[en] In this work, we present a software platform for the visualization of metabolic models, which is implemented as a plug-in for the open-source metabolic engineering (ME) platform OptFlux. The tools provided by this plug-in allow the visualization of the models (or parts of the models) combined with the results from operations applied over these models, mainly regarding phenotype simulation, strain optimization and pathway analysis. The tool provides a generic input/ output framework that can import/ export layouts from different formats used by other tools, namely XGMML and SBML. Thus, this work provides a bridge between network visualization and ME.
Disciplines :
Sciences informatiques
Auteur, co-auteur :
NORONHA, Alberto ; University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB)
Vilaça, Paulo; Silico Life
Rocha, Miguel; University of Minho > CCTC, School of Engineering
Langue du document :
Anglais
Titre :
Network Visualization Tools to Enhance Metabolic Engineering Platforms
Date de publication/diffusion :
2013
Nom de la manifestation :
7th International Conference on Practical Applications of Computational Biology & Bioinformatics
Lieu de la manifestation :
Salamanca, Espagne
Date de la manifestation :
from 22-05-2013 to 25-05-2013
Titre de l'ouvrage principal :
7th International Conference on Practical Applications of Computational Biology & Bioinformatics
Maison d'édition :
Springer International Publishing
ISBN/EAN :
978-3-319-00577-5
Collection et n° de collection :
Advances in Intelligent Systems and Computing; 222
