Article (Scientific journals)
ChIP-seq profiling of the active chromatin marker H3K4me3 and PPARγ, CEBPα and LXR target genes in human SGBS adipocytes
Galhardo, Mafalda Sofia; Sinkkonen, Lasse; Berninger, Philipp et al.
2014In Genomics Data, 2, p. 230-236
Peer reviewed
 

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Abstract :
[en] Transcription factors (TFs) represent key factors to establish a cellular phenotype. It is known that several TFs could play a role in disease, yet less is known so far how their targets overlap. We focused here on identifying the most highly induced TFs and their putative targets during human adipogenesis. Applying chromatin immunoprecipitation coupled with deep sequencing (ChIP-Seq) in the human SGBS pre-adipocyte cell line, we identified genes with binding sites in their vicinity for the three TFs studied, PPARγ, CEBPα and LXR. Here we describe the experimental design and quality controls in detail for the deep sequencing data and related results published by Galhardo et al. in Nucleic Acids Research 2014 [1] associated with the data uploaded to NCBI Gene Expression Omnibus ().
Disciplines :
Life sciences: Multidisciplinary, general & others
Author, co-author :
Galhardo, Mafalda Sofia ;  University of Luxembourg > Faculty of Science, Technology and Communication (FSTC) > Life Science Research Unit
Sinkkonen, Lasse  ;  University of Luxembourg > Faculty of Science, Technology and Communication (FSTC) > Life Science Research Unit
Berninger, Philipp
Lin, Jake ;  University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB)
Sauter, Thomas ;  University of Luxembourg > Faculty of Science, Technology and Communication (FSTC) > Life Science Research Unit
Heinäniemi, Merja
Language :
English
Title :
ChIP-seq profiling of the active chromatin marker H3K4me3 and PPARγ, CEBPα and LXR target genes in human SGBS adipocytes
Publication date :
December 2014
Journal title :
Genomics Data
Volume :
2
Pages :
230-236
Peer reviewed :
Peer reviewed
Available on ORBilu :
since 02 October 2014

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