References of "Mizera, Andrzej 50002677"
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See detailRecent development and biomedical applications of probabilistic Boolean networks
Trairatphisan, Panuwat UL; Mizera, Andrzej UL; Pang, Jun UL et al

in Cell Communication and Signaling (2013), 11(46),

Probabilistic Boolean network (PBN) modelling is a semi-quantitative approach widely used for the study of the topology and dynamic aspects of biological systems. The combined use of rule-based ... [more ▼]

Probabilistic Boolean network (PBN) modelling is a semi-quantitative approach widely used for the study of the topology and dynamic aspects of biological systems. The combined use of rule-based representation and probability makes PBN appealing for large-scale modelling of biological networks where degrees of uncertainty need to be considered. A considerable expansion of our knowledge in the field of theoretical research on PBN can be observed over the past few years, with a focus on network inference, network intervention and control. With respect to areas of applications, PBN is mainly used for the study of gene regulatory networks though with an increasing emergence in signal transduction, metabolic, and also physiological networks. At the same time, a number of computational tools, facilitating the modelling and analysis of PBNs, are continuously developed. A concise yet comprehensive review of the state-of-the-art on PBN modelling is offered in this article, including a comparative discussion on PBN versus similar models with respect to concepts and biomedical applications. Due to their many advantages, we consider PBN to stand as a suitable modelling framework for the description and analysis of complex biological systems, ranging from molecular to physiological levels. [less ▲]

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See detailA balancing act: Parameter estimation for biological models with steady-state measurements
Mizera, Andrzej UL; Pang, Jun UL; Sauter, Thomas UL et al

in Proceedings of 11th Conference on Computational Methods in Systems Biology (CMSB'13) (2013)

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See detailMathematical modelling of the Platelet-Derived Growth Factor (PDGF) signalling pathway
Mizera, Andrzej UL; Pang, Jun UL; Sauter, Thomas UL et al

in Proceedings of 4th Workshop on Computational Models for Cell Processes (CompMod'13) (2013)

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See detailComputational methods for quantitative submodel comparison
Mizera, Andrzej UL; Czeizler, Elena; Petre, Ion

in Katz, Evgeny (Ed.) Biomolecular Information Processing. From Logic Systems to Smart Sensors and Actuators (2012)

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See detailSelf-assembly models of variable resolution
Mizera, Andrzej UL; Czeizler, Eugen; Petre, Ion

in Lecture Notes in Computer Science (2012), 7625

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See detailQuantitative analysis of the self-assembly strategies of intermediate filaments from tetrameric vimentin
Czeizler, Eugen; Mizera, Andrzej UL; Czeizler, Elena et al

in IEEE/ACM Transactions on Computational Biology and Bioinformatics (2012), 9(3), 885-898

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See detailA Boolean Approach for Disentangling the Roles of Submodules to the Global Properties of a Biomodel
Czeizler, Elena; Mizera, Andrzej UL; Petre, Ion

in Fundamenta Informaticae (2012), 116(1-4), 51-63

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See detailMethods for Biochemical Model Decomposition and Quantitative Submodel Comparison
Mizera, Andrzej UL; Czeizler, Elena; Petre, Ion

in Israel Journal of Chemistry (2011), 51(1), 151164

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See detailModelling of ultrasound therapeutic heating and numerical study of the dynamics of the induced heat shock response
Mizera, Andrzej UL; Gambin, Barbara

in Communications in Nonlinear Science & Numerical Simulation (2011), 16(5), 23422349

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See detailA simple mass-action model for the eukaryotic heat shock response and its mathematical validation
Petre, Ion; Mizera, Andrzej UL; Hyder, Claire L. et al

in Natural Computing (2011), 10(1), 595-612

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See detailStochastic modelling of the eukaryotic heat shock response
Mizera, Andrzej UL; Gambin, Barbara

in Journal of Theoretical Biology (2010), 265(3), 455466

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See detailA New Mathematical Model for the Heat Shock Response
Petre, Ion; Mizera, Andrzej UL; Hyder, Claire L. et al

in Condon, Anne; Harel, David; Kok, Joost N. (Eds.) et al Algorithmic Bioprocesses (2009)

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See detailThe Dynamics of Heat Shock Response Induced by Ultr asound Therapeutic Treatment
Mizera, Andrzej UL; Gambin, Barbara

in Awrejcewicz, J.; Kaźmierczak, M.; Mrozowski, J. (Eds.) et al 10th Conference on Dynamical Systems – Theory and Applications, DSTA-2009 (2009)

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See detailTemperature Fields Induced by Low Power Focused Ultrasound in Soft Tissues During Gene Therapy. Numerical Predictions and Experimental Results
Gambin, Barbara; Kujawska, Tamara; Kruglenko, Eleonora et al

in Archives of Acoustics (2009), 34(4), 445459

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See detailComputational heuristics for simplifying a biological model
Petre, Ion; Mizera, Andrzej UL; Back, Ralph-Johan

in Lecture Notes in Computer Science (2009), 5635

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See detailApplying dynamic Bayesian networks to perturbed gene expression data
Norbert, Dojer; Gambin, Anna; Mizera, Andrzej UL et al

in BMC Bioinformatics (2006), 7

Detailed reference viewed: 57 (6 UL)