Article (Scientific journals)
Mass conserved elementary kinetics is sufficient for the existence of a non-equilibrium steady state concentration.
Fleming, Ronan MT; Thiele, Ines
2012In Journal of Theoretical Biology, 314, p. 173-181
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Keywords :
Anaerobiosis; Enzymes/metabolism; Glycolysis; Kinetics; Models, Biological; Molecular Weight; Thermodynamics; Trypanosoma brucei brucei/metabolism
Abstract :
[en] Living systems are forced away from thermodynamic equilibrium by exchange of mass and energy with their environment. In order to model a biochemical reaction network in a non-equilibrium state one requires a mathematical formulation to mimic this forcing. We provide a general formulation to force an arbitrary large kinetic model in a manner that is still consistent with the existence of a non-equilibrium steady state. We can guarantee the existence of a non-equilibrium steady state assuming only two conditions; that every reaction is mass balanced and that continuous kinetic reaction rate laws never lead to a negative molecule concentration. These conditions can be verified in polynomial time and are flexible enough to permit one to force a system away from equilibrium. With expository biochemical examples we show how reversible, mass balanced perpetual reaction(s), with thermodynamically infeasible kinetic parameters, can be used to perpetually force various kinetic models in a manner consistent with the existence of a steady state. Easily testable existence conditions are foundational for efforts to reliably compute non-equilibrium steady states in genome-scale biochemical kinetic models.
Disciplines :
Life sciences: Multidisciplinary, general & others
External co-authors :
no
Language :
English
Title :
Mass conserved elementary kinetics is sufficient for the existence of a non-equilibrium steady state concentration.
Publication date :
2012
Journal title :
Journal of Theoretical Biology
ISSN :
1095-8541
Publisher :
Elsevier, United States
Volume :
314
Pages :
173-181
Peer reviewed :
Peer Reviewed verified by ORBi
Commentary :
Copyright (c) 2012 Elsevier Ltd. All rights reserved.
Available on ORBilu :
since 12 December 2013

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