi:10.1142/S0217751X97000359
Peer Reviewed verified by ORBi

del Sol Mesa, A. (1996). Fermionic anomalies in quantum-mechanical relativistic problems. Il Nuovo Cimento.
Peer reviewed

del Sol Mesa, A. (1996). On some solutions of the Dirac equation. Journal of Physics: A Mathematical and General. doi:10.1088/0305-4470/29/11/016
Peer reviewed

del Sol Mesa, A. (1996). The dirac oscillator of arbitrary spin. Journal of Physics: A Mathematical and General. doi:10.1088/0305-4470/29/14/039
Peer reviewed

del Sol Mesa, A. (1995). Symmetry Lie algebra of the two body systems with a Dirac oscillator interaction. Revista Mexicana de Física.
Peer reviewed

del Sol Mesa, A. (1994). On some aspects of a relativistic problem. Canadian Journal of Physics.
Peer Reviewed verified by ORBi

del Sol Mesa, A. (1994). Relationship between different approaches to the relativistic two body problem. Journal of Physics: A Mathematical and General.
Peer reviewed

del Sol Mesa, A. (1993). Quantum groups and the recovery of the U(3) symmetry in the hamiltonian of the nuclear shell model. Journal of Physics: A Mathematical and General. doi:10.1088/0305-4470/26/5/033
Peer reviewed

del Sol Mesa, A. (1992). Transformation from U(3) to a pseudo U(3) basis of the matrix representation of a deformed Nilsson hamiltonian. Revista Mexicana de Física.
Peer reviewed

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