References of "Paul, Soumya 50026860"
     in
Bookmark and Share    
Full Text
Peer Reviewed
See detailAn efficient approach towards the source-target control of Boolean networks
Paul, Soumya UL; Su, Cui UL; Pang, Jun UL et al

in IEEE/ACM Transactions on Computational Biology and Bioinformatics (in press)

We study the problem of computing a minimal subset of nodes of a given asynchronous Boolean network that need to be perturbed in a single-step to drive its dynamics from an initial state to a target ... [more ▼]

We study the problem of computing a minimal subset of nodes of a given asynchronous Boolean network that need to be perturbed in a single-step to drive its dynamics from an initial state to a target steady state (or attractor), which we call the source-target control of Boolean networks. Due to the phenomenon of state-space explosion, a simple global approach that performs computations on the entire network, may not scale well for large networks. We believe that efficient algorithms for such networks must exploit the structure of the networks together with their dynamics. Taking this view, we derive a decomposition-based solution to the minimal source-target control problem which can be significantly faster than the existing approaches on large networks. We then show that the solution can be further optimised if we take into account appropriate information about the source state. We apply our solutions to both real-life biological networks and randomly generated networks, demonstrating the efficiency and efficacy of our approach. [less ▲]

Detailed reference viewed: 43 (2 UL)
Full Text
Peer Reviewed
See detailScalable control of asynchronous Boolean networks
Su, Cui; Paul, Soumya UL; Pang, Jun UL

in Proceedings of 17th International Conference on Computational Methods in Systems Biology (CMSB'19) (2019)

Detailed reference viewed: 27 (0 UL)
Full Text
Peer Reviewed
See detailAlgorithms for the Sequential Reprogramming of Boolean Networks
Mandon, Hugues; Su, Cui; Pang, Jun UL et al

in IEEE/ACM Transactions on Computational Biology and Bioinformatics (2019), 16(5), 1610-1619

Detailed reference viewed: 28 (0 UL)
Full Text
Peer Reviewed
See detailControlling large Boolean networks with single-step perturbations
Baudin, Alexis; Paul, Soumya UL; Su, Cui et al

in Bioinformatics (2019), 35(14), 558-567

Detailed reference viewed: 19 (2 UL)
Full Text
Peer Reviewed
See detailControlling large Boolean networks with temporary and permanent perturbations
Su, Cui; Paul, Soumya UL; Pang, Jun UL

in Proceedings of the 23rd International Symposium on Formal Methods (FM'19) (2019)

Detailed reference viewed: 28 (0 UL)
Full Text
Peer Reviewed
See detailStrategic conversations under imperfect information: Epistemic Message Exchange games
Asher, Nicholas; Paul, Soumya UL

in Journal of Logic, Language and Information (2018), 27(4), 343-385

Detailed reference viewed: 48 (1 UL)
Full Text
Peer Reviewed
See detailOn the Full Control of Boolean Networks
Paul, Soumya UL; Pang, Jun UL; Su, Cui

in Proceedings of the 16th International Conference on Computational Methods in Systems Biology (2018)

Detailed reference viewed: 52 (4 UL)
Full Text
Peer Reviewed
See detailTowards the Existential Control of Boolean Networks: A Preliminary Report
Paul, Soumya UL; Pang, Jun UL; Su, Cui

in Proceedings of the 4th International Symposium on Dependable Software Engineering. Theories, Tools, and Applications (2018)

Detailed reference viewed: 42 (1 UL)
Full Text
Peer Reviewed
See detailA Decomposition-based Approach towards the Control of Boolean Networks
Paul, Soumya UL; Su, Cui; Pang, Jun UL et al

in Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (2018)

Detailed reference viewed: 62 (2 UL)