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JURKOWSKI Wiktor

Main Referenced Co-authors
CRESPO, Isaac  (6)
Konieczny, Leszek (6)
Roterman, Irena (6)
DEL SOL MESA, Antonio  (5)
BALLING, Rudolf  (4)
Main Referenced Keywords
Bioinformatics (2); Knowledge repository (2); Molecular neuropathology (2); Parkinson’s disease (2); Aging (1);
Main Referenced Unit & Research Centers
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group) (7)
Luxembourg Centre for Systems Biomedicine (LCSB): Computational Biology (Del Sol Group) (5)
Luxembourg Centre for Systems Biomedicine (LCSB): Experimental Neurobiology (Balling Group) (3)
Luxembourg Centre for Systems Biomedicine (LCSB): Biomedical Data Science (Glaab Group) (2)
ULHPC - University of Luxembourg: High Performance Computing (2)
Main Referenced Disciplines
Biochemistry, biophysics & molecular biology (17)
Life sciences: Multidisciplinary, general & others (6)
Computer science (2)
Cardiovascular & respiratory systems (1)
Endocrinology, metabolism & nutrition (1)

Publications (total 25)

The most downloaded
553 downloads
Chaiboonchoe, A., Jurkowski, W., Pellet, J., Glaab, E., Kolodkin, A., Raussel, A., Le Béchec, A., Ballereau, S., Meyniel, L., Crespo, I., Ahmed, H., Volpert, V., Lotteau, V., Baliga, N., Hood, L., Sol, A. D., Balling, R., & Auffray, C. (2013). On different aspects of network analysis in systems biology. Systems Biology, 1, 181-207. doi:10.1007/978-94-007-6803-1_6 https://hdl.handle.net/10993/27261

The most cited

217 citations (OpenCitations)

Fujita, K. A., Ostaszewski, M., Matsuoka, Y., Ghosh, S., Glaab, E., Trefois, C., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kodama, A., Satagopam, V., Eifes, S., del Sol Mesa, A., Schneider, R., Kitano, H., & Balling, R. (2014). Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map. Molecular Neurobiology. doi:10.1007/s12035-013-8489-4 https://hdl.handle.net/10993/4778

Reinthaler, E., Lal, D., Jurkowski, W., Feucht, M., Steinböck, H., Gruber-Sedlmayr, U., Ronen, G., Geldner, J., Haberlandt, E., Neophytou, B., Hahn, A., Altmüller, J., Thiel, H., Toliat, M., Lerche, H., Nürnberg, P., Sander, T., Neubauer, B., & Zimprich, F. (2014). Analysis of ELP4, SRPX2, and interacting genes in typical and atypical rolandic epilepsy. Epilepsia, 55 (8), 89–e93. doi:10.1111/epi.12712
Peer Reviewed verified by ORBi

Nielsen, S. S., Jurkowski, W., Danoy, G., Jimenez Laredo, J. L., Schneider, R., Talbi, E.-G., & Bouvry, P. (2014). Evolutionary Multi-Objective Optimisation with Quantile Constraint for the Protein Structure Similarity Problem [Paper presentation]. 5th International Conference on Metaheuristics and Nature Inspired Computing (META).

Nielsen, S. S., Jurkowski, W., Danoy, G., Jimenez Laredo, J. L., Schneider, R., Talbi, E.-G., & Bouvry, P. (2014). Evolutionary multi objective optimisation with diversity as objective for the protein structure similarity problem [Paper presentation]. Natural computing for protein structure prediction Workshop, 13th International Conference on Parallel Problem Solving From Nature (PPSN), Ljubljana, Slovenia.

