[en] Knowledge of concentrations of intracellular metabolites is important for quantitative analysis of metabolic networks. As far as the very fast response of intracellular metabolites in the millisecond range is concerned, the frequently used pulse technique shows an inherent limitation. The time span between the disturbance and the first sample is constrained by the time necessary to obtain a homogeneous distribution of the pertubation within the bioreactor. For determination of rapid changes, a novel sampling technique based on the stopped-flow method has been developed. A continuous stream of biosuspension leaving the bioreactor is being mixed with a glucose solution in a turbulent mixing chamber. Through computer-aided activation of sequentially positioned three-way valves, different residence times and thus reaction times can be verified. The application of this new sampling method is illustrated with examples including measurements of adenine nucleotides and glucose-6-phosphate in Saccharomyces cerevisiae as well as measurements related to the PTS system in Escherichia coli.
Disciplines :
Biotechnology
Author, co-author :
Buziol, Stefan; Institute of Biochemical Engineering, University of Stuttgart, Allmandring 31, D-70569 Stuttgart, Germany
Bashir, Imtiaz; Institute of Food Technology, Department of Biotechnology, University of Hohenheim, D-70599 Stuttgart, Germany
Baumeister, Anja; Institute of Food Technology, Department of Biotechnology, University of Hohenheim, D-70599 Stuttgart, Germany
Claassen, Wolfgang; Institute of Food Technology, Department of Biotechnology, University of Hohenheim, D-70599 Stuttgart, Germany
Noisommit-Rizzi, Naruemol; Institute of Biochemical Engineering, University of Stuttgart, D-70569 Stuttgart, Germany
SAUTER, Thomas ; University of Luxembourg > Faculty of Science, Technology and Medicine (FSTM) > Department of Life Sciences and Medicine (DLSM)
Mailinger, Werner; Institute of Biochemical Engineering, University of Stuttgart, D-70569 Stuttgart, Germany
Reuss, Matthias
External co-authors :
yes
Language :
English
Title :
New bioreactor-coupled rapid stopped-flow sampling technique for measurements of metabolite dynamics on a subsecond time scale.
Bergmeyer HU. 1974. Methods in Enzymic Analysis, Vols III and IV. 3rd edition. New York: Academic Press.
Bisswanger H. 2000. Enzymkinetik: Theorie und Methoden. 3rd Edition. Weinheim: Wiley-VHC. p 234-242.
Bray RC. 1961. Sudden freezing as a technique for the study of rapid reactions. Biochem J 81:189-193.
Chance B, Eisenhardt RM, Gibson QH, Lonberg-Holm KK. 1964. Rapid Mixing and Sampling Techniques in Biochemistry. New York: Academic Press. p 89-102.
Chassagnole C, Noisommit-Rizzi N, Schmid JW, Mauch K, Reuss M. 2002. Dynamic modeling of the central carbon metabolism of Escherichia coli. Biotechnol Bioeng 79:53-73.
de Koning W, van Dam K. 1992. A method for the determination of changes of glycolytic metabolites in yeast on a subsecond time scale using extraction at neutral pH. Anal Biochem 204:118-123.
Ditzelmueller G, Woehrer W, Kubicek P, Roehr M. 1983. Nucleotide pools of growing, synchronized and stressed cultures of Saccharomyces cerevisiae. Arch Microbiol 135:63-67.
Hill CW, Harnish BW. 1981. Inversions between ribosomal RNA genes of Escherichia coli. Proc Natl Acad Sci USA 78:7069-7072.
Kopperschläger G, Augustin HW. 1967. Fehlermöglichkeiten bei der Bestimmung von metabolitgehalten in hefezellen. Experientia 23:623-624.
Liao JC, Hou S-Y, Chao Y-P. 1996. Pathway analysis, engineering, and physiological considerations for redirecting central metabolism. Biotechnol Bioeng 52:129-140.
Mailinger W, Baumeister A, Reuss M, Rizzi M. 1998. Rapid and highly automated determination of adenine and pyridine nucleotides in extracts of Saccharomyces cerevisiae using a micro-robotic sample preparation-HPLC system. J Biotechnol 63:155-166.
Meyer S, Noisommit-Rizzi N, Reuss M, Neubauer P. 1999. Optimized analysis of intracellular adenosine and guanosine phosphates in Escherichia coli. Anal Biochem 271(1):43-52.
Schaefer U, Boos W, Takors R, Weuster-Botz, D. 1999. Automated sampling device for monitoring intracellular metabolite dynamics. Anal Biochem 270:88-96.
Shastry MC, Luck SD, Roder H. 1998. A continuous-flow capillary mixing method to monitor reactions on the microsecond time scale. Biophys J 74:2714-2721.
Theobald U. 1995. Untersuchungen zur Dynamik des Crabtree-Effektes. Ph.D. thesis. Stuttgart, Germany: Universität Stuttgart.
Theobald U, Mailinger W, Reuss M, Rizzi M. 1993. In vivo analysis of glucose-induced fast changes in yeast adenine nucleotide pool applying a rapid sampling technique. Anal Biochem 214:31-37.
Theobald U, Mailinger W, Rizzi M, Reuss M. 1997. In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae. I. Experimental observations. Biotechnol Bioeng 55:305-316.
Weuster-Botz D. 1997. Sampling tube device for monitoring intracellular metabolite dynamics. Anal Biochem 246:225-233.
Zscherp C, Barth A. 2001. Reaction-induced infrared difference spectroscopy for the study of protein reaction mechanisms. Biochemistry 40:1875-1883.