Reference : PTGL--a web-based database application for protein topologies.
Scientific journals : Article
Life sciences : Biochemistry, biophysics & molecular biology
http://hdl.handle.net/10993/466
PTGL--a web-based database application for protein topologies.
English
May, Patrick mailto [Zuse Institute Berlin - ZIB > Computer Science Research]
Barthel, Stefan [> >]
Koch, Ina [> >]
2004
Bioinformatics (Oxford, England)
20
17
3277-9
Yes (verified by ORBilu)
International
1367-4803
England
[en] Computer Graphics ; Database Management Systems ; Databases, Protein ; Information Storage and Retrieval/methods ; Internet ; Models, Molecular ; Natural Language Processing ; Protein Conformation ; Proteins/analysis/chemistry ; Sequence Alignment/methods ; Sequence Analysis, Protein/methods ; Software ; User-Computer Interface
[en] Protein Topology Graph Library (PTGL) is a database application for the representation and retrieval of protein topologies. Protein topologies are based on a graph-theoretical protein model at secondary structure level. Different views on protein topology are given by four linear notations for their characterization. Protein topologies can be derived at different description levels considering alpha- and beta-structures. The on-line search tool is based on an object-relational database and provides a query browser for data interrogation by string patterns, keyword queries and sequence similarity. Protein topologies are represented both as schematic diagrams and as three-dimensional images.
http://hdl.handle.net/10993/466
10.1093/bioinformatics/bth367
http://bioinformatics.oxfordjournals.org/content/20/17/3277.html

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