References of "Pang, Jun 50002807"
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See detailAn efficient approach towards the source-target control of Boolean networks
Paul, Soumya UL; Su, Cui UL; Pang, Jun UL et al

in IEEE/ACM Transactions on Computational Biology and Bioinformatics (in press)

We study the problem of computing a minimal subset of nodes of a given asynchronous Boolean network that need to be perturbed in a single-step to drive its dynamics from an initial state to a target ... [more ▼]

We study the problem of computing a minimal subset of nodes of a given asynchronous Boolean network that need to be perturbed in a single-step to drive its dynamics from an initial state to a target steady state (or attractor), which we call the source-target control of Boolean networks. Due to the phenomenon of state-space explosion, a simple global approach that performs computations on the entire network, may not scale well for large networks. We believe that efficient algorithms for such networks must exploit the structure of the networks together with their dynamics. Taking this view, we derive a decomposition-based solution to the minimal source-target control problem which can be significantly faster than the existing approaches on large networks. We then show that the solution can be further optimised if we take into account appropriate information about the source state. We apply our solutions to both real-life biological networks and randomly generated networks, demonstrating the efficiency and efficacy of our approach. [less ▲]

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See detailAlgorithms for the Sequential Reprogramming of Boolean Networks
Mandon, Hugues; Su, Cui; Pang, Jun UL et al

in IEEE/ACM Transactions on Computational Biology and Bioinformatics (2019), 16(5), 1610-1619

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See detailAn active learning-based approach for location-aware acquaintance inference
Chen, Bo-Heng; Li, Cheng-Te; Chuang, Kun-Ta et al

in Knowledge and Information Systems (2019), 59(3), 539-569

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See detailA graph-based approach to explore relationship between hashtags and images
Zhong, Zhiqiang UL; Zhang, Yang; Pang, Jun UL

in Proceedings of the 20th International Conference on Web Information System Engineering (2019)

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See detailTaming asynchrony for attractor detection in large Boolean networks
Mizera, Andrzej; Pang, Jun UL; Qu, Hongyang et al

in IEEE/ACM Transactions on Computational Biology and Bioinformatics (2019), 16(1), 31-42

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See detailProceedings of the 24th International Conference on Engineering of Complex Computer Systems
Pang, Jun UL; Sun, Jing

Book published by IEEE (2019)

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See detailA new decomposition-based method for detecting attractors in synchronous Boolean networks
Yuan, Qixia; Mizera, Andrzej UL; Pang, Jun UL et al

in Science of Computer Programming (2019), 180

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See detailSequential reprogramming of Boolean networks made practical
Mandon, Hugues; Su, Cui; Haar, Stefan et al

in Proceedings of 17th International Conference on Computational Methods in Systems Biology (CMSB'19) (2019)

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See detailControlling large Boolean networks with single-step perturbations
Baudin, Alexis; Paul, Soumya UL; Su, Cui et al

in Bioinformatics (2019), 35(14), 558-567

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See detailGPU-accelerated steady-state computation of large probabilistic Boolean networks
Mizera, Andrzej; Pang, Jun UL; Yuan, Qixia

in Formal Aspects of Computing (2019), 31(1), 27-46

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See detailScalable control of asynchronous Boolean networks
Su, Cui; Paul, Soumya UL; Pang, Jun UL

in Proceedings of 17th International Conference on Computational Methods in Systems Biology (CMSB'19) (2019)

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See detailControlling large Boolean networks with temporary and permanent perturbations
Su, Cui; Paul, Soumya UL; Pang, Jun UL

in Proceedings of the 23rd International Symposium on Formal Methods (FM'19) (2019)

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See detailOn the Full Control of Boolean Networks
Paul, Soumya UL; Pang, Jun UL; Su, Cui

in Proceedings of the 16th International Conference on Computational Methods in Systems Biology (2018)

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See detailTagvisor: A privacy advisor for sharing hashtags
Zhang, Yang; Humbert, Mathias; Rahman, Tahleen et al

in Proceedings of The Web Conference 2018 (WWW'18) (2018)

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See detailA Decomposition-based Approach towards the Control of Boolean Networks
Paul, Soumya UL; Su, Cui; Pang, Jun UL et al

in Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (2018)

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See detailTowards the Existential Control of Boolean Networks: A Preliminary Report
Paul, Soumya UL; Pang, Jun UL; Su, Cui

in Proceedings of the 4th International Symposium on Dependable Software Engineering. Theories, Tools, and Applications (2018)

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See detailAn Automatic Proving Approach to Parameterized Verification
Li, Yongjian; Duan, Kaiqiang; Jansen, David et al

in ACM Transactions on Computational Logic (2018), 19(4), 1-27

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See detailASSA-PBN 3.0: Analysing Context-Sensitive Probabilistic Boolean Networks
Mizera, Andrzej; Pang, Jun UL; Qu, Hongyang et al

in Proceedings of the 16th International Conference on Computational Methods in Systems Biology (2018)

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See detailL-CMP: an automatic learning-based parameterized verification tool
Cao, Jialun; Li, Yongjian; Pang, Jun UL

in Proceedings of the 33rd ACM/IEEE International Conference on Automated Software Engineering (2018)

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See detailLearning probabilistic models for model checking: an evolutionary approach and an empirical study
Wang, Jingyi; Sun, Jun; Yuan, Qixia et al

in International Journal on Software Tools for Technology Transfer (2018), 20(6), 689-704

Detailed reference viewed: 65 (4 UL)