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HE Feng

University of Luxembourg > Luxembourg Centre for Systems Biomedicine > Research LCSB

Main Referenced Co-authors
Zeng, An-Ping (9)
OLLERT, Markus  (7)
KRÜGER, Rejko  (6)
BALLING, Rudolf  (5)
Capelle, Christophe M. (5)
Main Referenced Keywords
Animals (5); Mice (4); Systems Biology (3); Algorithms (2); COVID-19 (2);
Main Referenced Unit & Research Centers
Luxembourg Centre for Systems Biomedicine (LCSB): Experimental Neurobiology (Balling Group) (5)
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group) (2)
Luxembourg Centre for Systems Biomedicine (LCSB): Clinical & Experimental Neuroscience (Krüger Group) (2)
LIH - Luxembourg Institute of Health (1)
Luxembourg Centre for Systems Biomedicine (LCSB): Eco-Systems Biology (Wilmes Group) (1)
Main Referenced Disciplines
Biochemistry, biophysics & molecular biology (11)
Immunology & infectious disease (4)
Neurology (3)
Genetics & genetic processes (2)
Environmental sciences & ecology (1)

Publications (total 19)

The most downloaded
183 downloads
HE, F., Wang, W., Zheng, P., Sudhakar, P., Sun, J., & Zeng, A.-P. (February 2014). Essential O-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions. Integrative Biology, 6 (2), 215-223. doi:10.1039/c3ib40180d https://hdl.handle.net/10993/15045

The most cited

87 citations (OpenAlex)

Ma, B., Zimmermann, T., Rohde, M., Winkelbach, S., HE, F., Lindenmaier, W., & Dittmar, K. E. J. (2007). Use of Autostitch for automatic stitching of microscope images. Micron, 38 (5), 492-9. doi:10.1016/j.micron.2006.07.027 https://hdl.handle.net/10993/336

de Nies, L., Galata, V., Martin-Gallausiaux, C., DESPOTOVIC, M., BUSI, S. B., Snoeck, C. J., DELACOUR, L., Budagavi, D. P., LACZNY, C. C., HABIER, J., Lupu, P.-C., HALDER, R., Fritz, J. V., MARQUES, T., Sandt, E., O'Sullivan, M. P., GHOSH, S., SATAGOPAM, V., Consortium, C.-V., ... WILMES, P. (09 March 2023). Altered infective competence of the human gut microbiome in COVID-19. Microbiome, 11 (1), 46. doi:10.1186/s40168-023-01472-7
Peer Reviewed verified by ORBi

Capelle, C., Cire, S., HANSEN, M., PAVELKA, L., Hedin, F., Konstantinou, M., Revets, D., TSLAF, V., Marques, T., Baron, A., Domingues, O., Zeng, N., MAY, P., COSMA, A., Balling, R., KRÜGER, R., OLLERT, M., & HE, F. (2022). Early-to-mid idiopathic Parkinson’s disease shows a more cytotoxic but declined CD8-regulatory peripheral immune profile. ORBilu-University of Luxembourg. https://orbilu.uni.lu/handle/10993/51989. doi:10.21203/rs.3.rs-1834770/v1

Danileviciute, E., Zeng, N., Capelle, C. M., Paczia, N., Gillespie, M. A., KURNIAWAN, H., Benzarti, M., Merz, M. P., COOWAR, D., Fritah, S., Vogt Weisenhorn, D. M., GOMEZ GIRO, G., GRUSDAT, M., BARON, A., Guerin, C., Franchina, D. G., Léonard, C., Domingues, O., Delhalle, S., ... HE, F. (26 May 2022). PARK7/DJ-1 promotes pyruvate dehydrogenase activity and maintains T(reg) homeostasis during ageing. Nature Metabolism, 4 (5), 589-607. doi:10.1038/s42255-022-00576-y
Peer Reviewed verified by ORBi

Capelle, C. M., Ciré, S., Domingues, O., ERNENS, I., Hedin, F., Fischer, A., Snoeck, C. J., Ammerlaan, W., Konstantinou, M., GRZYB, K., SKUPIN, A., Carty, C. L., HILGER, C., Gilson, G., Celebic, A., WILMES, P., Del Sol, A., Kaplan, I. M., BETSOU, F., ... HE, F. (2022). Combinatorial analysis reveals highly coordinated early-stage immune reactions that predict later antiviral immunity in mild COVID-19 patients. Cell Reports Medicine, 3 (4), 100600. doi:10.1016/j.xcrm.2022.100600
Peer reviewed

Capelle, C. M., Chen, A., Zeng, N., Baron, A., GRZYB, K., ARNS, T., SKUPIN, A., OLLERT, M., & HE, F. (2022). Stress hormone signalling inhibits Th1 polarization in a CD4 T-cell-intrinsic manner via mTORC1 and the circadian gene PER1. Immunology, 165 (4), 428--444. doi:10.1111/imm.13448
Peer Reviewed verified by ORBi

