Reference : The Microbiome Modeling Toolbox: from microbial interactions to personalized microbia... |
Scientific journals : Article | |||
Life sciences : Microbiology Life sciences : Multidisciplinary, general & others | |||
Computational Sciences; Systems Biomedicine | |||
http://hdl.handle.net/10993/37866 | |||
The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities | |
English | |
Baldini, Federico ![]() | |
Heinken, Almut Katrin ![]() | |
Heirendt, Laurent ![]() | |
Magnusdottir, Stefania [] | |
Fleming, Ronan ![]() | |
Thiele, Ines ![]() | |
21-Nov-2018 | |
Bioinformatics | |
Oxford University Press | |
The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities | |
Yes (verified by ORBilu) | |
International | |
1367-4803 | |
1367-4811 | |
Oxford | |
United Kingdom | |
[en] The application of constraint-based modeling to functionally analyze metagenomic data has been limited so far, partially due to the absence of suitable toolboxes.
To address this gap, we created a comprehensive toolbox to model i) microbe-microbe and host-microbe metabolic interactions, and ii) microbial communities using microbial genome-scale metabolic reconstructions and metagenomic data. The Microbiome Modeling Toolbox extends the functionality of the COBRA Toolbox. The Microbiome Modeling Toolbox and the tutorials at https://git.io/microbiomeModelingToolbox. | |
http://hdl.handle.net/10993/37866 | |
10.1093/bioinformatics/bty941 |
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