Article (Scientific journals)
A mathematical model of metabolism and regulation provides a systems-level view of how Escherichia coli responds to oxygen
Ederer, M; Steinsiek, S; Stagge, S et al.
2014In Frontiers in Microbiology, 5 (124)
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Abstract :
[en] The efficient redesign of bacteria for biotechnological purposes, such as biofuel production, waste disposal or specific biocatalytic functions, requires a quantitative systems-level understanding of energy supply, carbon, and redox metabolism. The measurement of transcript levels, metabolite concentrations and metabolic fluxes per se gives an incomplete picture. An appreciation of the interdependencies between the different measurement values is essential for systems-level understanding. Mathematical modeling has the potential to provide a coherent and quantitative description of the interplay between gene expression, metabolite concentrations, and metabolic fluxes. Escherichia coli undergoes major adaptations in central metabolism when the availability of oxygen changes. Thus, an integrated description of the oxygen response provides a benchmark of our understanding of carbon, energy, and redox metabolism. We present the first comprehensive model of the central metabolism of E. coli that describes steady-state metabolism at different levels of oxygen availability. Variables of the model are metabolite concentrations, gene expression levels, transcription factor activities, metabolic fluxes, and biomass concentration. We analyze the model with respect to the production capabilities of central metabolism of E. coli. In particular, we predict how precursor and biomass concentration are affected by product formation. - See more at: http://journal.frontiersin.org/Journal/10.3389/fmicb.2014.00124/abstract#sthash.Ocu5zSDe.dpuf
Disciplines :
Life sciences: Multidisciplinary, general & others
Author, co-author :
Ederer, M
Steinsiek, S
Stagge, S
Rolfe, MD
Ter Beek, A
Knies, D
Teixeira de Mattos, MJ
SAUTER, Thomas ;  University of Luxembourg > Faculty of Science, Technology and Communication (FSTC) > Life Science Research Unit
Green, J
Poole, RK
Bettenbrock, K
Sawodny, O
Language :
English
Title :
A mathematical model of metabolism and regulation provides a systems-level view of how Escherichia coli responds to oxygen
Publication date :
2014
Journal title :
Frontiers in Microbiology
ISSN :
1664-302X
Publisher :
Frontiers Research Foundation, Lausanne, Switzerland
Volume :
5
Issue :
124
Peer reviewed :
Peer Reviewed verified by ORBi
Available on ORBilu :
since 31 March 2014

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