Fujita, K. A., Ostaszewski, M., Matsuoka, Y., Ghosh, S., Glaab, E., Trefois, C., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kodama, A., Satagopam, V., Eifes, S., del Sol Mesa, A., Schneider, R., Kitano, H., & Balling, R. (2014). Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map. Molecular Neurobiology. doi:10.1007/s12035-013-8489-4
Peer Reviewed verified by ORBi

Vegh, M. J., Rausell, A., Loos, M., Heldring, C. M., Jurkowski, W., van Nierop, P., Paliukovich, I., Li, K. W., del Sol Mesa, A., Smit, A. B., Spijker, S., & van Kesteren, R. E. (2014). Hippocampal extracellular matrix levels and stochasticity in synaptic protein expression increase with age and are associated with age-dependent cognitive decline. Molecular and Cellular Proteomics. doi:10.1074/mcp.M113.032086
Peer Reviewed verified by ORBi

Ostaszewski, M., Fujita, K., Matsuoka, Y., Ghosh, S., Glaab, E., Trefois, C., Crespo, I., Perumal, T. M., Jurkowski, W., Antony, P., Diederich, N., Buttini, M., Kolodkin, A., Kodama, A., Satagopam, V., Biryukov, M., Eifes, S., del Sol Mesa, A., Schneider, R., ... Balling, R. (09 March 2013). The Parkinson's Disease Map: A Framework for Integration, Curation and Exploration of Disease-related Pathways [Poster presentation]. The 11th International Conference on Alzheimer's & Parkinson's Diseases, Florence, Italy.

Jurkowski, W., Yarzdi, S., & Elofsson, A. (2013). Ligand binding properties of human galanin receptors. Molecular Mebrance Biology, 30 (2), 206-216. doi:10.3109/09687688.2012.750384

Chaiboonchoe, A., Jurkowski, W., Pellet, J., Glaab, E., Kolodkin, A., Raussel, A., Le Béchec, A., Ballereau, S., Meyniel, L., Crespo, I., Ahmed, H., Volpert, V., Lotteau, V., Baliga, N., Hood, L., Sol, A. D., Balling, R., & Auffray, C. (2013). On different aspects of network analysis in systems biology. Systems Biology, 1, 181-207. doi:10.1007/978-94-007-6803-1_6
Peer reviewed

Chaiboonchoe, A., Jurkowski, W., Pellet, J., Glaab, E., Kolodkin, A., Raussel, A., Le Béchec, A., Meyniel, L., Ballereau, S., Crespo, I., Ahmed, H., Volpert, V., Lotteau, V., Baliga, N., Hood, L., del Sol, A., Balling, R., & Auffray, C. (2013). Network analysis for systems biology. In A. Prokop & Csukás (Eds.), Springer book in Systems Biology, Vol.1: Systems Biology:, Integrative Biology and Simulation Tools (Springer book in Systems Biology, Vol.1). Springer. doi:10.1007/978-94-007-6803-1
Peer reviewed

Paulsen, P. A., Jurkowski, W., Apostolov, R., Lindahl, E., Nissen, P., & Poulsen, H. (2013). The C-terminal cavity of the Na,K-ATPase analyzed by docking and electrophysiology. Molecular Membrane Biology, 30 (2), 195-205. doi:10.3109/09687688.2012.713520
Peer Reviewed verified by ORBi

Alejster, P., Jurkowski, W., & Roterman-Konieczna, I. (2012). Structural information involved in the interpretation of the stepwise protein folding process. In Protein folding in silico : protein folding versus protein structure prediction (pp. 39-54). Woodhead Publishing Limited. doi:DOI:10.1016/B978-1-907568-17-6.50003-7
Peer reviewed

Jurkowski, W., Baster, Z., Dulak, D., & Roterman-Konieczna, I. (2012). The early-stage intermediate. In I. Roterman-Konieczna (Ed.), Protein Fold Silico Protein Fold Versus Protein Struct Predict (pp. 1-20). Woodhead Publishing Limited. doi:10.1533/9781908818256.1

Crespo, I., Rump, K., Jurkowski, W., Kitano, H., & del Sol Mesa, A. (2012). Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease. BMC Systems Biology, 6 (132). doi:10.1186/1752-0509-6-132
Peer Reviewed verified by ORBi

