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See detailMaaS4All Project Report
Bandiera, Claudia UL; Cisterna, Carolina UL; Viti, Francesco UL

Report (2021)

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See detailMachine learning applied to higher order functional representations of omics data reveals biological pathways associated with Parkinson‘s Disease
Gómez de Lope, Elisa UL; Glaab, Enrico UL

Poster (2022, September 18)

Background: Despite the increasing prevalence of Parkinson’s Disease (PD) and research efforts to understand its underlying molecular pathogenesis, early diagnosis of PD remains a challenge. Machine ... [more ▼]

Background: Despite the increasing prevalence of Parkinson’s Disease (PD) and research efforts to understand its underlying molecular pathogenesis, early diagnosis of PD remains a challenge. Machine learning analysis of blood-based omics data is a promising non-invasive approach to finding molecular fingerprints associated with PD that may enable an early and accurate diagnosis. Description: We applied several machine learning classification methods to public omics data from PD case/control studies. We used aggregation statistics and Pathifier’s pathway deregulation scores to generate higher order functional representations of the data such as pathway-level features. The models’ performance and most relevant predictive features were compared with individual feature level predictors. The resulting diagnostic models from individual features and Pathifier’s pathway deregulation scores achieve significant Area Under the Curve (AUC, a receiver operating characteristic curve) scores for both cross-validation and external testing. Furthermore, we identify plausible biological pathways associated with PD diagnosis. Conclusions: We have successfully built machine learning models at pathway-level and single-feature level to study blood-based omics data for PD diagnosis. Plausible biological pathway associations were identified. Furthermore, we show that pathway deregulation scores can serve as robust and biologically interpretable predictors for PD. [less ▲]

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See detailMachine learning techniques for atmospheric pollutant monitoring
Sainlez, Matthieu UL; Heyen, Georges

Poster (2012, January 27)

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See detailMachine Learning to Geographically Enrich Understudied Sources: A Conceptual Approach
Viola, Lorella UL; Verheul, Jaap

in Rocha, Ana; Steels, Luc; van den Herik, Jaap (Eds.) Proceedings of the 12th International Conference on Agents and Artificial Intelligence - Volume 1: ARTIDIGH (2020)

This paper discusses the added value of applying machine learning (ML) to contextually enrich digital collections. In this study, we employed ML as a method to geographically enrich historical datasets ... [more ▼]

This paper discusses the added value of applying machine learning (ML) to contextually enrich digital collections. In this study, we employed ML as a method to geographically enrich historical datasets. Specifically, we used a sequence tagging tool (Riedl and Padó 2018) which implements TensorFlow to perform NER on a corpus of historical immigrant newspapers. Afterwards, the entities were extracted and geocoded. The aim was to prepare large quantities of unstructured data for a conceptual historical analysis of geographical references. The intention was to develop a method that would assist researchers working in spatial humanities, a recently emerged interdisciplinary field focused on geographic and conceptual space. Here we describe the ML methodology and the geocoding phase of the project, focussing on the advantages and challenges of this approach, particularly for humanities scholars. We also argue that, by choosing to use largely neglected sources such as immigrant newspapers (a lso known as ethnic newspapers), this study contributes to the debate about diversity representation and archival biases in digital practices. [less ▲]

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See detailMAgNET: A Graph U-Net Architecture for Mesh-Based Simulations
Deshpande, Saurabh UL; Bordas, Stéphane UL; Lengiewicz, Jakub UL

E-print/Working paper (2023)

In many cutting-edge applications, high-fidelity computational models prove too slow to be practical and are thus replaced by much faster surrogate models. Recently, deep learning techniques have become ... [more ▼]

In many cutting-edge applications, high-fidelity computational models prove too slow to be practical and are thus replaced by much faster surrogate models. Recently, deep learning techniques have become increasingly important in accelerating such predictions. However, they tend to falter when faced with larger and more complex problems. Therefore, this work introduces MAgNET: Multi-channel Aggregation Network, a novel geometric deep learning framework designed to operate on large-dimensional data of arbitrary structure (graph data). MAgNET is built upon the MAg (Multichannel Aggregation) operation, which generalizes the concept of multi-channel local operations in convolutional neural networks to arbitrary non-grid inputs. The MAg layers are interleaved with the proposed novel graph pooling/unpooling operations to form a graph U-Net architecture that is robust and can handle arbitrary complex meshes, efficiently performing supervised learning on large- dimensional graph-structured data. We demonstrate the predictive capabilities of MAgNET for several non-linear finite element simulations and provide open-source datasets and codes to facilitate future research. [less ▲]

