Reference : ReconMap: An interactive visualisation of human metabolism
Scientific journals : Article
Life sciences : Biochemistry, biophysics & molecular biology
Systems Biomedicine
http://hdl.handle.net/10993/28047
ReconMap: An interactive visualisation of human metabolism
English
Noronha, Alberto mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
Danielsdóttir, Anna Dröfn [University of Iceland > Center for Systems Biology]
Jóhannsson, Freyr [Universuty of Iceland > Center for Systems Biology]
Jónsdóttir, Soffia [University of Iceland > Center for Systems Biology]
Jarlsson, Sindri [University of Iceland > Center for Systems Biology]
Gunnarsson, Jón Pétur [University of Iceland > Center for Systems Biology]
Brynjólfsson, Sigurður [University of Iceland > Center for Systems Biology]
Gawron, Piotr mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
Schneider, Reinhard mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
Thiele, Ines mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
Fleming, Ronan MT mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
2016
Bioinformatics
Oxford University Press - Journals Department
Yes (verified by ORBilu)
International
1367-4803
1460-2059
Oxford
United Kingdom
[en] A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualise its content integrated with omics data and simulation results. We manually drew a comprehensive map, ReconMap 2.0, that is consistent with the content of Recon 2. We present it within a web interface that allows content query, visualization of custom datasets and submission of feedback to manual curators. ReconMap can be accessed via http://vmh.uni.lu, with network export in a Systems Biology Graphical Notation compliant format. A Constraint-Based Reconstruction and Analysis (COBRA) Toolbox extension to interact with ReconMap is available via https://github.com/opencobra/cobratoolbox.
http://hdl.handle.net/10993/28047

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