References of "Nguyen, Thanh-Phuong 50002756"
     in
Bookmark and Share    
Full Text
Peer Reviewed
See detailModel-based clustering reveals vitamin D dependent multi-centrality hubs in a network of vitamin-related proteins
Nguyen, Thanh-Phuong UL; Scotti, Marco; Morine, Melissa J. et al

in BMC Systems Biology (2011), 5(1), 195

Detailed reference viewed: 105 (3 UL)
Peer Reviewed
See detailEM Clustering Based Approach to Decipher Functional Modules in Cross-Talking Signaling systems
Nguyen, Thanh-Phuong UL; Ihekwaba, Adaoha E. C.; Priami, Corrado

in International Journal of Bioscience, Biochemistry and Bioinformatics (2011), 1(1), 1

Detailed reference viewed: 83 (1 UL)
Full Text
Peer Reviewed
See detailInferring pleiotropy by network analysis: linked diseases in the human PPI network
Nguyen, Thanh-Phuong UL; Liu, Wei-Chung; Jordán, Ferenc

in BMC Systems Biology (2011), 5(1), 179

Background: Earlier, we identified proteins connecting different disease proteins in the human protein-protein interaction network and quantified their mediator role. An analysis of the networks of these ... [more ▼]

Background: Earlier, we identified proteins connecting different disease proteins in the human protein-protein interaction network and quantified their mediator role. An analysis of the networks of these mediators shows that proteins connecting heart disease and diabetes largely overlap with the ones connecting heart disease and obesity. Results: We quantified their overlap, and based on the identified topological patterns, we inferred the structural disease-relatedness of several proteins. Literature data provide a functional look of them, well supporting our findings. For example, the inferred structurally important role of the PDZ domain-containing protein GIPC1 in diabetes is supported despite the lack of this information in the Online Mendelian Inheritance in Man database. Several key mediator proteins identified here clearly has pleiotropic effects, supported by ample evidence for their general but always of only secondary importance. Conclusions: We suggest that studying central nodes in mediator networks may contribute to better understanding and quantifying pleiotropy. Network analysis provides potentially useful tools here, as well as helps in improving databases. [less ▲]

Detailed reference viewed: 99 (1 UL)
Peer Reviewed
See detailA quantitative approach to study indirect effects among disease proteins in the human protein interaction network
Nguyen, Thanh-Phuong UL; Jordán, Ferenc

in BMC Systems Biology (2010), 4(1), 103

Detailed reference viewed: 92 (2 UL)
Peer Reviewed
See detailElucidation of functional consequences of signalling pathway interactions
Ihekwaba, Adaoha E. C.; Nguyen, Thanh-Phuong UL; Priami, Corrado

in BMC Bioinformatics (2009), 10(1), 370

Detailed reference viewed: 82 (1 UL)
Peer Reviewed
See detailAn integrative domain-based approach to predicting protein--protein interactions
Nguyen, Thanh-Phuong UL; Ho, Tu-Bao

in Journal of Bioinformatics and Computational Biology (2008), 6(06), 1115--1132

Detailed reference viewed: 82 (2 UL)
Peer Reviewed
See detailConstructing Signal Transduction Networks Using Multiple Signaling Feature Data
Nguyen, Thanh-Phuong UL; Satou, Kenji; Ho, Tu-Bao et al

Scientific Conference (2008)

Detailed reference viewed: 33 (1 UL)
Peer Reviewed
See detailStudy of Protein-Protein Interactions from Multiple Data Sources
Ho, Tu Bao; Nguyen, Thanh-Phuong UL; Tran, Tuan Nam

in Taniar, David (Ed.) Advances in Data Warehousing and Mining (2007)

Detailed reference viewed: 94 (1 UL)
Peer Reviewed
See detailPrediction of Protein-Protein Interactions Using Bayesian Networks
Nguyen, Thanh-Phuong UL; Ho, Tu Bao; Nguyen, Ngoc Binh

in Proceeding of the 2nd International Conference on Knowledge, Information and Creativity Support Systems (KICSS 2007) (2007)

Detailed reference viewed: 33 (2 UL)
Peer Reviewed
See detailA semi-supervised learning approach to disease gene prediction
Nguyen, Thanh-Phuong UL; Ho, Tu Bao

in Proceeding of the IEEE International Conference on Bioinformatics and Biomedicine 2007. (2007)

Detailed reference viewed: 87 (1 UL)
Peer Reviewed
See detailPrediction of domain-domain interactions using inductive logic programming from multiple genome databases
Nguyen, Thanh-Phuong UL; Ho, Tu Bao

in Lecture Notes in Artificial Intelligence LNAI 4265 (2006)

Detailed reference viewed: 84 (1 UL)
Full Text
Peer Reviewed
See detailDiscovering signal transduction networks using signaling domain-domain interactions
Nguyen, Thanh-Phuong UL; Ho, Tu Bao

in Genome Informatics (2006), 17(2), 35--45

Detailed reference viewed: 31 (3 UL)
Peer Reviewed
See detailA Mixed Similarity Measure for Data with Numeric, Symbolic and Ordinal Attributes
Nguyen, Ngoc Binh; Than, Van Cuong; Nguyen, Thanh-Phuong UL et al

in The proceeding of Japan-Vietnam Joint Workshop on Active Mining (Artificial Intelligence I) (2004)

Detailed reference viewed: 57 (1 UL)
Peer Reviewed
See detailA Specification for Underground Tank Monitoring System (UTMS) Using Real-Time Process Algebra (RTPA)
Nguyen, Thanh-Phuong UL; Nguyen, Ngoc Binh

in The procedding of the IEEE RIVF 2004 conference (2004)

Detailed reference viewed: 56 (1 UL)