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See detailMaintenance location routing for rolling stock under line and fleet planning uncertainty
Tönissen, Denise; Arts, Joachim UL; Shen, Zuo-Jun

in Transportation Science (2019), 53(5), 1252-1270

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See detailmaintenance service logistics
Arts, Joachim UL; Basten, Rob; Geert-Jan, Van Houtum

in Operations Logistics and Supply Chain Management (2019)

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See detailMaking the Case for Evidence-based Standardization of Data Privacy and Data Protection Visual Indicators
Rossi, Arianna UL; Lenzini, Gabriele UL

in Journal of Open Access to Law (2020), 8(1),

Lately, icons have witnessed a growing wave of interest in the view of enhancing transparency and clarity of data processing practices in mandated disclosures. Although benefits in terms of ... [more ▼]

Lately, icons have witnessed a growing wave of interest in the view of enhancing transparency and clarity of data processing practices in mandated disclosures. Although benefits in terms of comprehensibility, noticeability, navigability of the information and user’s attention and memorization can be expected, they should also be supported by decisive empirical evidence about the efficacy of the icons in specific contexts. Misrepresentation, oversimplification, and improper salience of certain aspects over others are omnipresent risks that can drive data subjects to wrong conclusions. Cross-domain and international standardization of visual means also poses a serious challenge: if on the one hand developing standards is necessary to ensure widespread recognition and comprehension, each domain and application presents unique features that can be hardly established, and imposed, in a top-down manner. This article critically discusses the above issues and identifies relevant open questions for scientific research. It also provides concrete examples and practical suggestions for researchers and practitioners that aim to implement transparency-enhancing icons in the spirit of the General Data Protection Regulation (GDPR). [less ▲]

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See detailManagement of product characteristics uncertainty based on Formal Logic and Characteristics Properties Model
Dantan, Jean-Yves; Qureshi, Ahmed Jawad UL; Antoine, J. et al

in CIRP Annals - Manufacturing Technology (2013), 62(1),

Uncertainty in product characteristics is ubiquitous in any engineering system at all the stages of product life-cycle. Considering uncertainty from different sources during the product design phase is ... [more ▼]

Uncertainty in product characteristics is ubiquitous in any engineering system at all the stages of product life-cycle. Considering uncertainty from different sources during the product design phase is critical to its reliable performance. This paper presents a framework integrating the uncertainty propagation through different product characteristics and its effect on product properties. The framework consists of three main parts: a descriptive model based on formal logic and characteristics properties model; a mathematical implementation through set theory and probabilistic approach; and an algorithm for design space evaluation and tolerancing. The application of framework is demonstrated through an industrial case study. [less ▲]

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See detailA Markov Chain dynamic model for trip generation and distribution based on CDR
Di Donna, Simone Aniello UL; Cantelmo, Guido UL; Viti, Francesco UL

in Proceedings of the MT-ITS Conference (2015, June)

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See detailA Markov chain dynamic model for trip generation and distribution based on CDR
Viti, Francesco UL; Cantelmo, Guido UL

in Periodica Polytechnica Transportation Engineering (2015)

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See detailA Markov Chain Monte Carlo Approach for Estimating Daily Activity Patterns
Scheffer, Ariane Hélène Marie UL; Bandiera, Claudia UL; Cipriani, Ernesto et al

Scientific Conference (2021, February)

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See detailA Markov Chain Monte Carlo Approach for Estimating Daily Activity Patterns
Scheffer, Ariane Hélène Marie UL; Bandiera, Claudia; Cantelmo, Guido et al

Poster (2019, January)

Determining the purpose of trips brings is a fundamental information to evaluate travel demand during the day and to predict longer-term impacts on the population’s travel behavior. The concept of tours ... [more ▼]

