Reference : PDBe-KB: a community-driven resource for structural and functional annotations
Scientific journals : Article
Engineering, computing & technology : Computer science
http://hdl.handle.net/10993/40652
PDBe-KB: a community-driven resource for structural and functional annotations
English
Varadi, M. [> >]
Berrisford, J. [> >]
Deshpande, M. [> >]
Nair, S. S. [> >]
Gutmanas, A. [> >]
Armstrong, D. [> >]
Pravda, L. [> >]
Al-Lazikani, B. [> >]
Anyango, S. [> >]
Barton, G. J. [> >]
Berka, K. [> >]
Blundell, T. [> >]
Borkakoti, N. [> >]
Dana, J. [> >]
Das, S. [> >]
Dey, S. [> >]
Micco, P. D. [> >]
Fraternali, F. [> >]
Gibson, T. [> >]
Helmer-Citterich, M. [> >]
Hoksza, David mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > > ; Charles University > Department of Software Engineering]
Huang, L. C. [> >]
Jain, R. [> >]
Jubb, H. [> >]
Kannas, C. [> >]
Kannan, N. [> >]
Koca, J. [> >]
Krivak, R. [> >]
Kumar, M. [> >]
Levy, E. D. [> >]
Madeira, F. [> >]
Madhusudhan, M. S. [> >]
Martell, H. J. [> >]
MacGowan, S. [> >]
McGreig, J. E. [> >]
Mir, S. [> >]
Mukhopadhyay, A. [> >]
Parca, L. [> >]
Paysan-Lafosse, T. [> >]
Radusky, L. [> >]
Ribeiro, A. [> >]
Serrano, L. [> >]
Sillitoe, I. [> >]
Singh, G. [> >]
Skoda, P. [> >]
Svobodova, R. [> >]
Tyzack, J. [> >]
Valencia, A. [> >]
Fernandez, E. V. [> >]
Vranken, W. [> >]
Wass, M. [> >]
Thornton, J. [> >]
Sternberg, M. [> >]
Orengo, C. [> >]
Velankar, S. [> >]
2019
Nucleic Acids Res.
Oxford University Press
Yes
International
0305-1048
1362-4962
[en] The Protein Data Bank in Europe-Knowledge Base (PDBe-KB, https://pdbe-kb.org) is a community-driven, collaborative resource for literature-derived, manually curated and computationally predicted structural and functional annotations of macromolecular structure data, contained in the Protein Data Bank (PDB). The goal of PDBe-KB is two-fold: (i) to increase the visibility and reduce the fragmentation of annotations contributed by specialist data resources, and to make these data more findable, accessible, interoperable and reusable (FAIR) and (ii) to place macromolecular structure data in their biological context, thus facilitating their use by the broader scientific community in fundamental and applied research. Here, we describe the guidelines of this collaborative effort, the current status of contributed data, and the PDBe-KB infrastructure, which includes the data exchange format, the deposition system for added value annotations, the distributable database containing the assembled data, and programmatic access endpoints. We also describe a series of novel web-pages—the PDBe-KB aggregated views of structure data—which combine information on macromolecular structures from many PDB entries. We have recently released the first set of pages in this series, which provide an overview of available structural and functional information for a protein of interest, referenced by a UniProtKB accession.
Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group)
http://hdl.handle.net/10993/40652
10.1093/nar/gkz853
https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkz853/5580911

File(s) associated to this reference

Fulltext file(s):

FileCommentaryVersionSizeAccess
Limited access
gkz853.pdfPublisher postprint2.93 MBRequest a copy

Bookmark and Share SFX Query

All documents in ORBilu are protected by a user license.