ZHANG, Yiwei ; University of Luxembourg > Faculty of Science, Technology and Medicine > Department of Physics and Materials Science > Team Etienne FODOR
FODOR, Etienne ; University of Luxembourg > Faculty of Science, Technology and Medicine (FSTM) > Department of Physics and Materials Science (DPHYMS)
External co-authors :
yes
Language :
English
Title :
Pulsating Active Matter
Publication date :
2023
Journal title :
Physical Review Letters
ISSN :
0031-9007
eISSN :
1079-7114
Publisher :
American Physical Society, New York, United States - New York
M. C. Marchetti, J. F. Joanny, S. Ramaswamy, T. B. Liverpool, J. Prost, M. Rao, and R. A. Simha, Hydrodynamics of soft active matter, Rev. Mod. Phys. 85, 1143 (2013). RMPHAT 0034-6861 10.1103/RevModPhys.85.1143
J. O'Byrne, Y. Kafri, J. Tailleur, and F. van Wijland, Time irreversibility in active matter, from micro to macro, Nat. Rev. Phys. 4, 167 (2022). 2522-5820 10.1038/s42254-021-00406-2
E. Fodor, R. L. Jack, and M. E. Cates, Irreversibility and biased ensembles in active matter: Insights from stochastic thermodynamics, Annu. Rev. Condens. Matter Phys. 13, 215 (2022). ARCMCX 1947-5454 10.1146/annurev-conmatphys-031720-032419
H. Chaté, Dry aligning dilute active matter, Annu. Rev. Condens. Matter Phys. 11, 189 (2020). ARCMCX 1947-5454 10.1146/annurev-conmatphys-031119-050752
M. E. Cates and J. Tailleur, Motility-induced phase separation, Annu. Rev. Condens. Matter Phys. 6, 219 (2015). ARCMCX 1947-5454 10.1146/annurev-conmatphys-031214-014710
R. Ni, M. A. C. Stuart, and M. Dijkstra, Pushing the glass transition towards random close packing using self-propelled hard spheres, Nat. Commun. 4, 2074 (2013). NCAOBW 2041-1723 10.1038/ncomms3074
L. Berthier, E. Flenner, and G. Szamel, Glassy dynamics in dense systems of active particles, J. Chem. Phys. 150, 200901 (2019). JCPSA6 0021-9606 10.1063/1.5093240
D. Bi, J. H. Lopez, J. M. Schwarz, and M. L. Manning, A density-independent rigidity transition in biological tissues, Nat. Phys. 11, 1074 (2015). NPAHAX 1745-2473 10.1038/nphys3471
D. Bi, X. Yang, M. C. Marchetti, and M. L. Manning, Motility-driven glass and jamming transitions in biological tissues, Phys. Rev. X 6, 021011 (2016). PRXHAE 2160-3308 10.1103/PhysRevX.6.021011
S. Zehnder, M. Suaris, M. Bellaire, and T. Angelini, Cell volume fluctuations in MDCK monolayers, Biophys. J. 108, 247 (2015). BIOJAU 0006-3495 10.1016/j.bpj.2014.11.1856
R. Thiagarajan, A. Bhat, G. Salbreux, M. M. Inamdar, and D. Riveline, Pulsations and flows in tissues as two collective dynamics with simple cellular rules, iScience 25, 105053 (2022). 10.1016/j.isci.2022.105053
A. C. Martin, M. Kaschube, and E. F. Wieschaus, Pulsed contractions of an actin-myosin network drive apical constriction, Nature (London) 457, 495 (2009). NATUAS 0028-0836 10.1038/nature07522