Determining the purpose of trips brings is a fundamental information to evaluate travel demand during the day and to predict longer-term impacts on the population’s travel behavior. The concept of tours is the most suited to consider the value of a daily scheduling of individuals and travel interdependencies. However, the meticulous care required for both collecting data of high quality and interpret results of advanced demand models are frequently considered as major drawbacks. The objective of this study is to incorporate into a standard trip-based model some inherent concepts of activity-based models in order to enhance the representation of travel behavior. The main focus of this work is to infer, employing utility theory, the trip purpose of a population, at a zonal level. Making use of Markov Chain Monte Carlo, a set of parameters is estimated in order to retrieve tour-based primitives of the demand. The main advantage of this methodology is the low requirements in terms of data, as no individual information are used, and the good interpretation of the model. Estimated parameters of the priors set a utility-based probability function for departure time, which allows to have a dynamic overview of the demand. In order to account for the tour consistency of travel decisions, a duration constraint is added to the model. The proposed model is applied to the region of Luxembourg city and the results show the potential of the methodologies for dividing an observed demand based on the activity at destination. [less ▲]

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See detailA mass conservative Kalman filter algorithm for thermo-computational fluid dynamics
Introini, Carolina; Baroli, Davide UL; Lorenzi, Stefano et al

in Materials (n.d.)

Computational fluid-dynamics (CFD) is of wide relevance in engineering and science, due to its capability of simulating the three-dimensional flow at various scales. However, the suitability of a given ... [more ▼]

Computational fluid-dynamics (CFD) is of wide relevance in engineering and science, due to its capability of simulating the three-dimensional flow at various scales. However, the suitability of a given model depends on the actual scenarios which are encountered in practice. This challenge of model suitability and calibration could be overcome by a dynamic integration of measured data into the simulation. This paradigm is known as data-driven assimilation (DDA). In this paper, the study is devoted to Kalman filtering, a Bayesian approach, applied to Reynolds-Averaged Navier-Stokes (RANS) equations for turbulent flow. The integration of the Kalman estimator into the PISO segregated scheme was recently investigated by (1). In this work, this approach is extended to the PIMPLE segregated method and to the ther- modynamic analysis of turbulent flow, with the addition of a sub-stepping procedure that ensures mass conservation at each time step and the com- patibility among the unknowns involved. The accuracy of the algorithm is verified with respect to the heated lid-driven cavity benchmark, incorporat- ing also temperature observations, comparing the augmented prediction of the Kalman filter with the CFD solution obtained on a very fine grid. [less ▲]

Detailed reference viewed: 139 (7 UL)
See detailMathematical Modelling of Flux Decline due to Concentration Polarisation and Cake Layer Formation in Crossflow Filtration Systems
Hale, Jack UL; Li, Qilin; Harris, Alison et al

Scientific Conference (2007, May)

Crossflow membrane filtration is an effective way of removing both colloidal and dissolved organic matter from contaminated water supplies. Two phenomena domimate solute flux in crossflow systems ... [more ▼]

Crossflow membrane filtration is an effective way of removing both colloidal and dissolved organic matter from contaminated water supplies. Two phenomena domimate solute flux in crossflow systems; concentration polarization and cake layer formation. Many innovative mathematical models for predicting both flux decline and quasi-steady state flux have been produced in the literature. However, limited regime applicability and conflicting physical predictions have made choosing optimal performance parameters in design a challenging process. An overview of the current field of models was undertaken, including an assessment of mathematical assumptions, numerical computation workload and number and complexity of system constants. A new model incorporating viscosity dependence on concentration is developed for the concentration polarization regime. Preliminary results will also be presented from a Monte Carlo based molecular dynamics simulation of volume packing fraction in the cake layer regime. The novel aspects of these models will be compared with existing models and the experimental results of our collaborators. Laboratory ultrafiltration tests were undertaken using varying concentrations of Dextran. An outline of future model directions and refinements will be presented. [less ▲]

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See detailMathematical models of circadian Ca2+ oscillations
Neil, D.; Goncalves, Jorge UL; Webb, A.R.

in Proceedings of the eighth International Conference on Systems Biology (2007)

In the model plant Arabidopsis thaliana, the concentration of cytosolic-free Ca2+ ([Ca2+]cyt) oscillates with a circadian rhythm. We are investigating the regulation and role of these oscillations both ... [more ▼]

In the model plant Arabidopsis thaliana, the concentration of cytosolic-free Ca2+ ([Ca2+]cyt) oscillates with a circadian rhythm. We are investigating the regulation and role of these oscillations both experimentally and mathematically. Through systems identification, we have developed simple mathematical models from a single experiment measuring [Ca2+]cyt and the promoter activity of CIRCADIAN CLOCK ASSOCIATED 1 (CCA1). Through validation with 4 contrasting datasets, including a clock-arrhythmic transgenic line (CCA1 overexpressor), we demonstrate the necessity for a light input pathway to regulate basal [Ca2+]cyt levels. [less ▲]

