Reference : TreeDet: a web server to explore sequence space.
Scientific journals : Article
Life sciences : Multidisciplinary, general & others
http://hdl.handle.net/10993/17846
TreeDet: a web server to explore sequence space.
English
Carro, Angel [> >]
Tress, Michael [> >]
de Juan, David [> >]
Pazos, Florencio [> >]
Lopez-Romero, Pedro [> >]
del Sol Mesa, Antonio mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) >]
Valencia, Alfonso [> >]
Rojas, Ana M. [> >]
13-Mar-2006
Nucleic acids research
34
Web Server issue
W110-5
Yes (verified by ORBilu)
0305-1048
1362-4962
England
[en] Amino Acid Sequence ; Conserved Sequence ; Internet ; Proteins/classification ; Sequence Alignment/methods ; Sequence Analysis, Protein ; Software ; User-Computer Interface
[en] The TreeDet (Tree Determinant) Server is the first release of a system designed to integrate results from methods that predict functional sites in protein families. These methods take into account the relation between sequence conservation and evolutionary importance. TreeDet fully analyses the space of protein sequences in either user-uploaded or automatically generated multiple sequence alignments. The methods implemented in the server represent three main classes of methods for the detection of family-dependent conserved positions, a tree-based method, a correlation based method and a method that employs a principal component analyses coupled to a cluster algorithm. An additional method is provided to highlight the reliability of the position in the alignments. The server is available at http://www.pdg.cnb.uam.es/servers/treedet.
http://hdl.handle.net/10993/17846

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