Reference : Network Visualization Tools to Enhance Metabolic Engineering Platforms
Scientific congresses, symposiums and conference proceedings : Paper published in a book
Engineering, computing & technology : Computer science
http://hdl.handle.net/10993/17335
Network Visualization Tools to Enhance Metabolic Engineering Platforms
English
Noronha, Alberto mailto [University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB) > >]
Vilaça, Paulo mailto [Silico Life]
Rocha, Miguel mailto [University of Minho > CCTC, School of Engineering]
2013
7th International Conference on Practical Applications of Computational Biology & Bioinformatics
Springer International Publishing
Advances in Intelligent Systems and Computing; 222
137-144
Yes
978-3-319-00577-5
7th International Conference on Practical Applications of Computational Biology & Bioinformatics
from 22-05-2013 to 25-05-2013
Salamanca
Spain
[en] Metabolic models ; biological network visualization ; metabolic engineering ; open-source software
[en] In this work, we present a software platform for the visualization of metabolic models, which is implemented as a plug-in for the open-source metabolic engineering (ME) platform OptFlux. The tools provided by this plug-in allow the visualization of the models (or parts of the models) combined with the results from operations applied over these models, mainly regarding phenotype simulation, strain optimization and pathway analysis. The tool provides a generic input/ output framework that can import/ export layouts from different formats used by other tools, namely XGMML and SBML. Thus, this work provides a bridge between network visualization and ME.
http://hdl.handle.net/10993/17335

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