J. Solon, A. Kaya-Copur, J. Colombelli, and D. Brunner, Pulsed forces timed by a ratchet-like mechanism drive directed tissue movement during dorsal closure, Cell 137, 1331 (2009). CELLB5 0092-8674 10.1016/j.cell.2009.03.050
S. Armon, M. S. Bull, A. Aranda-Diaz, and M. Prakash, Ultrafast epithelial contractions provide insights into contraction speed limits and tissue integrity, Proc. Natl. Acad. Sci. U.S.A. 115, E10333 (2018). PNASA6 0027-8424 10.1073/pnas.1805621115
X. Serra-picamal, V. Conte, R. Vincent, E. Anon, D. T. Tambe, E. Bazellieres, J. P. Butler, J. J. Fredberg, and X. Trepat, Mechanical waves during tissue expansion, Nat. Phys. 8, 628 (2012). NPAHAX 1745-2473 10.1038/nphys2355
S. Tlili, E. Gauquelin, B. Li, O. Cardoso, B. Ladoux, H. Delanoë-Ayari, and F. Graner, Collective cell migration without proliferation: Density determines cell velocity and wave velocity, R. Soc. Open Sci. 5, 172421 (2018). 10.1098/rsos.172421
V. Petrolli, M. Le Goff, M. Tadrous, K. Martens, C. Allier, O. Mandula, L. Hervé, S. Henkes, R. Sknepnek, T. Boudou, G. Cappello, and M. Balland, Confinement-induced transition between wavelike collective cell migration modes, Phys. Rev. Lett. 122, 168101 (2019). PRLTAO 0031-9007 10.1103/PhysRevLett.122.168101
G. Peyret, R. Mueller, J. d'Alessandro, S. Begnaud, P. Marcq, R.-M. Mège, J. M. Yeomans, A. Doostmohammadi, and B. Ladoux, Sustained oscillations of epithelial cell sheets, Biophys. J. 117, 464 (2019). BIOJAU 0006-3495 10.1016/j.bpj.2019.06.013
N. Hino, L. Rossetti, A. Marín-Llauradó, K. Aoki, X. Trepat, M. Matsuda, and T. Hirashima, Erk-mediated mechanochemical waves direct collective cell polarization, Dev. Cell 53, 646 (2020). 1534-5807 10.1016/j.devcel.2020.05.011
D. Boocock, N. Hino, N. Ruzickova, T. Hirashima, and E. Hannezo, Theory of mechanochemical patterning and optimal migration in cell monolayers, Nat. Phys. 17, 267 (2021). NPAHAX 1745-2473 10.1038/s41567-020-01037-7
C.-P. Heisenberg and Y. Bellaïche, Forces in tissue morphogenesis and patterning, Cell 153, 948 (2013). CELLB5 0092-8674 10.1016/j.cell.2013.05.008
A. Bailles, C. Collinet, J.-M. Philippe, E. M. Pierre-François Lenne, and T. Lecuit, Genetic induction and mechanochemical propagation of a morphogenetic wave, Nature (London) 572, 467 (2019). NATUAS 0028-0836 10.1038/s41586-019-1492-9
A. Bailles, E. W. Gehrels, and T. Lecuit, Mechanochemical principles of spatial and temporal patterns in cells and tissues, Annu. Rev. Cell Dev. Biol. 38, 321 (2022). ARDBF8 1081-0706 10.1146/annurev-cellbio-120420-095337
A. Karma, Spiral breakup in model equations of action potential propagation in cardiac tissue, Phys. Rev. Lett. 71, 1103 (1993). PRLTAO 0031-9007 10.1103/PhysRevLett.71.1103
J. Christoph, M. Chebbok, C. Richter, J. Schröder-Schetelig, P. Bittihn, S. Stein, I. Uzelac, F. H. Fenton, G. Hasenfuß, R. F. G. Jr., and S. Luther, Electromechanical vortex filaments during cardiac fibrillation, Nature (London) 555, 667 (2018). NATUAS 0028-0836 10.1038/nature26001
