Reference : Identification of potential pathway mediation targets in Toll-like receptor signaling.
Scientific journals : Article
Life sciences : Multidisciplinary, general & others
http://hdl.handle.net/10993/13047
Identification of potential pathway mediation targets in Toll-like receptor signaling.
English
Li, Fan [> >]
Thiele, Ines mailto []
Jamshidi, Neema [> >]
Palsson, Bernhard O. [> >]
2009
PLoS Computational Biology
5
2
e1000292
Yes (verified by ORBilu)
1553-734X
1553-7358
United States
[en] Cell Compartmentation/physiology ; Feedback, Physiological ; Humans ; Models, Biological ; Phosphorylation ; Proteome/chemistry/metabolism ; Signal Transduction/physiology ; Toll-Like Receptors/agonists/antagonists & inhibitors/physiology
[en] Recent advances in reconstruction and analytical methods for signaling networks have spurred the development of large-scale models that incorporate fully functional and biologically relevant features. An extended reconstruction of the human Toll-like receptor signaling network is presented herein. This reconstruction contains an extensive complement of kinases, phosphatases, and other associated proteins that mediate the signaling cascade along with a delineation of their associated chemical reactions. A computational framework based on the methods of large-scale convex analysis was developed and applied to this network to characterize input-output relationships. The input-output relationships enabled significant modularization of the network into ten pathways. The analysis identified potential candidates for inhibitory mediation of TLR signaling with respect to their specificity and potency. Subsequently, we were able to identify eight novel inhibition targets through constraint-based modeling methods. The results of this study are expected to yield meaningful avenues for further research in the task of mediating the Toll-like receptor signaling network and its effects.
http://hdl.handle.net/10993/13047
10.1371/journal.pcbi.1000292

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