Banach, M., Prymula, K., Jurkowski, W., Konieczny, L., & Roterman, I. (2012). Fuzzy oil drop model to interpret the structure of antifreeze proteins and their mutants. Journal of Molecular Modeling, 18 (1), 229-237. doi:10.1007/s00894-011-1033-4

Roterman, I., Konieczny, L., Jurkowski, W., Prymula, K., & Banach, M. (2011). Two-intermediate model to characterize the structure of fast-folding proteins. Journal of Theoretical Biology, 283 (1), 60-70. doi:10.1016/j.jtbi.2011.05.027
Peer Reviewed verified by ORBi

Basmarke-Wehelie, R., Sjolinder, H., Jurkowski, W., Elofsson, A., Arnqvist, A., Engstrand, L., Hagner, M., Wallin, E., Guan, N., Kuranasekera, H., Aro, H., & Jonsson, A.-B. (2011). The complement regulator CD46 is bactericidal to Helicobacter pylori and blocks urease activity. Gastroenterology, 141 (3), 918-28. doi:10.1053/j.gastro.2011.05.009
Peer Reviewed verified by ORBi

Roterman, I., Konieczny, L., Banach, M., & Jurkowski, W. (2011). Intermediates in the protein folding process: a computational model. International Journal of Molecular Sciences, 12 (8), 4850-60. doi:10.3390/ijms11084850
Peer Reviewed verified by ORBi

Jurkowski, W., Roomp, K., Crespo, I., Schneider, J., & del Sol Mesa, A. (2011). PPARγ population shift produces disease-related changes in molecular networks associated with metabolic syndrome. Cell Death and Disease, 2 (8), 192. doi:10.1038/cddis.2011.74
Peer Reviewed verified by ORBi

Runesson, J., Sollenberg, U. E., Jurkowski, W., Yazdi, S., Eriksson, E. E., Elofsson, A., & Langel, U. (2010). Determining receptor-ligand interaction of human galanin receptor type 3. Neurochemistry International, 57 (7), 804-11. doi:10.1016/j.neuint.2010.08.018
Peer Reviewed verified by ORBi

Brylinski, M., Prymula, K., Jurkowski, W., Kochanczyk, M., Stawowczyk, E., Konieczny, L., & Roterman, I. (2007). Prediction of functional sites based on the fuzzy oil drop model. PLoS Computational Biology, 3 (5), 1-2. doi:10.1371/journal.pcbi.0030094
Peer Reviewed verified by ORBi

Piekarska, B., Drozd, A., Konieczny, L., Krol, M., Jurkowski, W., Roterman, I., Spolnik, P., Stopa, B., & Rybarska, J. (2006). The indirect generation of long-distance structural changes in antibodies upon their binding to antigen. Chemical Biology and Drug Design, 68 (5), 276-83. doi:10.1111/j.1747-0285.2006.00448.x
Peer Reviewed verified by ORBi

Brylinski, M., Konieczny, L., Czerwonko, P., Jurkowski, W., & Roterman, I. (2005). Early-stage folding in proteins (in silico) sequence-to-structure relation. Journal of Biomedicine & Biotechnology, 2005 (2), 65-79. doi:10.1155/JBB.2005.65
Peer reviewed

Brylinski, M., Jurkowski, W., Konieczny, L., & Roterman, I. (2004). Limited conformational space for early-stage protein folding simulation. Bioinformatics, 20 (2), 199-205. doi:10.1093/bioinformatics/btg391
Peer reviewed

Jurkowski, W., Brylinski, M., Konieczny, L., Wiiniowski, Z., & Roterman, I. (2004). Conformational subspace in simulation of early-stage protein folding. Proteins, 55 (1), 115-27. doi:10.1002/prot.20002
Peer Reviewed verified by ORBi

Jurkowski, W., Brylinski, M., Konieczny, L., & Roterman, I. (2004). Lysozyme folded in silico according to the limited conformational sub-space. Journal of Biomolecular Structure and Dynamics, 22 (2), 149-58. doi:10.1080/07391102.2004.10506991
Peer Reviewed verified by ORBi

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