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See detailrBioNet: A COBRA toolbox extension for reconstructing high-quality biochemical networks.
Thorleifsson, Stefan Gretar; Thiele, Ines UL

in Bioinformatics (Oxford, England) (2011), 27(14), 2009-10

MOTIVATION: Genome-scale metabolic networks are widely used in systems biology. However, to date no freely available tool exists that ensures quality control during the reconstruction process. RESULTS ... [more ▼]

MOTIVATION: Genome-scale metabolic networks are widely used in systems biology. However, to date no freely available tool exists that ensures quality control during the reconstruction process. RESULTS: Here, we present a COBRA toolbox extension, rBioNet, enabling the construction of publication-level biochemical networks while enforcing necessary quality control measures. rBioNet has an intuitive user interface facilitating the reconstruction process for novices and experts. AVAILABILITY: The rBioNet is freely available from http://opencobra.sourceforge.net. [less ▲]

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