A. Molavi Tabrizi, A. Mesgarnejad, M. Bazzi, S. Luther, J. Christoph, and A. Karma, Spatiotemporal organization of electromechanical phase singularities during high-frequency cardiac arrhythmias, Phys. Rev. X 12, 021052 (2022). PRXHAE 2160-3308 10.1103/PhysRevX.12.021052
A. Karma, Physics of cardiac arrhythmogenesis, Annu. Rev. Condens. Matter Phys. 4, 313 (2013). ARCMCX 1947-5454 10.1146/annurev-conmatphys-020911-125112
W.-J. Rappel, The physics of heart rhythm disorders, Phys. Rep. 978, 1 (2022). PRPLCM 0370-1573 10.1016/j.physrep.2022.06.003
J. Xu, S. N. Menon, R. Singh, N. B. Garnier, S. Sinha, and A. Pumir, The role of cellular coupling in the spontaneous generation of electrical activity in uterine tissue, PLoS One 10, e0118443 (2015). POLNCL 1932-6203 10.1371/journal.pone.0118443
K. M. Myers and D. Elad, Biomechanics of the human uterus, WIREs Syst. Biol. Med. 9, e1388 (2017). 10.1002/wsbm.1388
S. Armon, M. S. Bull, A. Moriel, H. Aharoni, and M. Prakash, Modeling epithelial tissues as active-elastic sheets reproduce contraction pulses and predict rip resistance, Commun. Phys. 4, 216 (2021). CMPYEL 0868-3166 10.1038/s42005-021-00712-2
K. Dierkes, A. Sumi, J. Solon, and G. Salbreux, Spontaneous oscillations of elastic contractile materials with turnover, Phys. Rev. Lett. 113, 148102 (2014). PRLTAO 0031-9007 10.1103/PhysRevLett.113.148102
S. Banerjee, K. J. C. Utuje, and M. C. Marchetti, Propagating stress waves during epithelial expansion, Phys. Rev. Lett. 114, 228101 (2015). PRLTAO 0031-9007 10.1103/PhysRevLett.114.228101
E. Tjhung and T. Kawasaki, Excitation of vibrational soft modes in disordered systems using active oscillation, Soft Matter 13, 111 (2017). SMOABF 1744-683X 10.1039/C6SM00788K
E. Tjhung and L. Berthier, Discontinuous fluidization transition in time-correlated assemblies of actively deforming particles, Phys. Rev. E 96, 050601(R) (2017). PRESCM 2470-0045 10.1103/PhysRevE.96.050601
Y. Togashi, Modeling of nanomachine/micromachine crowds: Interplay between the internal state and surroundings, J. Phys. Chem. B 123, 1481 (2019). JPCBFK 1520-6106 10.1021/acs.jpcb.8b10633
Y. Koyano, H. Kitahata, and A. S. Mikhailov, Diffusion in crowded colloids of particles cyclically changing their shapes, Europhys. Lett. 128, 40003 (2019). EULEEJ 0295-5075 10.1209/0295-5075/128/40003
N. Oyama, T. Kawasaki, H. Mizuno, and A. Ikeda, Glassy dynamics of a model of bacterial cytoplasm with metabolic activities, Phys. Rev. Res. 1, 032038(R) (2019). PPRHAI 2643-1564 10.1103/PhysRevResearch.1.032038
See Supplemental Material at http://link.aps.org/supplemental/10.1103/PhysRevLett.131.238302 for details on analytical derivations and numerical simulations, including Refs. [40,41], and for movies of some numerical simulations corresponding to the snapshots shown in Fig. 1.