Zeng, N.* , Capelle, C. M.* , BARON, A., KOBAYASHI, T., Cire, S., TSLAF, V., Leonard, C., COOWAR, D., Koseki, H., Westendorf, A. M., Buer, J., BRENNER, D., KRÜGER, R., Balling, R., OLLERT, M., & HE, F. (2022). DJ‐1 depletion prevents immunoaging in T‐cell compartments. EMBO Reports, 23 (3). doi:10.15252/embr.202153302
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

Zeng, N., Capelle, C., Baron, A., Cire, S., Leonard, C., COOWAR, D., Koseki, H., Westendorf, A., Buer, J., BRENNER, D., KRÜGER, R., Balling, R., OLLERT, M., & HE, F. (2021). DJ-1 depletion slows down immunoaging in T-cell compartments. bioRxiv. doi:10.1101/2021.05.21.445139https://orbilu.uni.lu/handle/10993/50270

Zanin, M., Santos, B. F. R., ANTONY, P., Berenguer-Escuder, C., Larsen, S. B., HANSS, Z., BARBUTI, P., BAUMURATOV, A., GROSSMANN, D., Capelle, C. M., Weber, J., BALLING, R., Ollert, M., KRÜGER, R., Diederich, N. J., & HE, F. (10 November 2020). Mitochondria interaction networks show altered topological patterns in Parkinson's disease. NPJ Systems Biology and Applications, 6 (1), 38. doi:10.1038/s41540-020-00156-4
Peer Reviewed verified by ORBi

Sudhakar, P.* , Reck, M.* , Wang, W., HE, F., Dobler, I. W., & Zeng, A.-P. (May 2014). Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton. BMC Genomics, 15, 362. doi:10.1186/1471-2164-15-362
Peer Reviewed verified by ORBi
* These authors have contributed equally to this work.

HE, F., Wang, W., Zheng, P., Sudhakar, P., Sun, J., & Zeng, A.-P. (February 2014). Essential O-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions. Integrative Biology, 6 (2), 215-223. doi:10.1039/c3ib40180d
Peer reviewed

HE, F., Sauermann, U., Beer, C., Winkelmann, S., Yu, Z., Sopper, S., Zeng, A.-P., & Wirth, M. (2014). Identification of molecular sub-networks associated with cell survival in a chronically SIVmac-infected human CD4+ T cell line. Virology Journal, 11, 152. doi:10.1186/1743-422X-11-152
Peer Reviewed verified by ORBi

HE, F., & BALLING, R. (2013). The role of regulatory T cells in neurodegenerative diseases. Wiley Interdisciplinary Reviews. Systems Biology and Medicine, 5 (2), 153-80. doi:10.1002/wsbm.1187
Peer Reviewed verified by ORBi

HE, F., Chen, H., Probst-Kepper, M., Geffers, R., EIFES, S., Del Sol, A., Schughart, K., Zeng, A.-P., & BALLING, R. (2012). PLAU inferred from a correlation network is critical for suppressor function of regulatory T cells. Molecular Systems Biology, 8, 624. doi:10.1038/msb.2012.56
Peer Reviewed verified by ORBi

HE, F., BALLING, R., & Zeng, A.-P. (2009). Reverse engineering and verification of gene networks: principles, assumptions, and limitations of present methods and future perspectives. Journal of Biotechnology, 144 (3), 190-203. doi:10.1016/j.jbiotec.2009.07.013
Peer reviewed

da Silva, M. R., Sun, J., Ma, H., HE, F., & Zeng, A.-P. (2007). Metabolic Networks, Chapter 10. In B. H. Junker & F. Schreiber (Eds.), Analysis of Biological Networks. Wiley. doi:10.1002/9780470253489.ch10
Peer reviewed

Ma, B., HE, F., Jablonska, J., Winkelbach, S., Lindenmaier, W., Zeng, A.-P., & Dittmar, K. E. J. (2007). Six-color segmentation of multicolor images in the infection studies of Listeria monocytogenes. Microscopy Research and Technique, 70 (2), 171-8. doi:10.1002/jemt.20401
Peer Reviewed verified by ORBi

Ma, B., Zimmermann, T., Rohde, M., Winkelbach, S., HE, F., Lindenmaier, W., & Dittmar, K. E. J. (2007). Use of Autostitch for automatic stitching of microscope images. Micron, 38 (5), 492-9. doi:10.1016/j.micron.2006.07.027
Peer reviewed

HE, F., Buer, J., Zeng, A.-P., & BALLING, R. (2007). Dynamic cumulative activity of transcription factors as a mechanism of quantitative gene regulation. Genome Biology, 8 (9), 181. doi:10.1186/gb-2007-8-9-r181
Peer Reviewed verified by ORBi

HE, F., & Zeng, A.-P. (2006). In search of functional association from time-series microarray data based on the change trend and level of gene expression. BMC Bioinformatics, 7, 69. doi:10.1186/1471-2105-7-69
Peer Reviewed verified by ORBi

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