Reference : Hierarchical representation of supersecondary structures using a graph-theoretical ap...
Scientific journals : Article
Life sciences : Biochemistry, biophysics & molecular biology
http://hdl.handle.net/10993/549
Hierarchical representation of supersecondary structures using a graph-theoretical approach.
English
Koch, Ina [> >]
Kreuchwig, Annika [> >]
May, Patrick mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
2013
Methods in Molecular Biology (Clifton, N.J.)
932
7-33
Yes (verified by ORBilu)
International
1064-3745
United States
[en] Amino Acid Motifs ; Computer Graphics ; Models, Molecular ; Models, Theoretical ; Protein Interaction Domains and Motifs ; Proteins/chemistry
[en] The unique representation of proteins becomes more and more important with the growing number of known protein structure data. Graph-theory provides many methods not only for the description but also for comparison and classification of protein structures. Here, we describe a graph-theoretical modeling approach of the protein supersecondary structure. The resulting linear notations are intuitive and can be used to find common substructures very fast and easily. We illustrate the necessary definitions by biological examples and discuss the representation of various supersecondary structure motifs.
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group)
http://hdl.handle.net/10993/549
10.1007/978-1-62703-065-6_2
http://link.springer.com/protocol/10.1007%2F978-1-62703-065-6_2

File(s) associated to this reference

Fulltext file(s):

FileCommentaryVersionSizeAccess
Limited access
212332_1_En_2_Koch_Kreuchwig_May.pdfAuthor preprint1.1 MBRequest a copy

Bookmark and Share SFX Query

All documents in ORBilu are protected by a user license.