D. S. Dean, Langevin equation for the density of a system of interacting Langevin processes, J. Phys. A 29, 24 (1996). JPHAC5 0305-4470 10.1088/0305-4470/29/24/001
L. B. Cai, H. Chaté, Y. Q. Ma, and X. Q. Shi, Dynamical subclasses of dry active nematics, Phys. Rev. E 99, 010601(R) (2019). PRESCM 2470-0045 10.1103/PhysRevE.99.010601
A. M. Turing, The chemical basis of morphogenesis, Philos. Trans. R. Soc. B Biol. Sci. 237, 37 (1952). 10.1098/rstb.1952.0012
S. Kondo and T. Miura, Reaction-diffusion model as a framework for understanding biological pattern formation, Science 329, 1616 (2010). SCIEAS 0036-8075 10.1126/science.1179047
A. Ninarello, L. Berthier, and D. Coslovich, Models and algorithms for the next generation of glass transition studies, Phys. Rev. X 7, 021039 (2017). PRXHAE 2160-3308 10.1103/PhysRevX.7.021039
C. Brito, E. Lerner, and M. Wyart, Theory for swap acceleration near the glass and jamming transitions for continuously polydisperse particles, Phys. Rev. X 8, 031050 (2018). PRXHAE 2160-3308 10.1103/PhysRevX.8.031050
J. A. Acebrón, L. L. Bonilla, C. J. Pérez Vicente, F. Ritort, and R. Spigler, The kuramoto model: A simple paradigm for synchronization phenomena, Rev. Mod. Phys. 77, 137 (2005). RMPHAT 0034-6861 10.1103/RevModPhys.77.137
Q. Ouyang and J.-M. Flesselles, Transition from spirals to defect turbulence driven by a convective instability, Nature (London) 379, 143 (1996). NATUAS 0028-0836 10.1038/379143a0
I. S. Aranson and L. Kramer, The world of the complex Ginzburg-Landau equation, Rev. Mod. Phys. 74, 99 (2002). RMPHAT 0034-6861 10.1103/RevModPhys.74.99
J. Howard, S. W. Grill, and J. S. Bois, Turing's next steps: The mechanochemical basis of morphogenesis, Nat. Rev. Mol. Cell Biol. 12, 392 (2011). NRMCBP 1471-0072 10.1038/nrm3120
P. Recho, A. Hallou, and E. Hannezo, Theory of mechanochemical patterning in biphasic biological tissues, Proc. Natl. Acad. Sci. U.S.A. 116, 5344 (2019). PNASA6 0027-8424 10.1073/pnas.1813255116
M. L. Manning, Essay: Collections of deformable particles present exciting challenges for soft matter and biological physics, Phys. Rev. Lett. 130, 130002 (2023). PRLTAO 0031-9007 10.1103/PhysRevLett.130.130002
R. Mueller, J. M. Yeomans, and A. Doostmohammadi, Emergence of active nematic behavior in monolayers of isotropic cells, Phys. Rev. Lett. 122, 048004 (2019). PRLTAO 0031-9007 10.1103/PhysRevLett.122.048004
B. Loewe, M. Chiang, D. Marenduzzo, and M. C. Marchetti, Solid-liquid transition of deformable and overlapping active particles, Phys. Rev. Lett. 125, 038003 (2020). PRLTAO 0031-9007 10.1103/PhysRevLett.125.038003
S.-Z. Lin, M. Merkel, and J.-F. Rupprecht, Tissue fluidization by cell-shape-controlled active stresses, arXiv:2204.05407.
S. Luther, F. H. Fenton, B. G. Kornreich, A. Squires, P. Bittihn, D. Hornung, M. Zabel, J. Flanders, A. Gladuli, L. Campoy, E. M. Cherry, G. Luther, G. Hasenfuss, V. I. Krinsky, A. Pumir, R. F. G. Jr, and E. Bodenschatz, Low-energy control of electrical turbulence in the heart, Nature (London) 475, 235 (2011). NATUAS 0028-0836 10.1038/nature10216
N. DeTal, A. Kaboudian, and F. H. Fenton, Terminating spiral waves with a single designed stimulus: Teleportation as the mechanism for defibrillation, Proc. Natl. Acad. Sci. U.S.A. 119, e2117568119 (2022). PNASA6 0027-8424 10.1073/pnas.2117568119