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See detailMathematical relationships between representations of structure in linear interconnected dynamical systems
Yeung, E.; Goncalves, Jorge UL; Sandberg, H. et al

in The proceedings of the 2011 American Control Conference (ACC) (2011)

A dynamical system can exhibit structure on multiple levels. Different system representations can capture different elements of a dynamical system's structure. We consider LTI input-output dynamical ... [more ▼]

A dynamical system can exhibit structure on multiple levels. Different system representations can capture different elements of a dynamical system's structure. We consider LTI input-output dynamical systems and present four representations of structure: complete computational structure, subsystem structure, signal structure, and input output sparsity structure. We then explore some of the mathematical relation ships that relate these different representations of structure. In particular, we show that signal and subsystem structure are fundamentally different ways of representing system structure. A signal structure does not always specify a unique subsystem structure nor does subsystem structure always specify a unique signal structure. We illustrate these concepts with a numerical example. [less ▲]

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See detailMaximum flow of complex manufacturing networks
Omar, Yamila UL; Plapper, Peter UL

in Procedia CIRP (2019)

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See detailMaximum-Entropy Meshfree Method for the Reissner-Mindlin Plate Problem based on a Stabilised Mixed Weak Form
Hale, Jack UL; Baiz, P. M.

Scientific Conference (2012)

Meshless methods, such as the Element Free Galerkin (EFG) method, hold various advantages over mesh-based techniques such as robustness in large-deformation problems and high continuity. The Reissner ... [more ▼]

Meshless methods, such as the Element Free Galerkin (EFG) method, hold various advantages over mesh-based techniques such as robustness in large-deformation problems and high continuity. The Reissner-Mindlin plate model is a particularly popular choice for simulating thin structures. It is well known in the Finite Element and Meshless literature that the simplest numerical treatments of the Reissner-Mindlin model lead to shear-locking which in turn produces erroneous results. This is due to the inability of the approximation functions to satisfy the Kirchoff constraint in the thin-plate limit. A recent advance in the area of meshless approximation schemes are Maximum-Entropy (MaxEnt) approximants. MaxEnt schemes provide a weak Kronecker-delta property on convex node sets which allows the direct imposition of Dirichlet (essential) boundary conditions. In this work, we derive a shear-locking free meshless method using MaxEnt approximants by consider- ing a stabilised mixed weak form. We include a scalar parameter which splits the energy from the shear bilinear form into two parts; the first is formed from the displacement fields only and the second from the independently interpolated shear strain field and the displacement fields. This splitting greatly eases the satisfaction of the LBB stability condition. We then eliminate the independently interpolated shear strain field using a localised projection operator, related to the “volume-averaged pressure” technique, which produces a final system of equations in the original displacement unknowns only. We show the good performance of the method for a variety of test problems. [less ▲]

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See detailMeasure and Failure Cost Analysis: Selecting Risk Treatment Strategies
Gericke, Kilian UL; Klimentew, Lars; Blessing, Lucienne UL

in Proceedings of the 17th International Conference on Engineering Design (2009)

Project Risk Management is used to prevent projects to fail. Despite its proven use, barriers still exist that hinder implementation and use by inexperienced persons. One barrier is the additional effort ... [more ▼]

Project Risk Management is used to prevent projects to fail. Despite its proven use, barriers still exist that hinder implementation and use by inexperienced persons. One barrier is the additional effort required by the process of Project Risk Management itself. An additional barrier is the lack of systematic support of important steps like the selection of an appropriate risk treatment strategy. The decision which strategy to select is a challenging task due to the uncertain character of the addressed issue. The trade-off of the perceived additional efforts caused by a method must be addressed by an enhancement of the cost-benefit ratio of the applied methods and implemented risk treatment measures. Decision making using the proposed Measure and Failure Cost Analysis (MFCA) method enables the Risk Manager to compare the arising costs of different risk treatment strategies caused by an occurring risk and risk treatment measures. It is based on a de-escalation principle which analyzes the course of the impact of an event. The method compares the reaction rate of different strategies and proposes the favorite one. [less ▲]

Detailed reference viewed: 73 (0 UL)