Reference : The Microbiome Modeling Toolbox: from microbial interactions to personalized microbia...
Scientific journals : Article
Life sciences : Microbiology
Life sciences : Multidisciplinary, general & others
Computational Sciences; Systems Biomedicine
http://hdl.handle.net/10993/37866
The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities
English
Baldini, Federico mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
Heinken, Almut Katrin mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
Heirendt, Laurent mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
Magnusdottir, Stefania []
Fleming, Ronan mailto [Leiden Academic Centre for Drug Research > LACDR/Analytical Biosciences]
Thiele, Ines mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
21-Nov-2018
Bioinformatics
Oxford University Press
The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities
Yes (verified by ORBilu)
International
1367-4803
1367-4811
Oxford
United Kingdom
[en] The application of constraint-based modeling to functionally analyze metagenomic data has been limited so far, partially due to the absence of suitable toolboxes.
To address this gap, we created a comprehensive toolbox to model i) microbe-microbe and host-microbe metabolic interactions, and ii) microbial communities using microbial genome-scale metabolic reconstructions and metagenomic data. The Microbiome Modeling Toolbox extends the functionality of the COBRA Toolbox.
The Microbiome Modeling Toolbox and the tutorials at https://git.io/microbiomeModelingToolbox.
http://hdl.handle.net/10993/37866
10.1093/bioinformatics/bty941

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